RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ROBO1Q9Y6N7 1651 aa13.72□□□□□ -0.21
CD44-207ENST00000425428 KIF20BQ96Q89 1820 aa13.72□□□□□ -0.21
CD44-207ENST00000425428 CNGB1Q14028 1251 aaPredicted RBP13.72□□□□□ -0.21
CD44-207ENST00000425428 ABTB2Q8N961 1025 aa13.72□□□□□ -0.21
CD44-207ENST00000425428 COG3Q96JB2 828 aa13.71□□□□□ -0.21
CD44-207ENST00000425428 TTC21BQ7Z4L5 1316 aa13.71□□□□□ -0.22
CD44-207ENST00000425428 CD163L1Q9NR16 1453 aa13.7□□□□□ -0.22
CD44-207ENST00000425428 CC2D1BQ5T0F9 858 aaKnown RBP13.7□□□□□ -0.22
CD44-207ENST00000425428 MORC1Q86VD1 984 aa13.7□□□□□ -0.22
CD44-207ENST00000425428 NLRP13Q86W25 1043 aa13.7□□□□□ -0.22
CD44-207ENST00000425428 CARD14Q9BXL6 1004 aa13.7□□□□□ -0.22
CD44-207ENST00000425428 XPCQ01831 940 aaPredicted RBP13.69□□□□□ -0.22
CD44-207ENST00000425428 RALBP1Q15311 655 aa13.69□□□□□ -0.22
CD44-207ENST00000425428 LRRC59Q96AG4 307 aaKnown RBP13.69□□□□□ -0.22
CD44-207ENST00000425428 SBNO1A3KN83 1393 aa13.69□□□□□ -0.22
CD44-207ENST00000425428 ARHGEF10O15013 1369 aa13.69□□□□□ -0.22
CD44-207ENST00000425428 NPC1L1Q9UHC9 1359 aa13.69□□□□□ -0.22
CD44-207ENST00000425428 PER1O15534 1290 aaPredicted RBP13.68□□□□□ -0.22
CD44-207ENST00000425428 NLRP6P59044 892 aa13.68□□□□□ -0.22
CD44-207ENST00000425428 NHSL1Q5SYE7 1610 aa13.68□□□□□ -0.22
CD44-207ENST00000425428 PHLPP1O60346 1717 aa13.68□□□□□ -0.22
CD44-207ENST00000425428 HAP1P54257 671 aaPredicted RBP13.68□□□□□ -0.22
CD44-207ENST00000425428 GGNBP2Q9H3C7 697 aa13.66□□□□□ -0.22
CD44-207ENST00000425428 ANKRD26Q9UPS8 1709 aa13.66□□□□□ -0.22
CD44-207ENST00000425428 NRKQ7Z2Y5 1582 aa13.66□□□□□ -0.22
CD44-207ENST00000425428 SOS2Q07890 1332 aaPredicted RBP13.66□□□□□ -0.22
CD44-207ENST00000425428 AHDC1Q5TGY3 1603 aaPredicted RBP13.66□□□□□ -0.22
CD44-207ENST00000425428 FYB1O15117 783 aa13.66□□□□□ -0.22
CD44-207ENST00000425428 AMER1Q5JTC6 1135 aaPredicted RBP13.66□□□□□ -0.22
CD44-207ENST00000425428 NME9Q86XW9 330 aa13.66□□□□□ -0.22
CD44-207ENST00000425428 KCNH5Q8NCM2 988 aa13.66□□□□□ -0.22
CD44-207ENST00000425428 TNS3Q68CZ2 1445 aa13.65□□□□□ -0.22
CD44-207ENST00000425428 DDX17Q92841 729 aaKnown RBP13.65□□□□□ -0.22
CD44-207ENST00000425428 SPATA31A3Q5VYP0 1347 aa13.64□□□□□ -0.23
CD44-207ENST00000425428 PXDNQ92626 1479 aa13.64□□□□□ -0.23
CD44-207ENST00000425428 TRPM3Q9HCF6 1732 aaPredicted RBP13.63□□□□□ -0.23
CD44-207ENST00000425428 NUTM2GQ5VZR2 741 aa13.63□□□□□ -0.23
CD44-207ENST00000425428 PRKRIP1Q9H875 184 aaPredicted RBP13.63□□□□□ -0.23
CD44-207ENST00000425428 SSH2Q76I76 1423 aa13.63□□□□□ -0.23
CD44-207ENST00000425428 TNNT2P45379 298 aaPredicted RBP13.62□□□□□ -0.23
CD44-207ENST00000425428 USP31Q70CQ4 1352 aa13.61□□□□□ -0.23
CD44-207ENST00000425428 PLEKHG5O94827 1062 aa13.61□□□□□ -0.23
CD44-207ENST00000425428 CFAP53Q96M91 514 aa13.61□□□□□ -0.23
CD44-207ENST00000425428 MYBBP1AQ9BQG0 1328 aaKnown RBP13.61□□□□□ -0.23
CD44-207ENST00000425428 PIK3C2AO00443 1686 aa13.61□□□□□ -0.23
CD44-207ENST00000425428 ALS2Q96Q42 1657 aa13.61□□□□□ -0.23
CD44-207ENST00000425428 SOX12O15370 315 aa13.6□□□□□ -0.23
CD44-207ENST00000425428 MAP2P11137 1827 aaKnown RBP13.59□□□□□ -0.23
CD44-207ENST00000425428 PARD3Q8TEW0 1356 aa13.59□□□□□ -0.23
CD44-207ENST00000425428 USP54Q70EL1 1684 aa13.58□□□□□ -0.24
CD44-207ENST00000425428 ZBTB7CA1YPR0 619 aa13.58□□□□□ -0.24
CD44-207ENST00000425428 PPM1GO15355 546 aaPredicted RBP13.58□□□□□ -0.24
CD44-207ENST00000425428 FBXO41Q8TF61 875 aa13.58□□□□□ -0.24
CD44-207ENST00000425428 OVOS2A0A0J9YW53 1432 aa13.57□□□□□ -0.24
CD44-207ENST00000425428 OVOS2Q6IE36 1432 aa13.57□□□□□ -0.24
CD44-207ENST00000425428 AMPHP49418 695 aa13.57□□□□□ -0.24
CD44-207ENST00000425428 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
CD44-207ENST00000425428 JCADQ9P266 1359 aa13.57□□□□□ -0.24
CD44-207ENST00000425428 COL16A1Q07092 1604 aaPredicted RBP13.57□□□□□ -0.24
CD44-207ENST00000425428 GCP02774 474 aa13.56□□□□□ -0.24
CD44-207ENST00000425428 AATKQ6ZMQ8 1374 aa13.56□□□□□ -0.24
CD44-207ENST00000425428 PPP2R1AP30153 589 aa13.55□□□□□ -0.24
CD44-207ENST00000425428 USP19O94966 1318 aa13.55□□□□□ -0.24
CD44-207ENST00000425428 CCER2I3L3R5 266 aa13.55□□□□□ -0.24
CD44-207ENST00000425428 MED1Q15648 1581 aaPredicted RBP13.54□□□□□ -0.24
CD44-207ENST00000425428 HSPA1LP34931 641 aa13.54□□□□□ -0.24
CD44-207ENST00000425428 MIER1Q8N108 512 aa13.54□□□□□ -0.24
CD44-207ENST00000425428 NUDCQ9Y266 331 aa13.54□□□□□ -0.24
CD44-207ENST00000425428 SHPRHQ149N8 1683 aa13.54□□□□□ -0.24
CD44-207ENST00000425428 PNPLA6Q8IY17 1366 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 LTN1O94822 1766 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 MTHFSP49914 203 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 MRS2Q9HD23 443 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 PHRF1Q9P1Y6 1649 aaKnown RBP13.53□□□□□ -0.24
CD44-207ENST00000425428 KIF24Q5T7B8 1368 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 SPATA31A6Q5VVP1 1343 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 COL22A1Q8NFW1 1626 aaPredicted RBP13.53□□□□□ -0.24
CD44-207ENST00000425428 ZC3H6P61129 1189 aaKnown RBP13.53□□□□□ -0.24
CD44-207ENST00000425428 CABLES1Q8TDN4 633 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 PRDM11Q9NQV5 511 aa13.53□□□□□ -0.24
CD44-207ENST00000425428 SLIT3O75094 1523 aa13.52□□□□□ -0.24
CD44-207ENST00000425428 NUTM2BA6NNL0 878 aaPredicted RBP13.52□□□□□ -0.25
CD44-207ENST00000425428 NUTM2EB1AL46 878 aaPredicted RBP13.52□□□□□ -0.25
CD44-207ENST00000425428 RRS1Q15050 365 aaKnown RBP13.52□□□□□ -0.25
CD44-207ENST00000425428 MEX3CQ5U5Q3 659 aaKnown RBP13.52□□□□□ -0.25
CD44-207ENST00000425428 NUTM2AQ8IVF1 878 aaPredicted RBP13.52□□□□□ -0.25
CD44-207ENST00000425428 SMG6Q86US8 1419 aaKnown RBP13.52□□□□□ -0.25
CD44-207ENST00000425428 WDR43Q15061 677 aaKnown RBP eCLIP13.51□□□□□ -0.25
CD44-207ENST00000425428 RTL1A6NKG5 1358 aa13.51□□□□□ -0.25
CD44-207ENST00000425428 FLT4P35916 1363 aa13.51□□□□□ -0.25
CD44-207ENST00000425428 MARF1Q9Y4F3 1742 aaKnown RBP13.51□□□□□ -0.25
CD44-207ENST00000425428 POLKQ9UBT6 870 aa13.5□□□□□ -0.25
CD44-207ENST00000425428 MAP3K19Q56UN5 1328 aa13.49□□□□□ -0.25
CD44-207ENST00000425428 DIAPH1O60610 1272 aaKnown RBP13.49□□□□□ -0.25
CD44-207ENST00000425428 NEFMP07197 916 aa13.49□□□□□ -0.25
CD44-207ENST00000425428 EMILIN1Q9Y6C2 1016 aa13.49□□□□□ -0.25
CD44-207ENST00000425428 ABCA3Q99758 1704 aa13.49□□□□□ -0.25
CD44-207ENST00000425428 EVA1CP58658 441 aa13.48□□□□□ -0.25
CD44-207ENST00000425428 ARHGEF25Q86VW2 580 aa13.48□□□□□ -0.25
CD44-207ENST00000425428 IP6K1Q92551 441 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms