RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 ATOH1Q92858 354 aaPredicted RBP3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 ACSBG1Q96GR2 724 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 PIM2Q9P1W9 311 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 CIZ1Q9ULV3 898 aaPredicted RBP3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 ASXL3Q9C0F0 2248 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 RBM46Q8TBY0 533 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 BTG4Q9NY30 223 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 CUL9Q8IWT3 2517 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 PHLDB1Q86UU1 1377 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 NOGQ13253 232 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 INTS3Q68E01 1043 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 PAXBP1Q9Y5B6 917 aa3.66□□□□□ -1.82
CCDC88A-205ENST00000426576 CNGA1P29973 690 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 CTU1Q7Z7A3 348 aaKnown RBP3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 DEFB123Q8N688 67 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 EFCC1Q9HA90 598 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 FAM177BA6PVY3 158 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 SLC34A2O95436 690 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 LARGE2Q8N3Y3 721 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 MSRAQ9UJ68 235 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 CCNL1Q9UK58 526 aaPredicted RBP3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 KCNH4Q9UQ05 1017 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 FAM135AQ9P2D6 1515 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 PLB1Q6P1J6 1458 aa3.65□□□□□ -1.82
CCDC88A-205ENST00000426576 PDE6BP35913 854 aa3.65□□□□□ -1.83
CCDC88A-205ENST00000426576 ALYREFQ86V81 257 aaKnown RBP3.65□□□□□ -1.83
CCDC88A-205ENST00000426576 SKAP1Q86WV1 359 aa3.65□□□□□ -1.83
CCDC88A-205ENST00000426576 RUBCNLQ9H714 662 aa3.65□□□□□ -1.83
CCDC88A-205ENST00000426576 PKN2Q16513 984 aaKnown RBP3.65□□□□□ -1.83
CCDC88A-205ENST00000426576 CACNA1EQ15878 2313 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 DCDC2CA8MYV0 355 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 ATXN3P54252 364 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 NOM1Q5C9Z4 860 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 TTC5Q8N0Z6 440 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 PRIMPOLQ96LW4 560 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 SPC25Q9HBM1 224 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 SEPT3Q9UH03 358 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 PDE4AP27815 886 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 ST5P78524 1137 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 SREBF2Q12772 1141 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 SMCR8Q8TEV9 937 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 NIM1KQ8IY84 436 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 NOL10Q9BSC4 688 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 PPP4R2Q9NY27 417 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 USP18Q9UMW8 372 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 MYO9BQ13459 2157 aa3.64□□□□□ -1.83
CCDC88A-205ENST00000426576 CDCA8Q53HL2 280 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 ARMC9Q7Z3E5 817 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 RPGRQ92834 1020 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 SMARCC1Q92922 1105 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 PRM3Q9NNZ6 103 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 SALL3Q9BXA9 1300 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 RGL2O15211 777 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 TAF1BQ53T94 588 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 TAF7LQ5H9L4 462 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 NUTM2GQ5VZR2 741 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 MOCOSQ96EN8 888 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 ERO1AQ96HE7 468 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 HACL1Q9UJ83 578 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 RTCBQ9Y3I0 505 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 IVNS1ABPQ9Y6Y0 642 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 UQCRHP07919 91 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 SLC4A3P48751 1232 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 EVX2Q03828 476 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 SPATA18Q8TC71 538 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 CAPNS2Q96L46 248 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 MAP10Q9P2G4 905 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 PPP1R12BO60237 982 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 CELF2O95319 508 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 PDE3AQ14432 1141 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 SART3Q15020 963 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 NLRP13Q86W25 1043 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 LRRN4CLQ8ND94 238 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 MYD88Q99836 296 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 SSUH2Q9Y2M2 353 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 PIEZO1Q92508 2521 aa3.63□□□□□ -1.83
CCDC88A-205ENST00000426576 SDHBP21912 280 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 NBPF10Q6P3W6 841 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 RUFY4Q6ZNE9 571 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 NUDT16Q96DE0 195 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 ANKFY1Q9P2R3 1169 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 AQRO60306 1485 aaKnown RBP eCLIP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 WDR62O43379 1518 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 HTRA3P83110 453 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 MKRN3Q13064 507 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 CMTR1Q8N1G2 835 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 FBXL21Q9UKT6 434 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 EP300Q09472 2414 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 CLIP1P30622 1438 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 ALDH1A1P00352 501 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 HABP4Q5JVS0 413 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 SAMD7Q7Z3H4 446 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 ABTB2Q8N961 1025 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 SH2B1Q9NRF2 756 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 BLMP54132 1417 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 BAZ1AQ9NRL2 1556 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 CCDC18Q5T9S5 1454 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 IFT140Q96RY7 1462 aa3.62□□□□□ -1.83
CCDC88A-205ENST00000426576 MDM2Q00987 491 aaPredicted RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms