RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 CABP1Q9NZU7 370 aa26.24■■□□□ 1.79
PTCD3-204ENST00000418628 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.24■■□□□ 1.79
PTCD3-204ENST00000418628 PLCH1Q4KWH8 1693 aa26.23■■□□□ 1.79
PTCD3-204ENST00000418628 EIF4G2P78344 907 aaKnown RBP eCLIP26.21■■□□□ 1.79
PTCD3-204ENST00000418628 NWD2Q9ULI1 1742 aa26.21■■□□□ 1.79
PTCD3-204ENST00000418628 TMF1P82094 1093 aa26.2■■□□□ 1.78
PTCD3-204ENST00000418628 HSPA5P11021 654 aaKnown RBP26.19■■□□□ 1.78
PTCD3-204ENST00000418628 KIF20BQ96Q89 1820 aa26.18■■□□□ 1.78
PTCD3-204ENST00000418628 SLIT3O75094 1523 aa26.17■■□□□ 1.78
PTCD3-204ENST00000418628 NRAPQ86VF7 1730 aa26.17■■□□□ 1.78
PTCD3-204ENST00000418628 A0A1W2PP64 1363 aa26.16■■□□□ 1.78
PTCD3-204ENST00000418628 COL14A1Q05707 1796 aaKnown RBP26.15■■□□□ 1.78
PTCD3-204ENST00000418628 ZNF692Q9BU19 519 aaPredicted RBP26.13■■□□□ 1.77
PTCD3-204ENST00000418628 KTN1Q86UP2 1357 aaKnown RBP26.12■■□□□ 1.77
PTCD3-204ENST00000418628 RGS17Q9UGC6 210 aaPredicted RBP26.12■■□□□ 1.77
PTCD3-204ENST00000418628 EDC4Q6P2E9 1401 aaKnown RBP26.12■■□□□ 1.77
PTCD3-204ENST00000418628 USP19O94966 1318 aa26.12■■□□□ 1.77
PTCD3-204ENST00000418628 ANKRD36BQ8N2N9 1353 aa26.11■■□□□ 1.77
PTCD3-204ENST00000418628 NUTM2BA6NNL0 878 aaPredicted RBP26.11■■□□□ 1.77
PTCD3-204ENST00000418628 NUTM2EB1AL46 878 aaPredicted RBP26.11■■□□□ 1.77
PTCD3-204ENST00000418628 CDCA8Q53HL2 280 aa26.11■■□□□ 1.77
PTCD3-204ENST00000418628 NUTM2AQ8IVF1 878 aaPredicted RBP26.11■■□□□ 1.77
PTCD3-204ENST00000418628 SLC12A5Q9H2X9 1139 aa26.11■■□□□ 1.77
PTCD3-204ENST00000418628 LMO7Q8WWI1 1683 aa26.09■■□□□ 1.77
PTCD3-204ENST00000418628 SLIT2O94813 1529 aa26.09■■□□□ 1.77
PTCD3-204ENST00000418628 ANKRD26Q9UPS8 1709 aa26.08■■□□□ 1.77
PTCD3-204ENST00000418628 LTN1O94822 1766 aa26.08■■□□□ 1.77
PTCD3-204ENST00000418628 PAK3O75914 559 aaPredicted RBP26.08■■□□□ 1.77
PTCD3-204ENST00000418628 TTC21BQ7Z4L5 1316 aa26.08■■□□□ 1.77
PTCD3-204ENST00000418628 TTC21AQ8NDW8 1320 aa26.08■■□□□ 1.77
PTCD3-204ENST00000418628 COL18A1P39060 1754 aa26.07■■□□□ 1.76
PTCD3-204ENST00000418628 TMC1Q8TDI8 760 aa26.06■■□□□ 1.76
PTCD3-204ENST00000418628 CABLES1Q8TDN4 633 aa26.06■■□□□ 1.76
PTCD3-204ENST00000418628 NFAT5O94916 1531 aa26.05■■□□□ 1.76
PTCD3-204ENST00000418628 LMOD2Q6P5Q4 547 aa26.05■■□□□ 1.76
PTCD3-204ENST00000418628 RGPD5Q99666 1765 aa26.05■■□□□ 1.76
PTCD3-204ENST00000418628 MEX3CQ5U5Q3 659 aaKnown RBP26.04■■□□□ 1.76
PTCD3-204ENST00000418628 TERF2IPQ9NYB0 399 aa26.04■■□□□ 1.76
PTCD3-204ENST00000418628 USP31Q70CQ4 1352 aa26.04■■□□□ 1.76
PTCD3-204ENST00000418628 ADAMTS2O95450 1211 aa26.03■■□□□ 1.76
PTCD3-204ENST00000418628 HDGFL2Q7Z4V5 671 aaPredicted RBP26.03■■□□□ 1.76
PTCD3-204ENST00000418628 ABTB2Q8N961 1025 aa26.03■■□□□ 1.76
PTCD3-204ENST00000418628 PHF23Q9BUL5 403 aaPredicted RBP26.03■■□□□ 1.76
PTCD3-204ENST00000418628 OVOS2A0A0J9YW53 1432 aa26.03■■□□□ 1.76
PTCD3-204ENST00000418628 OVOS2Q6IE36 1432 aa26.03■■□□□ 1.76
PTCD3-204ENST00000418628 BCL9LQ86UU0 1499 aa26.02■■□□□ 1.76
PTCD3-204ENST00000418628 C11orf95C9JLR9 678 aaPredicted RBP26.01■■□□□ 1.75
PTCD3-204ENST00000418628 AFF2P51816 1311 aa26.01■■□□□ 1.75
PTCD3-204ENST00000418628 FNBP4Q8N3X1 1017 aaPredicted RBP26■■□□□ 1.75
PTCD3-204ENST00000418628 C8orf37Q96NL8 207 aa26■■□□□ 1.75
PTCD3-204ENST00000418628 CPDO75976 1380 aa25.99■■□□□ 1.75
PTCD3-204ENST00000418628 ABCC6O95255 1503 aa25.98■■□□□ 1.75
PTCD3-204ENST00000418628 NUTM2GQ5VZR2 741 aa25.98■■□□□ 1.75
PTCD3-204ENST00000418628 NLRP13Q86W25 1043 aa25.98■■□□□ 1.75
PTCD3-204ENST00000418628 ATRNO75882 1429 aa25.97■■□□□ 1.75
PTCD3-204ENST00000418628 KIF7Q2M1P5 1343 aa25.95■■□□□ 1.75
PTCD3-204ENST00000418628 ZNF772Q68DY9 489 aaPredicted RBP25.95■■□□□ 1.74
PTCD3-204ENST00000418628 POTEAQ6S8J7 498 aa25.95■■□□□ 1.74
PTCD3-204ENST00000418628 GLI3P10071 1580 aa25.95■■□□□ 1.74
PTCD3-204ENST00000418628 KIAA0232Q92628 1395 aa25.95■■□□□ 1.74
PTCD3-204ENST00000418628 NLRP6P59044 892 aa25.94■■□□□ 1.74
PTCD3-204ENST00000418628 NGLY1Q96IV0 654 aa25.94■■□□□ 1.74
PTCD3-204ENST00000418628 NSD3Q9BZ95 1437 aa25.92■■□□□ 1.74
PTCD3-204ENST00000418628 HAP1P54257 671 aaPredicted RBP25.92■■□□□ 1.74
PTCD3-204ENST00000418628 NME9Q86XW9 330 aa25.92■■□□□ 1.74
PTCD3-204ENST00000418628 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.92■■□□□ 1.74
PTCD3-204ENST00000418628 WNK3Q9BYP7 1800 aa25.92■■□□□ 1.74
PTCD3-204ENST00000418628 CAMTA1Q9Y6Y1 1673 aa25.92■■□□□ 1.74
PTCD3-204ENST00000418628 FAM83GA6ND36 823 aa25.91■■□□□ 1.74
PTCD3-204ENST00000418628 GCP02774 474 aa25.91■■□□□ 1.74
PTCD3-204ENST00000418628 PLEKHG5O94827 1062 aa25.9■■□□□ 1.74
PTCD3-204ENST00000418628 CARD14Q9BXL6 1004 aa25.9■■□□□ 1.74
PTCD3-204ENST00000418628 MAP2P11137 1827 aaKnown RBP25.9■■□□□ 1.74
PTCD3-204ENST00000418628 CDK12Q9NYV4 1490 aaPredicted RBP25.9■■□□□ 1.74
PTCD3-204ENST00000418628 ZRANB1Q9UGI0 708 aa25.89■■□□□ 1.74
PTCD3-204ENST00000418628 CCDC7Q96M83 1385 aa25.89■■□□□ 1.74
PTCD3-204ENST00000418628 ILDR2Q71H61 639 aa25.88■■□□□ 1.73
PTCD3-204ENST00000418628 USP21Q9UK80 565 aa25.88■■□□□ 1.73
PTCD3-204ENST00000418628 BRWD3Q6RI45 1802 aa25.87■■□□□ 1.73
PTCD3-204ENST00000418628 FAM208AQ9UK61 1670 aaKnown RBP25.86■■□□□ 1.73
PTCD3-204ENST00000418628 WASHC2AQ641Q2 1341 aa25.86■■□□□ 1.73
PTCD3-204ENST00000418628 UNC5CLQ8IV45 518 aa25.85■■□□□ 1.73
PTCD3-204ENST00000418628 PRDM11Q9NQV5 511 aa25.85■■□□□ 1.73
PTCD3-204ENST00000418628 COL5A2P05997 1499 aaPredicted RBP25.85■■□□□ 1.73
PTCD3-204ENST00000418628 AATKQ6ZMQ8 1374 aa25.84■■□□□ 1.73
PTCD3-204ENST00000418628 ZC3H6P61129 1189 aaKnown RBP25.84■■□□□ 1.73
PTCD3-204ENST00000418628 KCNH5Q8NCM2 988 aa25.84■■□□□ 1.73
PTCD3-204ENST00000418628 PEAK1Q9H792 1746 aa25.83■■□□□ 1.73
PTCD3-204ENST00000418628 FYB1O15117 783 aa25.83■■□□□ 1.73
PTCD3-204ENST00000418628 THSD7AQ9UPZ6 1657 aa25.83■■□□□ 1.73
PTCD3-204ENST00000418628 ZEB1P37275 1124 aaPredicted RBP25.82■■□□□ 1.72
PTCD3-204ENST00000418628 POLR3GLQ9BT43 218 aa25.82■■□□□ 1.72
PTCD3-204ENST00000418628 TRPC5Q9UL62 973 aaPredicted RBP25.82■■□□□ 1.72
PTCD3-204ENST00000418628 ARHGEF25Q86VW2 580 aa25.81■■□□□ 1.72
PTCD3-204ENST00000418628 CHRNA2Q15822 529 aa25.8■■□□□ 1.72
PTCD3-204ENST00000418628 QTRT2Q9H974 415 aaKnown RBP25.8■■□□□ 1.72
PTCD3-204ENST00000418628 BTG4Q9NY30 223 aa25.8■■□□□ 1.72
PTCD3-204ENST00000418628 RGS12O14924 1447 aa25.8■■□□□ 1.72
PTCD3-204ENST00000418628 RGPD2P0DJD1 1756 aa25.79■■□□□ 1.72
PTCD3-204ENST00000418628 VPS72Q15906 364 aa25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms