RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 MARCH6O60337 910 aa13.21□□□□□ -0.29
PTCH1-206ENST00000421141 ANO8Q9HCE9 1232 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-206ENST00000421141 STARD3NLO95772 234 aa13.21□□□□□ -0.3
PTCH1-206ENST00000421141 WASLO00401 505 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-206ENST00000421141 RRS1Q15050 365 aaKnown RBP13.2□□□□□ -0.3
PTCH1-206ENST00000421141 SAMD9Q5K651 1589 aa13.2□□□□□ -0.3
PTCH1-206ENST00000421141 BTBD11A6QL63 1104 aa13.2□□□□□ -0.3
PTCH1-206ENST00000421141 UBTFL1P0CB47 393 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-206ENST00000421141 PLCB2Q00722 1185 aa13.2□□□□□ -0.3
PTCH1-206ENST00000421141 DZIP1LQ8IYY4 767 aaKnown RBP13.2□□□□□ -0.3
PTCH1-206ENST00000421141 RASSF8Q8NHQ8 419 aa13.2□□□□□ -0.3
PTCH1-206ENST00000421141 ZFYVE16Q7Z3T8 1539 aa13.19□□□□□ -0.3
PTCH1-206ENST00000421141 KRT28Q7Z3Y7 464 aa13.19□□□□□ -0.3
PTCH1-206ENST00000421141 MAST1Q9Y2H9 1570 aa13.19□□□□□ -0.3
PTCH1-206ENST00000421141 ST18O60284 1047 aa13.19□□□□□ -0.3
PTCH1-206ENST00000421141 RIMS2Q9UQ26 1411 aa13.19□□□□□ -0.3
PTCH1-206ENST00000421141 FAM177BA6PVY3 158 aa13.19□□□□□ -0.3
PTCH1-206ENST00000421141 ZNF652Q9Y2D9 606 aa13.19□□□□□ -0.3
PTCH1-206ENST00000421141 TMOD3Q9NYL9 352 aa13.18□□□□□ -0.3
PTCH1-206ENST00000421141 TCERG1O14776 1098 aaKnown RBP13.18□□□□□ -0.3
PTCH1-206ENST00000421141 PPP2R1AP30153 589 aa13.18□□□□□ -0.3
PTCH1-206ENST00000421141 MFAP1P55081 439 aaKnown RBP13.18□□□□□ -0.3
PTCH1-206ENST00000421141 LMTK3Q96Q04 1460 aa13.18□□□□□ -0.3
PTCH1-206ENST00000421141 PLIN1O60240 522 aa13.18□□□□□ -0.3
PTCH1-206ENST00000421141 TRDNQ13061 729 aa13.18□□□□□ -0.3
PTCH1-206ENST00000421141 NINLQ9Y2I6 1382 aa13.18□□□□□ -0.3
PTCH1-206ENST00000421141 ERC2O15083 957 aa13.18□□□□□ -0.3
PTCH1-206ENST00000421141 ZMYM3Q14202 1370 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 ZPR1O75312 459 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 CSPP1Q1MSJ5 1256 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 PTMSP20962 102 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 NCBP3Q53F19 620 aaKnown RBP13.17□□□□□ -0.3
PTCH1-206ENST00000421141 DISP1Q96F81 1524 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 CCDC27Q2M243 656 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 ERICH2A1L162 156 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 AMOTQ4VCS5 1084 aa13.17□□□□□ -0.3
PTCH1-206ENST00000421141 SCAF11Q99590 1463 aaKnown RBP13.16□□□□□ -0.3
PTCH1-206ENST00000421141 GNAT3A8MTJ3 354 aa13.16□□□□□ -0.3
PTCH1-206ENST00000421141 CENPQQ7L2Z9 268 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-206ENST00000421141 SPRYD3Q8NCJ5 442 aa13.16□□□□□ -0.3
PTCH1-206ENST00000421141 GNL3LQ9NVN8 582 aaKnown RBP13.16□□□□□ -0.3
PTCH1-206ENST00000421141 NPHP3Q7Z494 1330 aa13.16□□□□□ -0.3
PTCH1-206ENST00000421141 SHANK2Q9UPX8 1470 aa13.16□□□□□ -0.3
PTCH1-206ENST00000421141 HDGFL1Q5TGJ6 251 aa13.16□□□□□ -0.3
PTCH1-206ENST00000421141 NEUROD6Q96NK8 337 aa13.16□□□□□ -0.3
PTCH1-206ENST00000421141 NEO1Q92859 1461 aa13.16□□□□□ -0.3
PTCH1-206ENST00000421141 TRAPPC8Q9Y2L5 1435 aa13.15□□□□□ -0.3
PTCH1-206ENST00000421141 CPLX2Q6PUV4 134 aaKnown RBP13.15□□□□□ -0.3
PTCH1-206ENST00000421141 CNNM1Q9NRU3 951 aa13.15□□□□□ -0.3
PTCH1-206ENST00000421141 MYL6BP14649 208 aa13.15□□□□□ -0.3
PTCH1-206ENST00000421141 EXOC5O00471 708 aa13.14□□□□□ -0.31
PTCH1-206ENST00000421141 TCP11L2Q8N4U5 519 aa13.14□□□□□ -0.31
PTCH1-206ENST00000421141 RNF20Q5VTR2 975 aa13.14□□□□□ -0.31
PTCH1-206ENST00000421141 RRP1P56182 461 aaKnown RBP13.14□□□□□ -0.31
PTCH1-206ENST00000421141 KIAA2012Q0VF49 1180 aa13.14□□□□□ -0.31
PTCH1-206ENST00000421141 GBP4Q96PP9 640 aa13.14□□□□□ -0.31
PTCH1-206ENST00000421141 COG6Q9Y2V7 657 aa13.14□□□□□ -0.31
PTCH1-206ENST00000421141 ZKSCAN1P17029 563 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-206ENST00000421141 TBC1D2BQ9UPU7 963 aa13.13□□□□□ -0.31
PTCH1-206ENST00000421141 GNAI3P08754 354 aa13.13□□□□□ -0.31
PTCH1-206ENST00000421141 ADGRF5Q8IZF2 1346 aa13.13□□□□□ -0.31
PTCH1-206ENST00000421141 H3BQV1 296 aa13.13□□□□□ -0.31
PTCH1-206ENST00000421141 IFFO2Q5TF58 517 aa13.13□□□□□ -0.31
PTCH1-206ENST00000421141 ADAMTS8Q9UP79 889 aa13.12□□□□□ -0.31
PTCH1-206ENST00000421141 CHAF1AQ13111 956 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-206ENST00000421141 DHX16O60231 1041 aaKnown RBP13.12□□□□□ -0.31
PTCH1-206ENST00000421141 REC8O95072 547 aa13.12□□□□□ -0.31
PTCH1-206ENST00000421141 MPHOSPH8Q99549 860 aa13.12□□□□□ -0.31
PTCH1-206ENST00000421141 AAMPQ13685 434 aa13.12□□□□□ -0.31
PTCH1-206ENST00000421141 FAM184AQ8NB25 1140 aa13.12□□□□□ -0.31
PTCH1-206ENST00000421141 NCKAP5LQ9HCH0 1330 aa13.12□□□□□ -0.31
PTCH1-206ENST00000421141 DNTTIP2Q5QJE6 756 aaKnown RBP13.12□□□□□ -0.31
PTCH1-206ENST00000421141 SYAP1Q96A49 352 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-206ENST00000421141 NBPF8Q3BBV2 869 aa13.11□□□□□ -0.31
PTCH1-206ENST00000421141 TWISTNBQ3B726 338 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-206ENST00000421141 FCHSD2O94868 740 aa13.11□□□□□ -0.31
PTCH1-206ENST00000421141 ERC1Q8IUD2 1116 aa13.11□□□□□ -0.31
PTCH1-206ENST00000421141 TPM4P67936 248 aa13.11□□□□□ -0.31
PTCH1-206ENST00000421141 CCAR1Q8IX12 1150 aaKnown RBP13.11□□□□□ -0.31
PTCH1-206ENST00000421141 DRC7Q8IY82 874 aa13.11□□□□□ -0.31
PTCH1-206ENST00000421141 SLC3A2P08195 630 aaKnown RBP13.1□□□□□ -0.31
PTCH1-206ENST00000421141 CCDC57Q2TAC2 916 aa13.1□□□□□ -0.31
PTCH1-206ENST00000421141 C14orf93Q9H972 538 aaKnown RBP13.1□□□□□ -0.31
PTCH1-206ENST00000421141 RPRD2Q5VT52 1461 aaKnown RBP13.1□□□□□ -0.31
PTCH1-206ENST00000421141 GCC2Q8IWJ2 1684 aa13.1□□□□□ -0.31
PTCH1-206ENST00000421141 TRIM29Q14134 588 aa13.1□□□□□ -0.31
PTCH1-206ENST00000421141 MPRIPQ6WCQ1 1025 aa13.1□□□□□ -0.31
PTCH1-206ENST00000421141 FYB1O15117 783 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 C8orf37Q96NL8 207 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 HECW2Q9P2P5 1572 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 TTC21BQ7Z4L5 1316 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 KDM6BO15054 1643 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 SHROOM2Q13796 1616 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 MAPKBP1O60336 1514 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 CCT4P50991 539 aaKnown RBP13.09□□□□□ -0.31
PTCH1-206ENST00000421141 NFXL1Q6ZNB6 911 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 C19orf44Q9H6X5 657 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 NOP58Q9Y2X3 529 aaKnown RBP13.09□□□□□ -0.31
PTCH1-206ENST00000421141 PREX2Q70Z35 1606 aa13.09□□□□□ -0.31
PTCH1-206ENST00000421141 WASHC4Q2M389 1173 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms