RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CCDC113Q9H0I3 377 aa15.76■□□□□ 0.11
CCDC88A-204ENST00000413716 SETD5Q9C0A6 1442 aa15.76■□□□□ 0.11
CCDC88A-204ENST00000413716 C6orf163Q5TEZ5 329 aa15.76■□□□□ 0.11
CCDC88A-204ENST00000413716 POTEJP0CG39 1038 aa15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 TAF4BQ92750 862 aa15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 C22orf23Q9BZE7 217 aa15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 V9GYY5 206 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 POLR3GO15318 223 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 CETN2P41208 172 aa15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 TIGD1Q96MW7 591 aa15.75■□□□□ 0.11
CCDC88A-204ENST00000413716 PPM1FP49593 454 aaPredicted RBP15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 UBE4AQ14139 1066 aa15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 FYB1O15117 783 aa15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 CCDC27Q2M243 656 aa15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 ZNF397Q8NF99 534 aaPredicted RBP15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 SOGA3Q5TF21 947 aa15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 NGDNQ8NEJ9 315 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 WDR66Q8TBY9 1149 aa15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 RRP1P56182 461 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 DZIP1LQ8IYY4 767 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-204ENST00000413716 FERP16591 822 aa15.73■□□□□ 0.11
CCDC88A-204ENST00000413716 FAM114A1Q8IWE2 563 aa15.73■□□□□ 0.11
CCDC88A-204ENST00000413716 LTV1Q96GA3 475 aaPredicted RBP15.73■□□□□ 0.11
CCDC88A-204ENST00000413716 IFFO1Q0D2I5 559 aa15.73■□□□□ 0.11
CCDC88A-204ENST00000413716 SSR1P43307 286 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-204ENST00000413716 MLECQ14165 292 aa15.73■□□□□ 0.11
CCDC88A-204ENST00000413716 NAP1L3Q99457 506 aaPredicted RBP15.73■□□□□ 0.11
CCDC88A-204ENST00000413716 TRAK2O60296 914 aa15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 RNF187Q5TA31 235 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 TNMDQ9H2S6 317 aa15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 IBSPP21815 317 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 NFKBIBQ15653 356 aa15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 CNTROBQ8N137 903 aa15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 EPB41L2O43491 1005 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 BAZ1BQ9UIG0 1483 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-204ENST00000413716 SPECC1LQ69YQ0 1117 aa15.71■□□□□ 0.11
CCDC88A-204ENST00000413716 MATR3P43243 847 aaKnown RBP eCLIP15.71■□□□□ 0.11
CCDC88A-204ENST00000413716 IMMTQ16891 758 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-204ENST00000413716 MCM2P49736 904 aa15.71■□□□□ 0.11
CCDC88A-204ENST00000413716 ERC1Q8IUD2 1116 aa15.71■□□□□ 0.11
CCDC88A-204ENST00000413716 TEFQ10587 303 aa15.71■□□□□ 0.1
CCDC88A-204ENST00000413716 GOPCQ9HD26 462 aa15.71■□□□□ 0.1
CCDC88A-204ENST00000413716 STK38Q15208 465 aa15.7■□□□□ 0.1
CCDC88A-204ENST00000413716 HOOK3Q86VS8 718 aa15.7■□□□□ 0.1
CCDC88A-204ENST00000413716 WASHC4Q2M389 1173 aa15.7■□□□□ 0.1
CCDC88A-204ENST00000413716 KIF2AO00139 706 aaPredicted RBP15.7■□□□□ 0.1
CCDC88A-204ENST00000413716 UBXN4Q92575 508 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 MYBBP1AQ9BQG0 1328 aaKnown RBP15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 GSTTP1A0A1W2PQM5 241 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 ARHGAP29Q52LW3 1261 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 WASHC2AQ641Q2 1341 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 NGEFQ8N5V2 710 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 BCL2L13Q9BXK5 485 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 CRBNQ96SW2 442 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 HOMER2Q9NSB8 354 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 KIF27Q86VH2 1401 aa15.69■□□□□ 0.1
CCDC88A-204ENST00000413716 EVA1CP58658 441 aa15.68■□□□□ 0.1
CCDC88A-204ENST00000413716 RRP7AQ9Y3A4 280 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-204ENST00000413716 KIF3CO14782 793 aa15.68■□□□□ 0.1
CCDC88A-204ENST00000413716 HIP1O00291 1037 aa15.68■□□□□ 0.1
CCDC88A-204ENST00000413716 DNAJC2Q99543 621 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-204ENST00000413716 TNNT1P13805 278 aa15.68■□□□□ 0.1
CCDC88A-204ENST00000413716 DDX46Q7L014 1031 aaKnown RBP15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 MTMR7Q9Y216 660 aa15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 PPP1R12BO60237 982 aaPredicted RBP15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 CDC45O75419 566 aa15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 CASQ1P31415 396 aa15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 TAOK3Q9H2K8 898 aa15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 ZHX3Q9H4I2 956 aa15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 CCDC160A6NGH7 325 aa15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 NOL3O60936 208 aaKnown RBP15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 SREK1Q8WXA9 508 aaKnown RBP15.67■□□□□ 0.1
CCDC88A-204ENST00000413716 COMMD10Q9Y6G5 202 aa15.66■□□□□ 0.1
CCDC88A-204ENST00000413716 TBC1D2BQ9UPU7 963 aa15.66■□□□□ 0.1
CCDC88A-204ENST00000413716 ME1P48163 572 aa15.66■□□□□ 0.1
CCDC88A-204ENST00000413716 ZBED9Q6R2W3 1325 aa15.66■□□□□ 0.1
CCDC88A-204ENST00000413716 TMCO5BA8MYB1 307 aa15.66■□□□□ 0.1
CCDC88A-204ENST00000413716 FIBPO43427 364 aa15.65■□□□□ 0.1
CCDC88A-204ENST00000413716 EIF2S2P20042 333 aaKnown RBP15.65■□□□□ 0.1
CCDC88A-204ENST00000413716 MNAT1P51948 309 aa15.65■□□□□ 0.1
CCDC88A-204ENST00000413716 GTF2A1P52655 376 aaPredicted RBP15.65■□□□□ 0.1
CCDC88A-204ENST00000413716 CEBPZQ03701 1054 aaKnown RBP15.65■□□□□ 0.1
CCDC88A-204ENST00000413716 SETSIPP0DME0 302 aa15.65■□□□□ 0.1
CCDC88A-204ENST00000413716 EID1Q9Y6B2 187 aa15.65■□□□□ 0.1
CCDC88A-204ENST00000413716 PRPF40AO75400 957 aaKnown RBP15.64■□□□□ 0.1
CCDC88A-204ENST00000413716 GTPBP4Q9BZE4 634 aaKnown RBP15.64■□□□□ 0.1
CCDC88A-204ENST00000413716 PABPN1LA6NDY0 278 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 SPA17Q15506 151 aa15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 PLIN1O60240 522 aa15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 CGNQ9P2M7 1197 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 COG6Q9Y2V7 657 aa15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 VPS36Q86VN1 386 aa15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 TRIM22Q8IYM9 498 aa15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 AAMPQ13685 434 aa15.64■□□□□ 0.09
CCDC88A-204ENST00000413716 KIF5CO60282 957 aa15.63■□□□□ 0.09
CCDC88A-204ENST00000413716 ATP2B1P20020 1258 aa15.63■□□□□ 0.09
CCDC88A-204ENST00000413716 KDM4AO75164 1064 aa15.63■□□□□ 0.09
CCDC88A-204ENST00000413716 API5Q9BZZ5 524 aaKnown RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms