RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CDC42BPGQ6DT37 1551 aa26.3■■□□□ 1.8
USP39-204ENST00000409766 WDR63Q8IWG1 891 aa26.29■■□□□ 1.8
USP39-204ENST00000409766 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.29■■□□□ 1.8
USP39-204ENST00000409766 CCDC61Q9Y6R9 512 aa26.29■■□□□ 1.8
USP39-204ENST00000409766 MON2Q7Z3U7 1717 aa26.28■■□□□ 1.8
USP39-204ENST00000409766 EID1Q9Y6B2 187 aa26.27■■□□□ 1.8
USP39-204ENST00000409766 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.27■■□□□ 1.8
USP39-204ENST00000409766 PLEKHF1Q96S99 279 aa26.26■■□□□ 1.79
USP39-204ENST00000409766 AKAP12Q02952 1782 aa26.26■■□□□ 1.79
USP39-204ENST00000409766 U2SURPO15042 1029 aaKnown RBP26.25■■□□□ 1.79
USP39-204ENST00000409766 NCKAP5LQ9HCH0 1330 aa26.25■■□□□ 1.79
USP39-204ENST00000409766 PTPRUQ92729 1446 aa26.24■■□□□ 1.79
USP39-204ENST00000409766 MAP2P11137 1827 aaKnown RBP26.23■■□□□ 1.79
USP39-204ENST00000409766 PRR36Q9H6K5 1346 aa26.23■■□□□ 1.79
USP39-204ENST00000409766 ITSN1Q15811 1721 aa26.23■■□□□ 1.79
USP39-204ENST00000409766 DIAPH1O60610 1272 aaKnown RBP26.23■■□□□ 1.79
USP39-204ENST00000409766 PLPPR3Q6T4P5 718 aa26.23■■□□□ 1.79
USP39-204ENST00000409766 BCAR3O75815 825 aa26.22■■□□□ 1.79
USP39-204ENST00000409766 SLC26A8Q96RN1 970 aa26.22■■□□□ 1.79
USP39-204ENST00000409766 POLKQ9UBT6 870 aa26.22■■□□□ 1.79
USP39-204ENST00000409766 THEMISQ8N1K5 641 aaPredicted RBP26.21■■□□□ 1.79
USP39-204ENST00000409766 RIMS1Q86UR5 1692 aaKnown RBP26.2■■□□□ 1.79
USP39-204ENST00000409766 NME9Q86XW9 330 aa26.2■■□□□ 1.78
USP39-204ENST00000409766 TBX22Q9Y458 520 aa26.19■■□□□ 1.78
USP39-204ENST00000409766 ZNF692Q9BU19 519 aaPredicted RBP26.19■■□□□ 1.78
USP39-204ENST00000409766 TOPAZ1Q8N9V7 1692 aa26.18■■□□□ 1.78
USP39-204ENST00000409766 FBLN1P23142 703 aa26.18■■□□□ 1.78
USP39-204ENST00000409766 ADAMTSL3P82987 1691 aa26.18■■□□□ 1.78
USP39-204ENST00000409766 FANCIQ9NVI1 1328 aa26.17■■□□□ 1.78
USP39-204ENST00000409766 TMPOP42166 694 aaKnown RBP26.17■■□□□ 1.78
USP39-204ENST00000409766 AATKQ6ZMQ8 1374 aa26.16■■□□□ 1.78
USP39-204ENST00000409766 DIP2AQ14689 1571 aa26.16■■□□□ 1.78
USP39-204ENST00000409766 MAPK8IP3Q9UPT6 1336 aa26.16■■□□□ 1.78
USP39-204ENST00000409766 PNNQ9H307 717 aaKnown RBP26.15■■□□□ 1.78
USP39-204ENST00000409766 ZRANB1Q9UGI0 708 aa26.15■■□□□ 1.78
USP39-204ENST00000409766 AMOTL2Q9Y2J4 779 aa26.15■■□□□ 1.78
USP39-204ENST00000409766 MYH16Q9H6N6 1097 aa26.14■■□□□ 1.78
USP39-204ENST00000409766 PTCH1Q13635 1447 aa26.13■■□□□ 1.77
USP39-204ENST00000409766 PPM1GO15355 546 aaPredicted RBP26.13■■□□□ 1.77
USP39-204ENST00000409766 FCHSD2O94868 740 aa26.13■■□□□ 1.77
USP39-204ENST00000409766 TRIM35Q9UPQ4 493 aa26.13■■□□□ 1.77
USP39-204ENST00000409766 COG3Q96JB2 828 aa26.12■■□□□ 1.77
USP39-204ENST00000409766 NRKQ7Z2Y5 1582 aa26.12■■□□□ 1.77
USP39-204ENST00000409766 CDK12Q9NYV4 1490 aaPredicted RBP26.12■■□□□ 1.77
USP39-204ENST00000409766 PLEKHG3A1L390 1219 aa26.12■■□□□ 1.77
USP39-204ENST00000409766 RARSP54136 660 aaKnown RBP26.12■■□□□ 1.77
USP39-204ENST00000409766 LRRC7Q96NW7 1537 aa26.12■■□□□ 1.77
USP39-204ENST00000409766 EMILIN1Q9Y6C2 1016 aa26.11■■□□□ 1.77
USP39-204ENST00000409766 PDE3AQ14432 1141 aa26.1■■□□□ 1.77
USP39-204ENST00000409766 KDM2BQ8NHM5 1336 aa26.1■■□□□ 1.77
USP39-204ENST00000409766 CEP170BQ9Y4F5 1589 aaPredicted RBP26.1■■□□□ 1.77
USP39-204ENST00000409766 ACEP12821 1306 aa26.09■■□□□ 1.77
USP39-204ENST00000409766 TCERG1O14776 1098 aaKnown RBP26.09■■□□□ 1.77
USP39-204ENST00000409766 RSPH6AQ9H0K4 717 aa26.09■■□□□ 1.77
USP39-204ENST00000409766 XRN1Q8IZH2 1706 aaKnown RBP26.08■■□□□ 1.76
USP39-204ENST00000409766 RIPK4P57078 832 aa26.07■■□□□ 1.76
USP39-204ENST00000409766 IL13P35225 146 aa26.06■■□□□ 1.76
USP39-204ENST00000409766 IL16Q14005 1332 aa26.06■■□□□ 1.76
USP39-204ENST00000409766 TTC21BQ7Z4L5 1316 aa26.06■■□□□ 1.76
USP39-204ENST00000409766 USP6P35125 1406 aa26.05■■□□□ 1.76
USP39-204ENST00000409766 NUTM2FA1L443 756 aa26.05■■□□□ 1.76
USP39-204ENST00000409766 PRKAR2BP31323 418 aa26.04■■□□□ 1.76
USP39-204ENST00000409766 CENPQQ7L2Z9 268 aaPredicted RBP26.04■■□□□ 1.76
USP39-204ENST00000409766 CT47B1P0C2W7 299 aaPredicted RBP26.02■■□□□ 1.76
USP39-204ENST00000409766 CANXP27824 592 aaKnown RBP26.02■■□□□ 1.76
USP39-204ENST00000409766 RRS1Q15050 365 aaKnown RBP26.02■■□□□ 1.76
USP39-204ENST00000409766 TSR2Q969E8 191 aaKnown RBP26.02■■□□□ 1.76
USP39-204ENST00000409766 OVOS2A0A0J9YW53 1432 aa26.01■■□□□ 1.75
USP39-204ENST00000409766 MS4A1P11836 297 aa26.01■■□□□ 1.75
USP39-204ENST00000409766 OVOS2Q6IE36 1432 aa26.01■■□□□ 1.75
USP39-204ENST00000409766 SSH2Q76I76 1423 aa26.01■■□□□ 1.75
USP39-204ENST00000409766 FRAT1Q92837 279 aaPredicted RBP26■■□□□ 1.75
USP39-204ENST00000409766 PIK3R4Q99570 1358 aa26■■□□□ 1.75
USP39-204ENST00000409766 NALCNQ8IZF0 1738 aa26■■□□□ 1.75
USP39-204ENST00000409766 RGPD8O14715 1765 aaPredicted RBP25.99■■□□□ 1.75
USP39-204ENST00000409766 HMOX1P09601 288 aa25.99■■□□□ 1.75
USP39-204ENST00000409766 PANK1Q8TE04 598 aa25.99■■□□□ 1.75
USP39-204ENST00000409766 ZNF142P52746 1687 aaPredicted RBP25.99■■□□□ 1.75
USP39-204ENST00000409766 NEFMP07197 916 aa25.98■■□□□ 1.75
USP39-204ENST00000409766 MSH5O43196 834 aa25.98■■□□□ 1.75
USP39-204ENST00000409766 PHACTR3Q96KR7 559 aa25.98■■□□□ 1.75
USP39-204ENST00000409766 EXOSC9Q06265 439 aaKnown RBP25.97■■□□□ 1.75
USP39-204ENST00000409766 BCL2L13Q9BXK5 485 aa25.97■■□□□ 1.75
USP39-204ENST00000409766 NFE2L2Q16236 605 aa25.96■■□□□ 1.75
USP39-204ENST00000409766 COG6Q9Y2V7 657 aa25.96■■□□□ 1.75
USP39-204ENST00000409766 KCNA6P17658 529 aa25.95■■□□□ 1.75
USP39-204ENST00000409766 SETD1BQ9UPS6 1966 aaKnown RBP25.94■■□□□ 1.74
USP39-204ENST00000409766 SKAP1Q86WV1 359 aa25.94■■□□□ 1.74
USP39-204ENST00000409766 USP31Q70CQ4 1352 aa25.94■■□□□ 1.74
USP39-204ENST00000409766 TTC21AQ8NDW8 1320 aa25.93■■□□□ 1.74
USP39-204ENST00000409766 PMFBP1Q8TBY8 1022 aa25.93■■□□□ 1.74
USP39-204ENST00000409766 RLBP1P12271 317 aa25.92■■□□□ 1.74
USP39-204ENST00000409766 CLUAP1Q96AJ1 413 aa25.92■■□□□ 1.74
USP39-204ENST00000409766 ANKARQ7Z5J8 1434 aa25.91■■□□□ 1.74
USP39-204ENST00000409766 PDE4AP27815 886 aa25.91■■□□□ 1.74
USP39-204ENST00000409766 TNNQ9UQP3 1299 aa25.91■■□□□ 1.74
USP39-204ENST00000409766 AAMPQ13685 434 aa25.9■■□□□ 1.74
USP39-204ENST00000409766 ANKLE2Q86XL3 938 aa25.9■■□□□ 1.74
USP39-204ENST00000409766 CHD2O14647 1828 aaKnown RBP25.9■■□□□ 1.74
USP39-204ENST00000409766 PEAK1Q9H792 1746 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms