RNA–Protein interactions for RNA: ENST00000425660.5

ACTB-204, Transcript of actin beta, humanhuman

TSL 1 (best)

Gene ACTB, Length 1,845 nt, Biotype nonsense mediated decay, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-204ENST00000425660 COL3A1P02461 1466 aaPredicted RBP20.22■□□□□ 0.83
ACTB-204ENST00000425660 AATKQ6ZMQ8 1374 aa20.22■□□□□ 0.83
ACTB-204ENST00000425660 NME9Q86XW9 330 aa20.22■□□□□ 0.83
ACTB-204ENST00000425660 TTC21BQ7Z4L5 1316 aa20.22■□□□□ 0.83
ACTB-204ENST00000425660 NUDCQ9Y266 331 aa20.21■□□□□ 0.83
ACTB-204ENST00000425660 RGPD8O14715 1765 aaPredicted RBP20.18■□□□□ 0.82
ACTB-204ENST00000425660 SENP3-EIF4A1A0A087X0R7 540 aa20.18■□□□□ 0.82
ACTB-204ENST00000425660 COG3Q96JB2 828 aa20.18■□□□□ 0.82
ACTB-204ENST00000425660 OVOS2A0A0J9YW53 1432 aa20.18■□□□□ 0.82
ACTB-204ENST00000425660 OVOS2Q6IE36 1432 aa20.18■□□□□ 0.82
ACTB-204ENST00000425660 NGEFQ8N5V2 710 aa20.18■□□□□ 0.82
ACTB-204ENST00000425660 TTC21AQ8NDW8 1320 aa20.17■□□□□ 0.82
ACTB-204ENST00000425660 POLKQ9UBT6 870 aa20.17■□□□□ 0.82
ACTB-204ENST00000425660 ZNF521Q96K83 1311 aa20.17■□□□□ 0.82
ACTB-204ENST00000425660 PMFBP1Q8TBY8 1022 aa20.16■□□□□ 0.82
ACTB-204ENST00000425660 ZRANB1Q9UGI0 708 aa20.16■□□□□ 0.82
ACTB-204ENST00000425660 NGDNQ8NEJ9 315 aaKnown RBP20.15■□□□□ 0.82
ACTB-204ENST00000425660 STRCQ7RTU9 1775 aa20.14■□□□□ 0.82
ACTB-204ENST00000425660 RBM33Q96EV2 1170 aaKnown RBP20.14■□□□□ 0.81
ACTB-204ENST00000425660 SALL2Q9Y467 1007 aaPredicted RBP20.14■□□□□ 0.81
ACTB-204ENST00000425660 SUPT16HQ9Y5B9 1047 aaKnown RBP20.14■□□□□ 0.81
ACTB-204ENST00000425660 CCDC146Q8IYE0 955 aa20.13■□□□□ 0.81
ACTB-204ENST00000425660 USP31Q70CQ4 1352 aa20.13■□□□□ 0.81
ACTB-204ENST00000425660 NCOA3Q9Y6Q9 1424 aa20.13■□□□□ 0.81
ACTB-204ENST00000425660 CDK12Q9NYV4 1490 aaPredicted RBP20.13■□□□□ 0.81
ACTB-204ENST00000425660 IQSEC2Q5JU85 1478 aa20.12■□□□□ 0.81
ACTB-204ENST00000425660 APAF1O14727 1248 aa20.12■□□□□ 0.81
ACTB-204ENST00000425660 PROSER2Q86WR7 435 aaPredicted RBP20.11■□□□□ 0.81
ACTB-204ENST00000425660 RUNDC1Q96C34 613 aa20.11■□□□□ 0.81
ACTB-204ENST00000425660 DIAPH1O60610 1272 aaKnown RBP20.11■□□□□ 0.81
ACTB-204ENST00000425660 NCBP3Q53F19 620 aaKnown RBP20.11■□□□□ 0.81
ACTB-204ENST00000425660 NEFLP07196 543 aa20.1■□□□□ 0.81
ACTB-204ENST00000425660 PHF8Q9UPP1 1060 aa20.1■□□□□ 0.81
ACTB-204ENST00000425660 MAP2P11137 1827 aaKnown RBP20.1■□□□□ 0.81
ACTB-204ENST00000425660 U2AF1L5P0DN76 240 aaPredicted RBP20.09■□□□□ 0.81
ACTB-204ENST00000425660 FBLN1P23142 703 aa20.09■□□□□ 0.81
ACTB-204ENST00000425660 U2AF1Q01081 240 aaKnown RBP eCLIP20.09■□□□□ 0.813e-42■□□□□ 8.5
ACTB-204ENST00000425660 C19orf44Q9H6X5 657 aa20.09■□□□□ 0.81
ACTB-204ENST00000425660 EMILIN1Q9Y6C2 1016 aa20.09■□□□□ 0.81
ACTB-204ENST00000425660 STRCP1A6NGW2 1772 aa20.08■□□□□ 0.81
ACTB-204ENST00000425660 PIK3C2AO00443 1686 aa20.08■□□□□ 0.81
ACTB-204ENST00000425660 C14orf37Q86TY3 774 aa20.08■□□□□ 0.8
ACTB-204ENST00000425660 CDCA7LQ96GN5 454 aa20.08■□□□□ 0.8
ACTB-204ENST00000425660 DCCP43146 1447 aa20.08■□□□□ 0.8
ACTB-204ENST00000425660 LRRC7Q96NW7 1537 aa20.08■□□□□ 0.8
ACTB-204ENST00000425660 USP54Q70EL1 1684 aa20.08■□□□□ 0.8
ACTB-204ENST00000425660 RNF123Q5XPI4 1314 aa20.07■□□□□ 0.8
ACTB-204ENST00000425660 FKBP8Q14318 412 aa20.07■□□□□ 0.8
ACTB-204ENST00000425660 PHF23Q9BUL5 403 aaPredicted RBP20.06■□□□□ 0.8
ACTB-204ENST00000425660 PLEKHF1Q96S99 279 aa20.06■□□□□ 0.8
ACTB-204ENST00000425660 TMEM94Q12767 1356 aa20.06■□□□□ 0.8
ACTB-204ENST00000425660 GOLGA2Q08379 1002 aa20.05■□□□□ 0.8
ACTB-204ENST00000425660 RRS1Q15050 365 aaKnown RBP20.04■□□□□ 0.8
ACTB-204ENST00000425660 TCP11L2Q8N4U5 519 aa20.04■□□□□ 0.8
ACTB-204ENST00000425660 U2SURPO15042 1029 aaKnown RBP20.04■□□□□ 0.8
ACTB-204ENST00000425660 PPM1GO15355 546 aaPredicted RBP20.04■□□□□ 0.8
ACTB-204ENST00000425660 IL13P35225 146 aa20.04■□□□□ 0.8
ACTB-204ENST00000425660 CCDC27Q2M243 656 aa20.04■□□□□ 0.8
ACTB-204ENST00000425660 ESCO1Q5FWF5 840 aa20.04■□□□□ 0.8
ACTB-204ENST00000425660 C1orf167Q5SNV9 1468 aa20.03■□□□□ 0.8
ACTB-204ENST00000425660 FCHSD2O94868 740 aa20.02■□□□□ 0.8
ACTB-204ENST00000425660 TRMT2AQ8IZ69 625 aaKnown RBP20.02■□□□□ 0.8
ACTB-204ENST00000425660 DUSP27Q5VZP5 1158 aa20.02■□□□□ 0.79
ACTB-204ENST00000425660 WWC1Q8IX03 1113 aa20.02■□□□□ 0.79
ACTB-204ENST00000425660 PNNQ9H307 717 aaKnown RBP20.02■□□□□ 0.79
ACTB-204ENST00000425660 SLFN5Q08AF3 891 aa20.01■□□□□ 0.79
ACTB-204ENST00000425660 MARF1Q9Y4F3 1742 aaKnown RBP20■□□□□ 0.79
ACTB-204ENST00000425660 ERICH6BQ5W0A0 696 aa20■□□□□ 0.79
ACTB-204ENST00000425660 ZNF335Q9H4Z2 1342 aaPredicted RBP20■□□□□ 0.79
ACTB-204ENST00000425660 MST1RQ04912 1400 aa20■□□□□ 0.79
ACTB-204ENST00000425660 ORAI2Q96SN7 254 aa19.99■□□□□ 0.79
ACTB-204ENST00000425660 KIF1AQ12756 1690 aa19.99■□□□□ 0.79
ACTB-204ENST00000425660 NLRP6P59044 892 aa19.99■□□□□ 0.79
ACTB-204ENST00000425660 E9PSI1 815 aa19.98■□□□□ 0.79
ACTB-204ENST00000425660 ABTB2Q8N961 1025 aa19.98■□□□□ 0.79
ACTB-204ENST00000425660 RSPH6AQ9H0K4 717 aa19.98■□□□□ 0.79
ACTB-204ENST00000425660 RCAN3Q9UKA8 241 aa19.98■□□□□ 0.79
ACTB-204ENST00000425660 KIF24Q5T7B8 1368 aa19.98■□□□□ 0.79
ACTB-204ENST00000425660 PEAK1Q9H792 1746 aa19.98■□□□□ 0.79
ACTB-204ENST00000425660 ATF3P18847 181 aa19.97■□□□□ 0.79
ACTB-204ENST00000425660 PSME1Q06323 249 aa19.97■□□□□ 0.79
ACTB-204ENST00000425660 MAP3K19Q56UN5 1328 aa19.97■□□□□ 0.79
ACTB-204ENST00000425660 SBNO1A3KN83 1393 aa19.97■□□□□ 0.79
ACTB-204ENST00000425660 CADPS2Q86UW7 1296 aa19.96■□□□□ 0.79
ACTB-204ENST00000425660 WDR63Q8IWG1 891 aa19.96■□□□□ 0.79
ACTB-204ENST00000425660 FLT4P35916 1363 aa19.95■□□□□ 0.78
ACTB-204ENST00000425660 SPINK5Q9NQ38 1064 aaPredicted RBP19.95■□□□□ 0.78
ACTB-204ENST00000425660 MAPK8IP3Q9UPT6 1336 aa19.95■□□□□ 0.78
ACTB-204ENST00000425660 DMRT2Q9Y5R5 561 aa19.95■□□□□ 0.78
ACTB-204ENST00000425660 PAK3O75914 559 aaPredicted RBP19.95■□□□□ 0.78
ACTB-204ENST00000425660 TMPOP42166 694 aaKnown RBP19.95■□□□□ 0.78
ACTB-204ENST00000425660 RRP7AQ9Y3A4 280 aaKnown RBP19.95■□□□□ 0.78
ACTB-204ENST00000425660 MSH6P52701 1360 aa19.94■□□□□ 0.78
ACTB-204ENST00000425660 FOXO3O43524 673 aa19.94■□□□□ 0.78
ACTB-204ENST00000425660 EIF4A2Q14240 407 aaKnown RBP19.94■□□□□ 0.78
ACTB-204ENST00000425660 NEUROD2Q15784 382 aa19.93■□□□□ 0.78
ACTB-204ENST00000425660 PRKAR2BP31323 418 aa19.92■□□□□ 0.78
ACTB-204ENST00000425660 HSP90AB2PQ58FF8 381 aa19.92■□□□□ 0.78
ACTB-204ENST00000425660 XIRP1Q702N8 1843 aaKnown RBP19.92■□□□□ 0.78
ACTB-204ENST00000425660 TRPM3Q9HCF6 1732 aaPredicted RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms