RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 XIRP1Q702N8 1843 aaKnown RBP8.15□□□□□ -1.11
HMGB3-202ENST00000419110 ADGRL3Q9HAR2 1447 aa8.14□□□□□ -1.11
HMGB3-202ENST00000419110 NPC1L1Q9UHC9 1359 aa8.14□□□□□ -1.11
HMGB3-202ENST00000419110 SRPK2P78362 688 aaKnown RBP8.14□□□□□ -1.11
HMGB3-202ENST00000419110 PUS7Q96PZ0 661 aaKnown RBP8.14□□□□□ -1.11
HMGB3-202ENST00000419110 TBX22Q9Y458 520 aa8.14□□□□□ -1.11
HMGB3-202ENST00000419110 ANKARQ7Z5J8 1434 aa8.13□□□□□ -1.11
HMGB3-202ENST00000419110 SIRT1Q96EB6 747 aa8.13□□□□□ -1.11
HMGB3-202ENST00000419110 SLC26A8Q96RN1 970 aa8.13□□□□□ -1.11
HMGB3-202ENST00000419110 PRKRIP1Q9H875 184 aaPredicted RBP8.13□□□□□ -1.11
HMGB3-202ENST00000419110 LRRC7Q96NW7 1537 aa8.13□□□□□ -1.11
HMGB3-202ENST00000419110 PPIP5K1Q6PFW1 1433 aa8.12□□□□□ -1.11
HMGB3-202ENST00000419110 A0A1W2PP64 1363 aa8.12□□□□□ -1.11
HMGB3-202ENST00000419110 SHPRHQ149N8 1683 aa8.12□□□□□ -1.11
HMGB3-202ENST00000419110 MYBBP1AQ9BQG0 1328 aaKnown RBP8.12□□□□□ -1.11
HMGB3-202ENST00000419110 KNSTRNQ9Y448 316 aa8.12□□□□□ -1.11
HMGB3-202ENST00000419110 BRD4O60885 1362 aaPredicted RBP8.11□□□□□ -1.11
HMGB3-202ENST00000419110 GALR2O43603 387 aaPredicted RBP8.11□□□□□ -1.11
HMGB3-202ENST00000419110 RALBP1Q15311 655 aa8.11□□□□□ -1.11
HMGB3-202ENST00000419110 TMC1Q8TDI8 760 aa8.11□□□□□ -1.11
HMGB3-202ENST00000419110 PANK3Q9H999 370 aa8.11□□□□□ -1.11
HMGB3-202ENST00000419110 CD163L1Q9NR16 1453 aa8.11□□□□□ -1.11
HMGB3-202ENST00000419110 PIK3C2AO00443 1686 aa8.11□□□□□ -1.11
HMGB3-202ENST00000419110 EDC4Q6P2E9 1401 aaKnown RBP8.11□□□□□ -1.11
HMGB3-202ENST00000419110 CENPBP07199 599 aaPredicted RBP8.1□□□□□ -1.11
HMGB3-202ENST00000419110 TERF2IPQ9NYB0 399 aa8.1□□□□□ -1.11
HMGB3-202ENST00000419110 DCCP43146 1447 aa8.1□□□□□ -1.11
HMGB3-202ENST00000419110 MARF1Q9Y4F3 1742 aaKnown RBP8.09□□□□□ -1.11
HMGB3-202ENST00000419110 CGNL1Q0VF96 1302 aa8.09□□□□□ -1.11
HMGB3-202ENST00000419110 MAP2P11137 1827 aaKnown RBP8.09□□□□□ -1.11
HMGB3-202ENST00000419110 KDM4FA0A1W2PPD8 638 aa8.09□□□□□ -1.11
HMGB3-202ENST00000419110 HDGFL2Q7Z4V5 671 aaPredicted RBP8.09□□□□□ -1.11
HMGB3-202ENST00000419110 WAPLQ7Z5K2 1190 aa8.09□□□□□ -1.11
HMGB3-202ENST00000419110 YTHDC1Q96MU7 727 aaKnown RBP8.09□□□□□ -1.11
HMGB3-202ENST00000419110 PHF12Q96QT6 1004 aa8.09□□□□□ -1.11
HMGB3-202ENST00000419110 MRS2Q9HD23 443 aa8.09□□□□□ -1.11
HMGB3-202ENST00000419110 CABP2Q9NPB3 220 aa8.09□□□□□ -1.11
HMGB3-202ENST00000419110 AMOTL2Q9Y2J4 779 aa8.09□□□□□ -1.11
HMGB3-202ENST00000419110 LTN1O94822 1766 aa8.08□□□□□ -1.12
HMGB3-202ENST00000419110 WASLO00401 505 aaPredicted RBP8.08□□□□□ -1.12
HMGB3-202ENST00000419110 NLRP13Q86W25 1043 aa8.08□□□□□ -1.12
HMGB3-202ENST00000419110 CDK19Q9BWU1 502 aa8.08□□□□□ -1.12
HMGB3-202ENST00000419110 NCKAP5LQ9HCH0 1330 aa8.07□□□□□ -1.12
HMGB3-202ENST00000419110 TRPM3Q9HCF6 1732 aaPredicted RBP8.07□□□□□ -1.12
HMGB3-202ENST00000419110 PLEKHG5O94827 1062 aa8.07□□□□□ -1.12
HMGB3-202ENST00000419110 KCNA6P17658 529 aa8.07□□□□□ -1.12
HMGB3-202ENST00000419110 CNGB1Q14028 1251 aaPredicted RBP8.07□□□□□ -1.12
HMGB3-202ENST00000419110 CC2D1BQ5T0F9 858 aaKnown RBP8.07□□□□□ -1.12
HMGB3-202ENST00000419110 CPSF1Q10570 1443 aaKnown RBP8.06□□□□□ -1.12
HMGB3-202ENST00000419110 NCOA3Q9Y6Q9 1424 aa8.06□□□□□ -1.12
HMGB3-202ENST00000419110 AMER1Q5JTC6 1135 aaPredicted RBP8.06□□□□□ -1.12
HMGB3-202ENST00000419110 USP6P35125 1406 aa8.05□□□□□ -1.12
HMGB3-202ENST00000419110 PER1O15534 1290 aaPredicted RBP8.05□□□□□ -1.12
HMGB3-202ENST00000419110 CDK12Q9NYV4 1490 aaPredicted RBP8.05□□□□□ -1.12
HMGB3-202ENST00000419110 ALS2Q96Q42 1657 aa8.05□□□□□ -1.12
HMGB3-202ENST00000419110 BLMP54132 1417 aaPredicted RBP8.04□□□□□ -1.12
HMGB3-202ENST00000419110 NHSL1Q5SYE7 1610 aa8.04□□□□□ -1.12
HMGB3-202ENST00000419110 PHRF1Q9P1Y6 1649 aaKnown RBP8.04□□□□□ -1.12
HMGB3-202ENST00000419110 ABCA3Q99758 1704 aa8.04□□□□□ -1.12
HMGB3-202ENST00000419110 HSPA2P54652 639 aa8.04□□□□□ -1.12
HMGB3-202ENST00000419110 C14orf37Q86TY3 774 aa8.04□□□□□ -1.12
HMGB3-202ENST00000419110 NUDT16Q96DE0 195 aaKnown RBP8.04□□□□□ -1.12
HMGB3-202ENST00000419110 TSPYL2Q9H2G4 693 aaPredicted RBP8.04□□□□□ -1.12
HMGB3-202ENST00000419110 SLC12A5Q9H2X9 1139 aa8.04□□□□□ -1.12
HMGB3-202ENST00000419110 CCDC61Q9Y6R9 512 aa8.04□□□□□ -1.12
HMGB3-202ENST00000419110 PRR36Q9H6K5 1346 aa8.03□□□□□ -1.12
HMGB3-202ENST00000419110 SMG6Q86US8 1419 aaKnown RBP8.03□□□□□ -1.12
HMGB3-202ENST00000419110 POLR3AO14802 1390 aaPredicted RBP8.03□□□□□ -1.12
HMGB3-202ENST00000419110 INSRP06213 1382 aa8.03□□□□□ -1.12
HMGB3-202ENST00000419110 MSH6P52701 1360 aa8.03□□□□□ -1.12
HMGB3-202ENST00000419110 CRYBG1Q9Y4K1 1723 aa8.03□□□□□ -1.12
HMGB3-202ENST00000419110 OVOS2A0A0J9YW53 1432 aa8.03□□□□□ -1.12
HMGB3-202ENST00000419110 OVOS2Q6IE36 1432 aa8.03□□□□□ -1.12
HMGB3-202ENST00000419110 TMEM94Q12767 1356 aa8.02□□□□□ -1.13
HMGB3-202ENST00000419110 FAM208AQ9UK61 1670 aaKnown RBP8.02□□□□□ -1.13
HMGB3-202ENST00000419110 MED1Q15648 1581 aaPredicted RBP8.01□□□□□ -1.13
HMGB3-202ENST00000419110 COL3A1P02461 1466 aaPredicted RBP8.01□□□□□ -1.13
HMGB3-202ENST00000419110 FKBP8Q14318 412 aa8.01□□□□□ -1.13
HMGB3-202ENST00000419110 MORC1Q86VD1 984 aa8.01□□□□□ -1.13
HMGB3-202ENST00000419110 CARD14Q9BXL6 1004 aa8.01□□□□□ -1.13
HMGB3-202ENST00000419110 CABP1Q9NZU7 370 aa8.01□□□□□ -1.13
HMGB3-202ENST00000419110 MST1RQ04912 1400 aa8.01□□□□□ -1.13
HMGB3-202ENST00000419110 TTC21AQ8NDW8 1320 aa8.01□□□□□ -1.13
HMGB3-202ENST00000419110 PEAK1Q9H792 1746 aa8□□□□□ -1.13
HMGB3-202ENST00000419110 PPP2R1AP30153 589 aa8□□□□□ -1.13
HMGB3-202ENST00000419110 CFAP53Q96M91 514 aa8□□□□□ -1.13
HMGB3-202ENST00000419110 C1orf167Q5SNV9 1468 aa8□□□□□ -1.13
HMGB3-202ENST00000419110 RGPD1P0DJD0 1748 aa7.99□□□□□ -1.13
HMGB3-202ENST00000419110 HNRNPUQ00839 825 aaKnown RBP eCLIP7.99□□□□□ -1.13
HMGB3-202ENST00000419110 WDR43Q15061 677 aaKnown RBP eCLIP7.99□□□□□ -1.13
HMGB3-202ENST00000419110 SSH2Q76I76 1423 aa7.99□□□□□ -1.13
HMGB3-202ENST00000419110 PROSER2Q86WR7 435 aaPredicted RBP7.99□□□□□ -1.13
HMGB3-202ENST00000419110 FAM9BQ8IZU0 186 aa7.99□□□□□ -1.13
HMGB3-202ENST00000419110 PLCD3Q8N3E9 789 aa7.99□□□□□ -1.13
HMGB3-202ENST00000419110 MS4A3Q96HJ5 214 aa7.99□□□□□ -1.13
HMGB3-202ENST00000419110 ACEP12821 1306 aa7.99□□□□□ -1.13
HMGB3-202ENST00000419110 SLIT3O75094 1523 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 NFAT5O94916 1531 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 PLEKHG3A1L390 1219 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 NUTM2FA1L443 756 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 1093.3 ms