RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 CCDC148Q8NFR7 591 aa9.33□□□□□ -0.92
SYNE1-210ENST00000409694 MSH5O43196 834 aa9.33□□□□□ -0.92
SYNE1-210ENST00000409694 CENPHQ9H3R5 247 aa9.33□□□□□ -0.92
SYNE1-210ENST00000409694 CDC45O75419 566 aa9.33□□□□□ -0.92
SYNE1-210ENST00000409694 AEBP1Q8IUX7 1158 aa9.33□□□□□ -0.92
SYNE1-210ENST00000409694 ZNF397Q8NF99 534 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-210ENST00000409694 SERPINC1P01008 464 aa9.32□□□□□ -0.92
SYNE1-210ENST00000409694 GGT6Q6P531 493 aa9.32□□□□□ -0.92
SYNE1-210ENST00000409694 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNE1-210ENST00000409694 PPP1R12BO60237 982 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-210ENST00000409694 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-210ENST00000409694 ANAPC15P60006 121 aa9.31□□□□□ -0.92
SYNE1-210ENST00000409694 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.31□□□□□ -0.92
SYNE1-210ENST00000409694 V9GYY5 206 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-210ENST00000409694 C22orf23Q9BZE7 217 aa9.31□□□□□ -0.92
SYNE1-210ENST00000409694 CDKL5O76039 1030 aa9.31□□□□□ -0.92
SYNE1-210ENST00000409694 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.31□□□□□ -0.92
SYNE1-210ENST00000409694 GNL3LQ9NVN8 582 aaKnown RBP9.31□□□□□ -0.92
SYNE1-210ENST00000409694 TAF4BQ92750 862 aa9.31□□□□□ -0.92
SYNE1-210ENST00000409694 SMG6Q86US8 1419 aaKnown RBP9.3□□□□□ -0.92
SYNE1-210ENST00000409694 TRIM22Q8IYM9 498 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 RRBP1Q9P2E9 1410 aaKnown RBP9.3□□□□□ -0.92
SYNE1-210ENST00000409694 SMC1AQ14683 1233 aaKnown RBP9.3□□□□□ -0.92
SYNE1-210ENST00000409694 IMMTQ16891 758 aaKnown RBP9.3□□□□□ -0.92
SYNE1-210ENST00000409694 CCDC27Q2M243 656 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 EPB41L2O43491 1005 aaKnown RBP9.3□□□□□ -0.92
SYNE1-210ENST00000409694 LUZP1Q86V48 1076 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 MPHOSPH9Q99550 1183 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 DDX12PQ92771 950 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 RRP9O43818 475 aaKnown RBP9.3□□□□□ -0.92
SYNE1-210ENST00000409694 CCDC57Q2TAC2 916 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 SCAPERQ9BY12 1400 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 WASHC4Q2M389 1173 aa9.3□□□□□ -0.92
SYNE1-210ENST00000409694 LTV1Q96GA3 475 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-210ENST00000409694 RAB3GAP2Q9H2M9 1393 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 CUX2O14529 1486 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 CRACR2AQ9BSW2 395 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 BMP2KQ9NSY1 1161 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-210ENST00000409694 NOL7Q9UMY1 257 aaKnown RBP9.29□□□□□ -0.92
SYNE1-210ENST00000409694 CCDC175P0C221 793 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 BRPF1P55201 1214 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-210ENST00000409694 C6orf163Q5TEZ5 329 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 TMCO3Q6UWJ1 677 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 CFAP45Q9UL16 551 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 EFCAB2Q5VUJ9 269 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 CARMIL1Q5VZK9 1371 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 STK38Q15208 465 aa9.29□□□□□ -0.92
SYNE1-210ENST00000409694 SMTNL1A8MU46 457 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 SREK1Q8WXA9 508 aaKnown RBP9.28□□□□□ -0.92
SYNE1-210ENST00000409694 HMGB2P26583 209 aaKnown RBP9.28□□□□□ -0.92
SYNE1-210ENST00000409694 TANGO6Q9C0B7 1094 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 CCDC102AQ96A19 550 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 TAOK3Q9H2K8 898 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 VPS36Q86VN1 386 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 FERP16591 822 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 KIAA1328Q86T90 577 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 GNAI1P63096 354 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 CUX1P39880 1505 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 FOSBP53539 338 aa9.28□□□□□ -0.92
SYNE1-210ENST00000409694 FKBP5Q13451 457 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-210ENST00000409694 CCDC150Q8NCX0 1101 aa9.27□□□□□ -0.92
SYNE1-210ENST00000409694 BCCIPQ9P287 314 aaKnown RBP eCLIP9.27□□□□□ -0.92
SYNE1-210ENST00000409694 MYO15BQ96JP2 1530 aa9.27□□□□□ -0.92
SYNE1-210ENST00000409694 POTEB2H3BUK9 544 aa9.27□□□□□ -0.92
SYNE1-210ENST00000409694 TNMDQ9H2S6 317 aa9.27□□□□□ -0.92
SYNE1-210ENST00000409694 ZWINTO95229 277 aa9.27□□□□□ -0.93
SYNE1-210ENST00000409694 HMGB1P1B2RPK0 211 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-210ENST00000409694 KIF6Q6ZMV9 814 aa9.27□□□□□ -0.93
SYNE1-210ENST00000409694 LRRFIP2Q9Y608 721 aaKnown RBP9.27□□□□□ -0.93
SYNE1-210ENST00000409694 WASHC2CQ9Y4E1 1318 aa9.27□□□□□ -0.93
SYNE1-210ENST00000409694 HOMER2Q9NSB8 354 aa9.27□□□□□ -0.93
SYNE1-210ENST00000409694 CEP131Q9UPN4 1083 aa9.27□□□□□ -0.93
SYNE1-210ENST00000409694 NACAP1Q9BZK3 213 aa9.27□□□□□ -0.93
SYNE1-210ENST00000409694 HMGB1P09429 215 aaKnown RBP9.26□□□□□ -0.93
SYNE1-210ENST00000409694 FAM193AP78312 1265 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 WASF1Q92558 559 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 CRBNQ96SW2 442 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 SMARCA2P51531 1590 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 CALCOCO1Q9P1Z2 691 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 SPECC1LQ69YQ0 1117 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 EIF2S2P20042 333 aaKnown RBP9.26□□□□□ -0.93
SYNE1-210ENST00000409694 UBTFL1P0CB47 393 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-210ENST00000409694 FERMT1Q9BQL6 677 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 FSD1Q9BTV5 496 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 PABPN1LA6NDY0 278 aaKnown RBP9.26□□□□□ -0.93
SYNE1-210ENST00000409694 ZSCAN25Q6NSZ9 544 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 MATR3P43243 847 aaKnown RBP eCLIP9.26□□□□□ -0.93
SYNE1-210ENST00000409694 HOOK3Q86VS8 718 aa9.26□□□□□ -0.93
SYNE1-210ENST00000409694 WDR33Q9C0J8 1336 aaKnown RBP9.26□□□□□ -0.93
SYNE1-210ENST00000409694 FYB1O15117 783 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 ZSCAN12O43309 604 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 CEP57L1Q8IYX8 460 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 FGFR1OPO95684 399 aaKnown RBP9.25□□□□□ -0.93
SYNE1-210ENST00000409694 DAAM2Q86T65 1068 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 SAMD1Q6SPF0 538 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-210ENST00000409694 CCDC69A6NI79 296 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 TNIP1Q15025 636 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 PPP4R3AQ6IN85 833 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 UQCRHLA0A096LP55 91 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 TRAK2O60296 914 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms