RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TCP11L2Q8N4U5 519 aa16.32■□□□□ 0.2
PTPRN-202ENST00000409251 RIMS2Q9UQ26 1411 aa16.32■□□□□ 0.2
PTPRN-202ENST00000409251 CFAP53Q96M91 514 aa16.32■□□□□ 0.2
PTPRN-202ENST00000409251 ADGRB3O60242 1522 aa16.32■□□□□ 0.2
PTPRN-202ENST00000409251 HSCBQ8IWL3 235 aa16.32■□□□□ 0.2
PTPRN-202ENST00000409251 RICTORQ6R327 1708 aa16.31■□□□□ 0.2
PTPRN-202ENST00000409251 CAMSAP1Q5T5Y3 1602 aa16.31■□□□□ 0.2
PTPRN-202ENST00000409251 FYB1O15117 783 aa16.31■□□□□ 0.2
PTPRN-202ENST00000409251 MPNDQ8N594 471 aa16.31■□□□□ 0.2
PTPRN-202ENST00000409251 A0A1W2PP64 1363 aa16.31■□□□□ 0.2
PTPRN-202ENST00000409251 ASXL1Q8IXJ9 1541 aa16.3■□□□□ 0.2
PTPRN-202ENST00000409251 FTSJ3Q8IY81 847 aaKnown RBP16.3■□□□□ 0.2
PTPRN-202ENST00000409251 GRPEL1Q9HAV7 217 aa16.3■□□□□ 0.2
PTPRN-202ENST00000409251 POLR1AO95602 1720 aaPredicted RBP16.3■□□□□ 0.2
PTPRN-202ENST00000409251 YTHDC2Q9H6S0 1430 aaKnown RBP16.3■□□□□ 0.2
PTPRN-202ENST00000409251 MYOM2P54296 1465 aa16.3■□□□□ 0.2
PTPRN-202ENST00000409251 PDZRN3Q9UPQ7 1066 aa16.3■□□□□ 0.2
PTPRN-202ENST00000409251 PRDM10Q9NQV6 1147 aa16.29■□□□□ 0.2
PTPRN-202ENST00000409251 EMILIN1Q9Y6C2 1016 aa16.29■□□□□ 0.2
PTPRN-202ENST00000409251 KIAA1211Q6ZU35 1233 aa16.29■□□□□ 0.2
PTPRN-202ENST00000409251 TSR2Q969E8 191 aaKnown RBP16.29■□□□□ 0.2
PTPRN-202ENST00000409251 FOXD4L5Q5VV16 416 aaPredicted RBP16.28■□□□□ 0.2
PTPRN-202ENST00000409251 FOXD4L4Q8WXT5 416 aaPredicted RBP16.28■□□□□ 0.2
PTPRN-202ENST00000409251 ELL2O00472 640 aaPredicted RBP16.28■□□□□ 0.2
PTPRN-202ENST00000409251 RRP9O43818 475 aaKnown RBP16.28■□□□□ 0.2
PTPRN-202ENST00000409251 SLC24A1O60721 1099 aa16.28■□□□□ 0.2
PTPRN-202ENST00000409251 EID1Q9Y6B2 187 aa16.28■□□□□ 0.2
PTPRN-202ENST00000409251 LMTK2Q8IWU2 1503 aa16.28■□□□□ 0.2
PTPRN-202ENST00000409251 NUDT16Q96DE0 195 aaKnown RBP16.27■□□□□ 0.2
PTPRN-202ENST00000409251 THUMPD2Q9BTF0 503 aaKnown RBP16.27■□□□□ 0.2
PTPRN-202ENST00000409251 TNRQ92752 1358 aa16.27■□□□□ 0.2
PTPRN-202ENST00000409251 MSNP26038 577 aaKnown RBP16.27■□□□□ 0.2
PTPRN-202ENST00000409251 LMOD2Q6P5Q4 547 aa16.27■□□□□ 0.2
PTPRN-202ENST00000409251 R3HCC1Q9Y3T6 440 aaKnown RBP16.27■□□□□ 0.2
PTPRN-202ENST00000409251 C22orf23Q9BZE7 217 aa16.26■□□□□ 0.19
PTPRN-202ENST00000409251 CLCN1P35523 988 aa16.26■□□□□ 0.19
PTPRN-202ENST00000409251 MRE11P49959 708 aa16.25■□□□□ 0.19
PTPRN-202ENST00000409251 ERBB4Q15303 1308 aa16.25■□□□□ 0.19
PTPRN-202ENST00000409251 MYO5BQ9ULV0 1848 aa16.25■□□□□ 0.19
PTPRN-202ENST00000409251 CLTCQ00610 1675 aaKnown RBP16.25■□□□□ 0.19
PTPRN-202ENST00000409251 IQGAP1P46940 1657 aa16.24■□□□□ 0.19
PTPRN-202ENST00000409251 CHMP5Q9NZZ3 219 aa16.24■□□□□ 0.19
PTPRN-202ENST00000409251 AMOTL2Q9Y2J4 779 aa16.24■□□□□ 0.19
PTPRN-202ENST00000409251 PIK3C2BO00750 1634 aa16.24■□□□□ 0.19
PTPRN-202ENST00000409251 WASLO00401 505 aaPredicted RBP16.24■□□□□ 0.19
PTPRN-202ENST00000409251 HDGFP51858 240 aaKnown RBP16.24■□□□□ 0.19
PTPRN-202ENST00000409251 USP19O94966 1318 aa16.24■□□□□ 0.19
PTPRN-202ENST00000409251 NEXMIFQ5QGS0 1516 aa16.24■□□□□ 0.19
PTPRN-202ENST00000409251 WWC1Q8IX03 1113 aa16.23■□□□□ 0.19
PTPRN-202ENST00000409251 MAPK8IP3Q9UPT6 1336 aa16.23■□□□□ 0.19
PTPRN-202ENST00000409251 XPCQ01831 940 aaPredicted RBP16.23■□□□□ 0.19
PTPRN-202ENST00000409251 LTV1Q96GA3 475 aaPredicted RBP16.23■□□□□ 0.19
PTPRN-202ENST00000409251 SLFN5Q08AF3 891 aa16.23■□□□□ 0.19
PTPRN-202ENST00000409251 PCDHB15Q9Y5E8 787 aa16.23■□□□□ 0.19
PTPRN-202ENST00000409251 FOXD4L6Q3SYB3 417 aaPredicted RBP16.22■□□□□ 0.19
PTPRN-202ENST00000409251 DNTTIP2Q5QJE6 756 aaKnown RBP16.22■□□□□ 0.19
PTPRN-202ENST00000409251 FOXD4L3Q6VB84 417 aaPredicted RBP16.22■□□□□ 0.19
PTPRN-202ENST00000409251 ITPRIPQ8IWB1 547 aa16.22■□□□□ 0.19
PTPRN-202ENST00000409251 NGDNQ8NEJ9 315 aaKnown RBP16.22■□□□□ 0.19
PTPRN-202ENST00000409251 ADGRB1O14514 1584 aa16.22■□□□□ 0.19
PTPRN-202ENST00000409251 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.21■□□□□ 0.19
PTPRN-202ENST00000409251 GLI2P10070 1586 aa16.21■□□□□ 0.19
PTPRN-202ENST00000409251 A2ML1A8K2U0 1454 aa16.21■□□□□ 0.19
PTPRN-202ENST00000409251 ARHGAP31Q2M1Z3 1444 aa16.21■□□□□ 0.19
PTPRN-202ENST00000409251 KDM5AP29375 1690 aaKnown RBP16.21■□□□□ 0.18
PTPRN-202ENST00000409251 RUNDC1Q96C34 613 aa16.2■□□□□ 0.18
PTPRN-202ENST00000409251 ZHX1Q9UKY1 873 aaPredicted RBP16.2■□□□□ 0.18
PTPRN-202ENST00000409251 DDX49Q9Y6V7 483 aaKnown RBP16.2■□□□□ 0.18
PTPRN-202ENST00000409251 ANKRD36BQ8N2N9 1353 aa16.2■□□□□ 0.18
PTPRN-202ENST00000409251 DIAPH1O60610 1272 aaKnown RBP16.19■□□□□ 0.18
PTPRN-202ENST00000409251 RLBP1P12271 317 aa16.19■□□□□ 0.18
PTPRN-202ENST00000409251 LNPKQ9C0E8 428 aa16.19■□□□□ 0.18
PTPRN-202ENST00000409251 RIPK4P57078 832 aa16.19■□□□□ 0.18
PTPRN-202ENST00000409251 DCTN1Q14203 1278 aa16.19■□□□□ 0.18
PTPRN-202ENST00000409251 PRKAR2BP31323 418 aa16.18■□□□□ 0.18
PTPRN-202ENST00000409251 GAS2L3Q86XJ1 694 aa16.18■□□□□ 0.18
PTPRN-202ENST00000409251 TULP4Q9NRJ4 1543 aa16.18■□□□□ 0.18
PTPRN-202ENST00000409251 NRXN1Q9ULB1 1477 aa16.18■□□□□ 0.18
PTPRN-202ENST00000409251 APBB1O00213 710 aa16.18■□□□□ 0.18
PTPRN-202ENST00000409251 CCDC61Q9Y6R9 512 aa16.18■□□□□ 0.18
PTPRN-202ENST00000409251 TBC1D32Q96NH3 1257 aa16.18■□□□□ 0.18
PTPRN-202ENST00000409251 RWDD1Q9H446 243 aaPredicted RBP16.18■□□□□ 0.18
PTPRN-202ENST00000409251 COG3Q96JB2 828 aa16.17■□□□□ 0.18
PTPRN-202ENST00000409251 BCL11BQ9C0K0 894 aaPredicted RBP16.17■□□□□ 0.18
PTPRN-202ENST00000409251 PPLO60437 1756 aa16.17■□□□□ 0.18
PTPRN-202ENST00000409251 PREX1Q8TCU6 1659 aa16.17■□□□□ 0.18
PTPRN-202ENST00000409251 PTMAP06454 111 aaKnown RBP16.17■□□□□ 0.18
PTPRN-202ENST00000409251 PLCB2Q00722 1185 aa16.17■□□□□ 0.18
PTPRN-202ENST00000409251 E9PSI1 815 aa16.16■□□□□ 0.18
PTPRN-202ENST00000409251 KCNA6P17658 529 aa16.16■□□□□ 0.18
PTPRN-202ENST00000409251 NASPP49321 788 aaPredicted RBP16.16■□□□□ 0.18
PTPRN-202ENST00000409251 PRR36Q9H6K5 1346 aa16.16■□□□□ 0.18
PTPRN-202ENST00000409251 QRICH2Q9H0J4 1663 aa16.16■□□□□ 0.18
PTPRN-202ENST00000409251 ROBO2Q9HCK4 1378 aa16.16■□□□□ 0.18
PTPRN-202ENST00000409251 RNF214Q8ND24 703 aa16.15■□□□□ 0.18
PTPRN-202ENST00000409251 ANTXR1Q9H6X2 564 aa16.15■□□□□ 0.18
PTPRN-202ENST00000409251 POLKQ9UBT6 870 aa16.15■□□□□ 0.18
PTPRN-202ENST00000409251 ATAD2Q6PL18 1390 aa16.15■□□□□ 0.18
PTPRN-202ENST00000409251 PPP6R1Q9UPN7 881 aa16.15■□□□□ 0.18
PTPRN-202ENST00000409251 LAMC1P11047 1609 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms