RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 RRS1Q15050 365 aaKnown RBP10.81□□□□□ -0.68
SYNE1-211ENST00000413186 PNISRQ8TF01 805 aaKnown RBP10.81□□□□□ -0.68
SYNE1-211ENST00000413186 RNF17Q9BXT8 1623 aaKnown RBP10.81□□□□□ -0.68
SYNE1-211ENST00000413186 ZC3H6P61129 1189 aaKnown RBP10.81□□□□□ -0.68
SYNE1-211ENST00000413186 STRN4Q9NRL3 753 aa10.81□□□□□ -0.68
SYNE1-211ENST00000413186 NUTM2BA6NNL0 878 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-211ENST00000413186 NUTM2EB1AL46 878 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-211ENST00000413186 UBAP1LF5GYI3 381 aa10.81□□□□□ -0.68
SYNE1-211ENST00000413186 NUTM2AQ8IVF1 878 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-211ENST00000413186 COL17A1Q9UMD9 1497 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-211ENST00000413186 SPG7Q9UQ90 795 aa10.8□□□□□ -0.68
SYNE1-211ENST00000413186 SPHKAPQ2M3C7 1700 aa10.79□□□□□ -0.68
SYNE1-211ENST00000413186 PIK3C2GO75747 1445 aa10.79□□□□□ -0.68
SYNE1-211ENST00000413186 TRIM44Q96DX7 344 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-211ENST00000413186 ZNF330Q9Y3S2 320 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-211ENST00000413186 ZC3H13Q5T200 1668 aaKnown RBP10.79□□□□□ -0.68
SYNE1-211ENST00000413186 ASXL1Q8IXJ9 1541 aa10.79□□□□□ -0.68
SYNE1-211ENST00000413186 LMTK3Q96Q04 1460 aa10.79□□□□□ -0.68
SYNE1-211ENST00000413186 HSP90AB1P08238 724 aaKnown RBP10.79□□□□□ -0.68
SYNE1-211ENST00000413186 TSPYL4Q9UJ04 414 aa10.78□□□□□ -0.68
SYNE1-211ENST00000413186 FYB1O15117 783 aa10.78□□□□□ -0.68
SYNE1-211ENST00000413186 CAMSAP1Q5T5Y3 1602 aa10.78□□□□□ -0.68
SYNE1-211ENST00000413186 OS9Q13438 667 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-211ENST00000413186 CEP152O94986 1710 aa10.77□□□□□ -0.69
SYNE1-211ENST00000413186 USP35Q9P2H5 1018 aa10.77□□□□□ -0.69
SYNE1-211ENST00000413186 CLTCL1P53675 1640 aa10.77□□□□□ -0.69
SYNE1-211ENST00000413186 ADGRB3O60242 1522 aa10.77□□□□□ -0.69
SYNE1-211ENST00000413186 ZNF530Q6P9A1 599 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-211ENST00000413186 ITPRIPQ8IWB1 547 aa10.76□□□□□ -0.69
SYNE1-211ENST00000413186 METP08581 1390 aa10.76□□□□□ -0.69
SYNE1-211ENST00000413186 SYTL4Q96C24 671 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-211ENST00000413186 DDRGK1Q96HY6 314 aa10.76□□□□□ -0.69
SYNE1-211ENST00000413186 PLEKHG3A1L390 1219 aa10.76□□□□□ -0.69
SYNE1-211ENST00000413186 FAM135BQ49AJ0 1406 aa10.76□□□□□ -0.69
SYNE1-211ENST00000413186 CLTCQ00610 1675 aaKnown RBP10.75□□□□□ -0.69
SYNE1-211ENST00000413186 ELL2O00472 640 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-211ENST00000413186 ZKSCAN2Q63HK3 967 aa10.75□□□□□ -0.69
SYNE1-211ENST00000413186 LRRC59Q96AG4 307 aaKnown RBP10.75□□□□□ -0.69
SYNE1-211ENST00000413186 EMILIN1Q9Y6C2 1016 aa10.75□□□□□ -0.69
SYNE1-211ENST00000413186 E9PCH4 1651 aa10.75□□□□□ -0.69
SYNE1-211ENST00000413186 AMOTQ4VCS5 1084 aa10.75□□□□□ -0.69
SYNE1-211ENST00000413186 WDR63Q8IWG1 891 aa10.75□□□□□ -0.69
SYNE1-211ENST00000413186 SYNMO15061 1565 aa10.75□□□□□ -0.69
SYNE1-211ENST00000413186 NPC1L1Q9UHC9 1359 aa10.75□□□□□ -0.69
SYNE1-211ENST00000413186 API5Q9BZZ5 524 aaKnown RBP10.74□□□□□ -0.69
SYNE1-211ENST00000413186 A0A1W2PP64 1363 aa10.74□□□□□ -0.69
SYNE1-211ENST00000413186 PPRC1Q5VV67 1664 aaKnown RBP10.74□□□□□ -0.69
SYNE1-211ENST00000413186 DDX58O95786 925 aaKnown RBP10.74□□□□□ -0.69
SYNE1-211ENST00000413186 EDC4Q6P2E9 1401 aaKnown RBP10.74□□□□□ -0.69
SYNE1-211ENST00000413186 HMMRO75330 724 aa10.74□□□□□ -0.69
SYNE1-211ENST00000413186 NFE2L2Q16236 605 aa10.74□□□□□ -0.69
SYNE1-211ENST00000413186 RWDD1Q9H446 243 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-211ENST00000413186 HMGB2P26583 209 aaKnown RBP10.73□□□□□ -0.69
SYNE1-211ENST00000413186 KIF16BQ96L93 1317 aa10.73□□□□□ -0.69
SYNE1-211ENST00000413186 NEXNQ0ZGT2 675 aa10.73□□□□□ -0.69
SYNE1-211ENST00000413186 SLC4A10Q6U841 1118 aa10.73□□□□□ -0.69
SYNE1-211ENST00000413186 SLAIN2Q9P270 581 aa10.73□□□□□ -0.69
SYNE1-211ENST00000413186 CASC1Q6TDU7 716 aa10.73□□□□□ -0.69
SYNE1-211ENST00000413186 TMEM94Q12767 1356 aa10.72□□□□□ -0.69
SYNE1-211ENST00000413186 CT47B1P0C2W7 299 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-211ENST00000413186 PHF23Q9BUL5 403 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-211ENST00000413186 EIF2S2P20042 333 aaKnown RBP10.72□□□□□ -0.69
SYNE1-211ENST00000413186 NGLY1Q96IV0 654 aa10.72□□□□□ -0.69
SYNE1-211ENST00000413186 ADAMTS2O95450 1211 aa10.71□□□□□ -0.69
SYNE1-211ENST00000413186 CLUAP1Q96AJ1 413 aa10.71□□□□□ -0.69
SYNE1-211ENST00000413186 PARD3Q8TEW0 1356 aa10.71□□□□□ -0.7
SYNE1-211ENST00000413186 REREQ9P2R6 1566 aa10.71□□□□□ -0.7
SYNE1-211ENST00000413186 TMPOP42166 694 aaKnown RBP10.71□□□□□ -0.7
SYNE1-211ENST00000413186 CARD14Q9BXL6 1004 aa10.71□□□□□ -0.7
SYNE1-211ENST00000413186 CABP4P57796 275 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 PLEKHH1Q9ULM0 1364 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 RICTORQ6R327 1708 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 FLT4P35916 1363 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 GNAT3A8MTJ3 354 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 ARHGEF10O15013 1369 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 DDX54Q8TDD1 881 aaKnown RBP10.7□□□□□ -0.7
SYNE1-211ENST00000413186 ORAI2Q96SN7 254 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 PER1O15534 1290 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-211ENST00000413186 PTPRMP28827 1452 aa10.7□□□□□ -0.7
SYNE1-211ENST00000413186 GTF2E1P29083 439 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-211ENST00000413186 CFAP44Q96MT7 982 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 ROBO2Q9HCK4 1378 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 CCDC30Q5VVM6 783 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 ANKRD24Q8TF21 1146 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 ZNF428Q96B54 188 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 POLR3AO14802 1390 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-211ENST00000413186 GCP02774 474 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 RRP1P56182 461 aaKnown RBP10.69□□□□□ -0.7
SYNE1-211ENST00000413186 CCDC184Q52MB2 194 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 BCL2L13Q9BXK5 485 aa10.69□□□□□ -0.7
SYNE1-211ENST00000413186 SETD1BQ9UPS6 1966 aaKnown RBP10.68□□□□□ -0.7
SYNE1-211ENST00000413186 FRMPD1Q5SYB0 1578 aa10.68□□□□□ -0.7
SYNE1-211ENST00000413186 FKBP5Q13451 457 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-211ENST00000413186 TMX4Q9H1E5 349 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-211ENST00000413186 POLKQ9UBT6 870 aa10.68□□□□□ -0.7
SYNE1-211ENST00000413186 KDM5AP29375 1690 aaKnown RBP10.68□□□□□ -0.7
SYNE1-211ENST00000413186 AAMPQ13685 434 aa10.68□□□□□ -0.7
SYNE1-211ENST00000413186 B4GALNT3Q6L9W6 998 aa10.68□□□□□ -0.7
SYNE1-211ENST00000413186 DDX19BQ9UMR2 479 aa10.68□□□□□ -0.7
SYNE1-211ENST00000413186 HSP90AA1P07900 732 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms