RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 USP6P35125 1406 aa16.7■□□□□ 0.26
CHMP3-204ENST00000409727 MTHFSP49914 203 aa16.7■□□□□ 0.26
CHMP3-204ENST00000409727 ANKRD26Q9UPS8 1709 aa16.7■□□□□ 0.26
CHMP3-204ENST00000409727 TTC21BQ7Z4L5 1316 aa16.69■□□□□ 0.26
CHMP3-204ENST00000409727 FBLN1P23142 703 aa16.69■□□□□ 0.26
CHMP3-204ENST00000409727 WDR43Q15061 677 aaKnown RBP eCLIP16.69■□□□□ 0.26
CHMP3-204ENST00000409727 C19orf44Q9H6X5 657 aa16.69■□□□□ 0.26
CHMP3-204ENST00000409727 PHF8Q9UPP1 1060 aa16.69■□□□□ 0.26
CHMP3-204ENST00000409727 POLR3AO14802 1390 aaPredicted RBP16.68■□□□□ 0.26
CHMP3-204ENST00000409727 COG3Q96JB2 828 aa16.67■□□□□ 0.26
CHMP3-204ENST00000409727 NRKQ7Z2Y5 1582 aa16.67■□□□□ 0.26
CHMP3-204ENST00000409727 ORAI2Q96SN7 254 aa16.67■□□□□ 0.26
CHMP3-204ENST00000409727 ADAMTS8Q9UP79 889 aa16.67■□□□□ 0.26
CHMP3-204ENST00000409727 ATF3P18847 181 aa16.66■□□□□ 0.26
CHMP3-204ENST00000409727 PPM1GO15355 546 aaPredicted RBP16.65■□□□□ 0.26
CHMP3-204ENST00000409727 PAK3O75914 559 aaPredicted RBP16.65■□□□□ 0.26
CHMP3-204ENST00000409727 CFAP53Q96M91 514 aa16.65■□□□□ 0.26
CHMP3-204ENST00000409727 SSH2Q76I76 1423 aa16.63■□□□□ 0.25
CHMP3-204ENST00000409727 SOX12O15370 315 aa16.63■□□□□ 0.25
CHMP3-204ENST00000409727 SALL2Q9Y467 1007 aaPredicted RBP16.63■□□□□ 0.25
CHMP3-204ENST00000409727 XPCQ01831 940 aaPredicted RBP16.63■□□□□ 0.25
CHMP3-204ENST00000409727 PSME1Q06323 249 aa16.63■□□□□ 0.25
CHMP3-204ENST00000409727 NUTM2GQ5VZR2 741 aa16.63■□□□□ 0.25
CHMP3-204ENST00000409727 DMRT2Q9Y5R5 561 aa16.63■□□□□ 0.25
CHMP3-204ENST00000409727 MSH6P52701 1360 aa16.62■□□□□ 0.25
CHMP3-204ENST00000409727 FOXO3O43524 673 aa16.62■□□□□ 0.25
CHMP3-204ENST00000409727 TTC21AQ8NDW8 1320 aa16.61■□□□□ 0.25
CHMP3-204ENST00000409727 LRRC7Q96NW7 1537 aa16.61■□□□□ 0.25
CHMP3-204ENST00000409727 C1orf167Q5SNV9 1468 aa16.61■□□□□ 0.25
CHMP3-204ENST00000409727 ZBED9Q6R2W3 1325 aa16.61■□□□□ 0.25
CHMP3-204ENST00000409727 RRS1Q15050 365 aaKnown RBP16.61■□□□□ 0.25
CHMP3-204ENST00000409727 CCDC146Q8IYE0 955 aa16.61■□□□□ 0.25
CHMP3-204ENST00000409727 POLKQ9UBT6 870 aa16.61■□□□□ 0.25
CHMP3-204ENST00000409727 NCOA3Q9Y6Q9 1424 aa16.6■□□□□ 0.25
CHMP3-204ENST00000409727 EMILIN1Q9Y6C2 1016 aa16.6■□□□□ 0.25
CHMP3-204ENST00000409727 XIRP1Q702N8 1843 aaKnown RBP16.59■□□□□ 0.25
CHMP3-204ENST00000409727 CADPS2Q86UW7 1296 aa16.59■□□□□ 0.25
CHMP3-204ENST00000409727 ABTB2Q8N961 1025 aa16.59■□□□□ 0.25
CHMP3-204ENST00000409727 BLMP54132 1417 aaPredicted RBP16.59■□□□□ 0.25
CHMP3-204ENST00000409727 MST1RQ04912 1400 aa16.59■□□□□ 0.25
CHMP3-204ENST00000409727 OVOS2A0A0J9YW53 1432 aa16.59■□□□□ 0.25
CHMP3-204ENST00000409727 OVOS2Q6IE36 1432 aa16.59■□□□□ 0.25
CHMP3-204ENST00000409727 NLRP6P59044 892 aa16.59■□□□□ 0.25
CHMP3-204ENST00000409727 SHPRHQ149N8 1683 aa16.58■□□□□ 0.25
CHMP3-204ENST00000409727 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
CHMP3-204ENST00000409727 DCCP43146 1447 aa16.58■□□□□ 0.24
CHMP3-204ENST00000409727 PIK3C2AO00443 1686 aa16.58■□□□□ 0.24
CHMP3-204ENST00000409727 MAP2P11137 1827 aaKnown RBP16.57■□□□□ 0.24
CHMP3-204ENST00000409727 U2SURPO15042 1029 aaKnown RBP16.56■□□□□ 0.24
CHMP3-204ENST00000409727 PLEKHG5O94827 1062 aa16.56■□□□□ 0.24
CHMP3-204ENST00000409727 PPP4R3CPQ6ZMV5 832 aa16.56■□□□□ 0.24
CHMP3-204ENST00000409727 U2AF1L5P0DN76 240 aaPredicted RBP16.56■□□□□ 0.24
CHMP3-204ENST00000409727 U2AF1Q01081 240 aaKnown RBP eCLIP16.56■□□□□ 0.24
CHMP3-204ENST00000409727 DDX17Q92841 729 aaKnown RBP16.56■□□□□ 0.24
CHMP3-204ENST00000409727 AATKQ6ZMQ8 1374 aa16.55■□□□□ 0.24
CHMP3-204ENST00000409727 LMOD2Q6P5Q4 547 aa16.55■□□□□ 0.24
CHMP3-204ENST00000409727 COL3A1P02461 1466 aaPredicted RBP16.55■□□□□ 0.24
CHMP3-204ENST00000409727 DIAPH1O60610 1272 aaKnown RBP16.54■□□□□ 0.24
CHMP3-204ENST00000409727 INSRP06213 1382 aa16.54■□□□□ 0.24
CHMP3-204ENST00000409727 NUDCQ9Y266 331 aa16.54■□□□□ 0.24
CHMP3-204ENST00000409727 KIF1AQ12756 1690 aa16.53■□□□□ 0.24
CHMP3-204ENST00000409727 KRT28Q7Z3Y7 464 aa16.53■□□□□ 0.24
CHMP3-204ENST00000409727 USP31Q70CQ4 1352 aa16.53■□□□□ 0.24
CHMP3-204ENST00000409727 PNPLA6Q8IY17 1366 aa16.52■□□□□ 0.24
CHMP3-204ENST00000409727 APAF1O14727 1248 aa16.51■□□□□ 0.23
CHMP3-204ENST00000409727 SMG6Q86US8 1419 aaKnown RBP16.51■□□□□ 0.23
CHMP3-204ENST00000409727 CDK12Q9NYV4 1490 aaPredicted RBP16.51■□□□□ 0.23
CHMP3-204ENST00000409727 SLAIN2Q9P270 581 aa16.5■□□□□ 0.23
CHMP3-204ENST00000409727 MAP3K19Q56UN5 1328 aa16.5■□□□□ 0.23
CHMP3-204ENST00000409727 MARF1Q9Y4F3 1742 aaKnown RBP16.49■□□□□ 0.23
CHMP3-204ENST00000409727 BRINP3Q76B58 766 aa16.48■□□□□ 0.23
CHMP3-204ENST00000409727 NEUROD2Q15784 382 aa16.48■□□□□ 0.23
CHMP3-204ENST00000409727 HSP90AB2PQ58FF8 381 aa16.48■□□□□ 0.23
CHMP3-204ENST00000409727 RUNDC1Q96C34 613 aa16.48■□□□□ 0.23
CHMP3-204ENST00000409727 GTF3C3Q9Y5Q9 886 aa16.48■□□□□ 0.23
CHMP3-204ENST00000409727 PEAK1Q9H792 1746 aa16.48■□□□□ 0.23
CHMP3-204ENST00000409727 NPHP3Q7Z494 1330 aa16.47■□□□□ 0.23
CHMP3-204ENST00000409727 ZBTB7CA1YPR0 619 aa16.47■□□□□ 0.23
CHMP3-204ENST00000409727 IL13P35225 146 aa16.47■□□□□ 0.23
CHMP3-204ENST00000409727 AMPHP49418 695 aa16.47■□□□□ 0.23
CHMP3-204ENST00000409727 RRP7AQ9Y3A4 280 aaKnown RBP16.47■□□□□ 0.23
CHMP3-204ENST00000409727 TRPM3Q9HCF6 1732 aaPredicted RBP16.47■□□□□ 0.23
CHMP3-204ENST00000409727 HMOX1P09601 288 aa16.46■□□□□ 0.23
CHMP3-204ENST00000409727 USP54Q70EL1 1684 aa16.45■□□□□ 0.22
CHMP3-204ENST00000409727 MAPK8IP2Q13387 824 aaPredicted RBP16.45■□□□□ 0.22
CHMP3-204ENST00000409727 TCP11L2Q8N4U5 519 aa16.45■□□□□ 0.22
CHMP3-204ENST00000409727 CDCA7LQ96GN5 454 aa16.45■□□□□ 0.22
CHMP3-204ENST00000409727 EIF4A2Q14240 407 aaKnown RBP16.44■□□□□ 0.22
CHMP3-204ENST00000409727 SBNO1A3KN83 1393 aa16.44■□□□□ 0.22
CHMP3-204ENST00000409727 FLT4P35916 1363 aa16.43■□□□□ 0.22
CHMP3-204ENST00000409727 MAPK8IP3Q9UPT6 1336 aa16.42■□□□□ 0.22
CHMP3-204ENST00000409727 PLEKHF1Q96S99 279 aa16.42■□□□□ 0.22
CHMP3-204ENST00000409727 PXDNQ92626 1479 aa16.42■□□□□ 0.22
CHMP3-204ENST00000409727 LTBP4Q8N2S1 1624 aa16.42■□□□□ 0.22
CHMP3-204ENST00000409727 GCP02774 474 aa16.42■□□□□ 0.22
CHMP3-204ENST00000409727 PRKAR2BP31323 418 aa16.42■□□□□ 0.22
CHMP3-204ENST00000409727 KCNH5Q8NCM2 988 aa16.42■□□□□ 0.22
CHMP3-204ENST00000409727 IQSEC2Q5JU85 1478 aa16.41■□□□□ 0.22
CHMP3-204ENST00000409727 HOXC9P31274 260 aa16.41■□□□□ 0.22
CHMP3-204ENST00000409727 LTV1Q96GA3 475 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms