RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 MED14O60244 1454 aa13.61□□□□□ -0.23
HDAC9-210ENST00000428307 ARHGAP23Q9P227 1491 aa13.61□□□□□ -0.23
HDAC9-210ENST00000428307 SLIT1O75093 1534 aa13.6□□□□□ -0.23
HDAC9-210ENST00000428307 CPS1P31327 1500 aa13.6□□□□□ -0.23
HDAC9-210ENST00000428307 EDC4Q6P2E9 1401 aaKnown RBP13.6□□□□□ -0.23
HDAC9-210ENST00000428307 CRBNQ96SW2 442 aa13.6□□□□□ -0.23
HDAC9-210ENST00000428307 ZNF692Q9BU19 519 aaPredicted RBP13.6□□□□□ -0.23
HDAC9-210ENST00000428307 DNAJC5Q9H3Z4 198 aa13.6□□□□□ -0.23
HDAC9-210ENST00000428307 EMILIN1Q9Y6C2 1016 aa13.6□□□□□ -0.23
HDAC9-210ENST00000428307 BCAR3O75815 825 aa13.59□□□□□ -0.23
HDAC9-210ENST00000428307 COG3Q96JB2 828 aa13.59□□□□□ -0.23
HDAC9-210ENST00000428307 RBM19Q9Y4C8 960 aaKnown RBP13.59□□□□□ -0.23
HDAC9-210ENST00000428307 ACEP12821 1306 aa13.59□□□□□ -0.23
HDAC9-210ENST00000428307 RRS1Q15050 365 aaKnown RBP13.58□□□□□ -0.24
HDAC9-210ENST00000428307 PMFBP1Q8TBY8 1022 aa13.58□□□□□ -0.24
HDAC9-210ENST00000428307 PLEKHF1Q96S99 279 aa13.58□□□□□ -0.24
HDAC9-210ENST00000428307 PHF23Q9BUL5 403 aaPredicted RBP13.58□□□□□ -0.24
HDAC9-210ENST00000428307 NKTRP30414 1462 aaKnown RBP13.58□□□□□ -0.24
HDAC9-210ENST00000428307 KCNA6P17658 529 aa13.58□□□□□ -0.24
HDAC9-210ENST00000428307 PNPLA6Q8IY17 1366 aa13.58□□□□□ -0.24
HDAC9-210ENST00000428307 MAPK8IP3Q9UPT6 1336 aa13.57□□□□□ -0.24
HDAC9-210ENST00000428307 WDR63Q8IWG1 891 aa13.57□□□□□ -0.24
HDAC9-210ENST00000428307 TMPOP42166 694 aaKnown RBP13.56□□□□□ -0.24
HDAC9-210ENST00000428307 CCDC27Q2M243 656 aa13.56□□□□□ -0.24
HDAC9-210ENST00000428307 ANKLE2Q86XL3 938 aa13.56□□□□□ -0.24
HDAC9-210ENST00000428307 COL3A1P02461 1466 aaPredicted RBP13.56□□□□□ -0.24
HDAC9-210ENST00000428307 KNDC1Q76NI1 1749 aa13.56□□□□□ -0.24
HDAC9-210ENST00000428307 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.56□□□□□ -0.24
HDAC9-210ENST00000428307 IQSEC2Q5JU85 1478 aa13.55□□□□□ -0.24
HDAC9-210ENST00000428307 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.55□□□□□ -0.24
HDAC9-210ENST00000428307 PLEKHG3A1L390 1219 aa13.55□□□□□ -0.24
HDAC9-210ENST00000428307 HMOX1P09601 288 aa13.55□□□□□ -0.24
HDAC9-210ENST00000428307 RBM33Q96EV2 1170 aaKnown RBP13.55□□□□□ -0.24
HDAC9-210ENST00000428307 TTC21BQ7Z4L5 1316 aa13.54□□□□□ -0.24
HDAC9-210ENST00000428307 SOX12O15370 315 aa13.54□□□□□ -0.24
HDAC9-210ENST00000428307 RIPK4P57078 832 aa13.54□□□□□ -0.24
HDAC9-210ENST00000428307 CDC42BPGQ6DT37 1551 aa13.54□□□□□ -0.24
HDAC9-210ENST00000428307 FCHSD2O94868 740 aa13.53□□□□□ -0.24
HDAC9-210ENST00000428307 PRKAR2BP31323 418 aa13.53□□□□□ -0.24
HDAC9-210ENST00000428307 TRIM35Q9UPQ4 493 aa13.53□□□□□ -0.24
HDAC9-210ENST00000428307 NGDNQ8NEJ9 315 aaKnown RBP13.53□□□□□ -0.24
HDAC9-210ENST00000428307 CEP170BQ9Y4F5 1589 aaPredicted RBP13.52□□□□□ -0.25
HDAC9-210ENST00000428307 RIMS1Q86UR5 1692 aaKnown RBP13.52□□□□□ -0.25
HDAC9-210ENST00000428307 TSR2Q969E8 191 aaKnown RBP13.52□□□□□ -0.25
HDAC9-210ENST00000428307 PNNQ9H307 717 aaKnown RBP13.52□□□□□ -0.25
HDAC9-210ENST00000428307 MYH16Q9H6N6 1097 aa13.52□□□□□ -0.25
HDAC9-210ENST00000428307 IL13P35225 146 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 FRAT1Q92837 279 aaPredicted RBP13.51□□□□□ -0.25
HDAC9-210ENST00000428307 PHACTR3Q96KR7 559 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 BCL2L13Q9BXK5 485 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 RSPH6AQ9H0K4 717 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 PTCH1Q13635 1447 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 ANKRD26Q9UPS8 1709 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 KIF20BQ96Q89 1820 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 NEFMP07197 916 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 AATKQ6ZMQ8 1374 aa13.51□□□□□ -0.25
HDAC9-210ENST00000428307 CANXP27824 592 aaKnown RBP13.5□□□□□ -0.25
HDAC9-210ENST00000428307 NCBP3Q53F19 620 aaKnown RBP13.5□□□□□ -0.25
HDAC9-210ENST00000428307 USP6P35125 1406 aa13.5□□□□□ -0.25
HDAC9-210ENST00000428307 RARSP54136 660 aaKnown RBP13.5□□□□□ -0.25
HDAC9-210ENST00000428307 ADGRB2O60241 1585 aa13.49□□□□□ -0.25
HDAC9-210ENST00000428307 FANCIQ9NVI1 1328 aa13.47□□□□□ -0.25
HDAC9-210ENST00000428307 PANK1Q8TE04 598 aa13.47□□□□□ -0.25
HDAC9-210ENST00000428307 PIK3R4Q99570 1358 aa13.47□□□□□ -0.25
HDAC9-210ENST00000428307 EXOSC9Q06265 439 aaKnown RBP13.46□□□□□ -0.25
HDAC9-210ENST00000428307 HSP90AB2PQ58FF8 381 aa13.46□□□□□ -0.25
HDAC9-210ENST00000428307 NUTM2GQ5VZR2 741 aa13.46□□□□□ -0.25
HDAC9-210ENST00000428307 MAP2P11137 1827 aaKnown RBP13.46□□□□□ -0.25
HDAC9-210ENST00000428307 SKAP1Q86WV1 359 aa13.46□□□□□ -0.25
HDAC9-210ENST00000428307 THUMPD2Q9BTF0 503 aaKnown RBP13.46□□□□□ -0.25
HDAC9-210ENST00000428307 LAS1LQ9Y4W2 734 aaKnown RBP13.46□□□□□ -0.25
HDAC9-210ENST00000428307 MON2Q7Z3U7 1717 aa13.46□□□□□ -0.26
HDAC9-210ENST00000428307 DIP2AQ14689 1571 aa13.45□□□□□ -0.26
HDAC9-210ENST00000428307 COG6Q9Y2V7 657 aa13.45□□□□□ -0.26
HDAC9-210ENST00000428307 CDK12Q9NYV4 1490 aaPredicted RBP13.45□□□□□ -0.26
HDAC9-210ENST00000428307 PAK3O75914 559 aaPredicted RBP13.45□□□□□ -0.26
HDAC9-210ENST00000428307 EIF4A2Q14240 407 aaKnown RBP13.45□□□□□ -0.26
HDAC9-210ENST00000428307 NFE2L2Q16236 605 aa13.45□□□□□ -0.26
HDAC9-210ENST00000428307 NLRP6P59044 892 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 PDE3AQ14432 1141 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 AEBP1Q8IUX7 1158 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 CLUAP1Q96AJ1 413 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 TNNQ9UQP3 1299 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 SSH2Q76I76 1423 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 LRRC7Q96NW7 1537 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 SULT6B1Q6IMI4 303 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 C14orf37Q86TY3 774 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 TTC21AQ8NDW8 1320 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 ITSN1Q15811 1721 aa13.44□□□□□ -0.26
HDAC9-210ENST00000428307 OVOS2A0A0J9YW53 1432 aa13.43□□□□□ -0.26
HDAC9-210ENST00000428307 OVOS2Q6IE36 1432 aa13.43□□□□□ -0.26
HDAC9-210ENST00000428307 ADAMTSL3P82987 1691 aa13.43□□□□□ -0.26
HDAC9-210ENST00000428307 AKAP12Q02952 1782 aa13.43□□□□□ -0.26
HDAC9-210ENST00000428307 IL16Q14005 1332 aa13.43□□□□□ -0.26
HDAC9-210ENST00000428307 MAP3K19Q56UN5 1328 aa13.42□□□□□ -0.26
HDAC9-210ENST00000428307 RLBP1P12271 317 aa13.42□□□□□ -0.26
HDAC9-210ENST00000428307 XRN1Q8IZH2 1706 aaKnown RBP13.42□□□□□ -0.26
HDAC9-210ENST00000428307 ABTB2Q8N961 1025 aa13.42□□□□□ -0.26
HDAC9-210ENST00000428307 TOPAZ1Q8N9V7 1692 aa13.41□□□□□ -0.26
HDAC9-210ENST00000428307 SMC4Q9NTJ3 1288 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms