RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 DPY19L2Q6NUT2 758 aa9.02□□□□□ -0.97
SCN9A-202ENST00000409435 ZSCAN29Q8IWY8 852 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-202ENST00000409435 HFM1A2PYH4 1435 aa9.02□□□□□ -0.97
SCN9A-202ENST00000409435 CEP170Q5SW79 1584 aa9.02□□□□□ -0.97
SCN9A-202ENST00000409435 MYCNP04198 464 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-202ENST00000409435 KIAA2012Q0VF49 1180 aa9.02□□□□□ -0.97
SCN9A-202ENST00000409435 PNISRQ8TF01 805 aaKnown RBP9.02□□□□□ -0.97
SCN9A-202ENST00000409435 BIN2Q9UBW5 565 aaPredicted RBP9.01□□□□□ -0.97
SCN9A-202ENST00000409435 PTCD1O75127 700 aaKnown RBP9.01□□□□□ -0.97
SCN9A-202ENST00000409435 HMOX1P09601 288 aa9.01□□□□□ -0.97
SCN9A-202ENST00000409435 NOC3LQ8WTT2 800 aaKnown RBP9.01□□□□□ -0.97
SCN9A-202ENST00000409435 SLC4A3P48751 1232 aa9.01□□□□□ -0.97
SCN9A-202ENST00000409435 RIMS2Q9UQ26 1411 aa9.01□□□□□ -0.97
SCN9A-202ENST00000409435 PRKCSHP14314 528 aaPredicted RBP9.01□□□□□ -0.97
SCN9A-202ENST00000409435 ZNF526Q8TF50 670 aaPredicted RBP9.01□□□□□ -0.97
SCN9A-202ENST00000409435 KRT27Q7Z3Y8 459 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 MPHOSPH8Q99549 860 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 TRAPPC8Q9Y2L5 1435 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 MYO1BO43795 1136 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 RALBP1Q15311 655 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 CNNM1Q9NRU3 951 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 CCDC87Q9NVE4 849 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 RTCBQ9Y3I0 505 aaKnown RBP9□□□□□ -0.97
SCN9A-202ENST00000409435 GOLGA6L3A6NEY3 463 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 CABLES1Q8TDN4 633 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 PANK3Q9H999 370 aa9□□□□□ -0.97
SCN9A-202ENST00000409435 ZNF335Q9H4Z2 1342 aaPredicted RBP9□□□□□ -0.97
SCN9A-202ENST00000409435 ATP6V1AP38606 617 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 ATAD2Q6PL18 1390 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 RBM6P78332 1123 aaKnown RBP8.99□□□□□ -0.97
SCN9A-202ENST00000409435 ANKIB1Q9P2G1 1089 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 YEATS2Q9ULM3 1422 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 NEO1Q92859 1461 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 FAM196AQ6ZSG2 479 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 ADAMTS12P58397 1594 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 FYB1O15117 783 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 ARHGAP27Q6ZUM4 889 aa8.99□□□□□ -0.97
SCN9A-202ENST00000409435 WASLO00401 505 aaPredicted RBP8.98□□□□□ -0.97
SCN9A-202ENST00000409435 FLAD1Q8NFF5 587 aa8.98□□□□□ -0.97
SCN9A-202ENST00000409435 TEX13AQ9BXU3 409 aaPredicted RBP8.98□□□□□ -0.97
SCN9A-202ENST00000409435 MCCP23508 829 aa8.98□□□□□ -0.97
SCN9A-202ENST00000409435 IGHMBP2P38935 993 aaKnown RBP8.98□□□□□ -0.97
SCN9A-202ENST00000409435 STK11IPQ8N1F8 1099 aa8.98□□□□□ -0.97
SCN9A-202ENST00000409435 RPRD2Q5VT52 1461 aaKnown RBP8.98□□□□□ -0.97
SCN9A-202ENST00000409435 ELL2O00472 640 aaPredicted RBP8.98□□□□□ -0.97
SCN9A-202ENST00000409435 ZCRB1Q8TBF4 217 aaKnown RBP8.98□□□□□ -0.97
SCN9A-202ENST00000409435 TBX22Q9Y458 520 aa8.98□□□□□ -0.97
SCN9A-202ENST00000409435 AMOTQ4VCS5 1084 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 TMEM87AQ8NBN3 555 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 CCNL1Q9UK58 526 aaPredicted RBP8.97□□□□□ -0.97
SCN9A-202ENST00000409435 C6orf229H3BNL8 230 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 KDM5BQ9UGL1 1544 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 IL2RBP14784 551 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 HSPA1LP34931 641 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 WWC2Q6AWC2 1192 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 HDAC9Q9UKV0 1011 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 BCS1LQ9Y276 419 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 ATP10BO94823 1461 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 NUP160Q12769 1436 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 EAPPQ56P03 285 aaPredicted RBP8.97□□□□□ -0.97
SCN9A-202ENST00000409435 ZNF408Q9H9D4 720 aa8.97□□□□□ -0.97
SCN9A-202ENST00000409435 FKBP5Q13451 457 aaPredicted RBP8.96□□□□□ -0.97
SCN9A-202ENST00000409435 TRAPPC3LQ5T215 181 aa8.96□□□□□ -0.97
SCN9A-202ENST00000409435 ITPRIPQ8IWB1 547 aa8.96□□□□□ -0.97
SCN9A-202ENST00000409435 TCP11L2Q8N4U5 519 aa8.96□□□□□ -0.97
SCN9A-202ENST00000409435 EIF6P56537 245 aaKnown RBP8.96□□□□□ -0.97
SCN9A-202ENST00000409435 CCDC43Q96MW1 224 aaKnown RBP8.96□□□□□ -0.97
SCN9A-202ENST00000409435 USP47Q96K76 1375 aa8.96□□□□□ -0.97
SCN9A-202ENST00000409435 SPDYE4A6NLX3 237 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 NPHP4O75161 1426 aaPredicted RBP8.96□□□□□ -0.98
SCN9A-202ENST00000409435 FCHSD2O94868 740 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 DAPK1P53355 1430 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 WDR78Q5VTH9 848 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 ZNF771Q7L3S4 317 aaPredicted RBP8.96□□□□□ -0.98
SCN9A-202ENST00000409435 DRC7Q8IY82 874 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 ANKRD24Q8TF21 1146 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 GJA3Q9Y6H8 435 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 G3BP1Q13283 466 aaKnown RBP eCLIP8.96□□□□□ -0.98
SCN9A-202ENST00000409435 NBPF6Q5VWK0 638 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 NBPF5PQ86XG9 351 aaPredicted RBP8.96□□□□□ -0.98
SCN9A-202ENST00000409435 NBPF4Q96M43 638 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 LRRC9Q6ZRR7 1453 aa8.96□□□□□ -0.98
SCN9A-202ENST00000409435 BTBD11A6QL63 1104 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 SETDB2Q96T68 719 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 WDR97A6NE52 1622 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 CCDC146Q8IYE0 955 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 CFAP74Q9C0B2 1584 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 ARHGEF10O15013 1369 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 MYL6BP14649 208 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 HSP90AB3PQ58FF7 597 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 IFNL2Q8IZJ0 200 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 DDX46Q7L014 1031 aaKnown RBP8.95□□□□□ -0.98
SCN9A-202ENST00000409435 AFF2P51816 1311 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 IL27Q8NEV9 243 aa8.95□□□□□ -0.98
SCN9A-202ENST00000409435 RIPK4P57078 832 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 IRX6P78412 446 aaPredicted RBP8.94□□□□□ -0.98
SCN9A-202ENST00000409435 ARAP1Q96P48 1450 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 RAPGEF6Q8TEU7 1601 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 SUPT6HQ7KZ85 1726 aaKnown RBP8.94□□□□□ -0.98
SCN9A-202ENST00000409435 AKAP17AQ02040 695 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms