RNA–Protein interactions for RNA: ENST00000408314.1

SNORD88A-201, Transcript of small nucleolar RNA, C/D box 88A, humanhuman

BASIC

Gene SNORD88A, Length 91 nt, Biotype snoRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNORD88A-201ENST00000408314 GJD4Q96KN9 370 aaPredicted RBP12.97□□□□□ -0.33
SNORD88A-201ENST00000408314 PLCH1Q4KWH8 1693 aa12.96□□□□□ -0.33
SNORD88A-201ENST00000408314 PLEKHG3A1L390 1219 aa12.96□□□□□ -0.33
SNORD88A-201ENST00000408314 UPF1Q92900 1129 aaKnown RBP eCLIP12.96□□□□□ -0.33
SNORD88A-201ENST00000408314 EVC2Q86UK5 1308 aa12.95□□□□□ -0.34
SNORD88A-201ENST00000408314 CABLES1Q8TDN4 633 aa12.95□□□□□ -0.34
SNORD88A-201ENST00000408314 PPIP5K1Q6PFW1 1433 aa12.95□□□□□ -0.34
SNORD88A-201ENST00000408314 COL14A1Q05707 1796 aaKnown RBP12.94□□□□□ -0.34
SNORD88A-201ENST00000408314 VPS72Q15906 364 aa12.94□□□□□ -0.34
SNORD88A-201ENST00000408314 ACEP12821 1306 aa12.93□□□□□ -0.34
SNORD88A-201ENST00000408314 RALGAPBQ86X10 1494 aa12.93□□□□□ -0.34
SNORD88A-201ENST00000408314 PLEKHG5O94827 1062 aa12.93□□□□□ -0.34
SNORD88A-201ENST00000408314 NBPF8Q3BBV2 869 aa12.92□□□□□ -0.34
SNORD88A-201ENST00000408314 CCDC9Q9Y3X0 531 aaKnown RBP12.92□□□□□ -0.34
SNORD88A-201ENST00000408314 SBNO2Q9Y2G9 1366 aa12.92□□□□□ -0.34
SNORD88A-201ENST00000408314 CRYBG1Q9Y4K1 1723 aa12.91□□□□□ -0.34
SNORD88A-201ENST00000408314 GLI3P10071 1580 aa12.91□□□□□ -0.34
SNORD88A-201ENST00000408314 CCDC125Q86Z20 511 aa12.91□□□□□ -0.34
SNORD88A-201ENST00000408314 PRDM11Q9NQV5 511 aa12.91□□□□□ -0.34
SNORD88A-201ENST00000408314 ABTB2Q8N961 1025 aa12.9□□□□□ -0.34
SNORD88A-201ENST00000408314 CARD11Q9BXL7 1154 aa12.9□□□□□ -0.34
SNORD88A-201ENST00000408314 CABP2Q9NPB3 220 aa12.9□□□□□ -0.34
SNORD88A-201ENST00000408314 PHRF1Q9P1Y6 1649 aaKnown RBP12.9□□□□□ -0.34
SNORD88A-201ENST00000408314 NRAPQ86VF7 1730 aa12.89□□□□□ -0.35
SNORD88A-201ENST00000408314 FAM83GA6ND36 823 aa12.89□□□□□ -0.35
SNORD88A-201ENST00000408314 SLC24A1O60721 1099 aa12.89□□□□□ -0.35
SNORD88A-201ENST00000408314 NLRP13Q86W25 1043 aa12.89□□□□□ -0.35
SNORD88A-201ENST00000408314 BTG4Q9NY30 223 aa12.89□□□□□ -0.35
SNORD88A-201ENST00000408314 USP6P35125 1406 aa12.88□□□□□ -0.35
SNORD88A-201ENST00000408314 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
SNORD88A-201ENST00000408314 A0A0G2JS52 829 aa12.87□□□□□ -0.35
SNORD88A-201ENST00000408314 MYT1Q01538 1121 aa12.87□□□□□ -0.35
SNORD88A-201ENST00000408314 ZNF692Q9BU19 519 aaPredicted RBP12.87□□□□□ -0.35
SNORD88A-201ENST00000408314 CABP1Q9NZU7 370 aa12.87□□□□□ -0.35
SNORD88A-201ENST00000408314 USP19O94966 1318 aa12.87□□□□□ -0.35
SNORD88A-201ENST00000408314 NRKQ7Z2Y5 1582 aa12.86□□□□□ -0.35
SNORD88A-201ENST00000408314 CPDO75976 1380 aa12.86□□□□□ -0.35
SNORD88A-201ENST00000408314 ONECUT3O60422 494 aaPredicted RBP12.85□□□□□ -0.35
SNORD88A-201ENST00000408314 SEPT12Q8IYM1 358 aa12.85□□□□□ -0.35
SNORD88A-201ENST00000408314 SF3B2Q13435 895 aaKnown RBP12.84□□□□□ -0.35
SNORD88A-201ENST00000408314 NUTM2GQ5VZR2 741 aa12.84□□□□□ -0.35
SNORD88A-201ENST00000408314 BLMP54132 1417 aaPredicted RBP12.84□□□□□ -0.35
SNORD88A-201ENST00000408314 SPATA31A5Q5VU36 1347 aa12.84□□□□□ -0.35
SNORD88A-201ENST00000408314 SPATA31A7Q8IWB4 1347 aa12.84□□□□□ -0.35
SNORD88A-201ENST00000408314 TTC21AQ8NDW8 1320 aa12.84□□□□□ -0.35
SNORD88A-201ENST00000408314 CLSPNQ9HAW4 1339 aa12.84□□□□□ -0.35
SNORD88A-201ENST00000408314 NLRP6P59044 892 aa12.83□□□□□ -0.36
SNORD88A-201ENST00000408314 ZC3H6P61129 1189 aaKnown RBP12.83□□□□□ -0.36
SNORD88A-201ENST00000408314 KRT27Q7Z3Y8 459 aa12.83□□□□□ -0.36
SNORD88A-201ENST00000408314 EVA1CP58658 441 aa12.82□□□□□ -0.36
SNORD88A-201ENST00000408314 KCNH5Q8NCM2 988 aa12.82□□□□□ -0.36
SNORD88A-201ENST00000408314 PUS7Q96PZ0 661 aaKnown RBP12.82□□□□□ -0.36
SNORD88A-201ENST00000408314 TIMELESSQ9UNS1 1208 aa12.82□□□□□ -0.36
SNORD88A-201ENST00000408314 SLIT3O75094 1523 aa12.82□□□□□ -0.36
SNORD88A-201ENST00000408314 NINLQ9Y2I6 1382 aa12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 AKAP12Q02952 1782 aa12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 SSH2Q76I76 1423 aa12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 GCP02774 474 aa12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 FAM98CQ17RN3 349 aaKnown RBP12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 STRN4Q9NRL3 753 aa12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 BRWD3Q6RI45 1802 aa12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 KTN1Q86UP2 1357 aaKnown RBP12.81□□□□□ -0.36
SNORD88A-201ENST00000408314 CPSF1Q10570 1443 aaKnown RBP12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 CHRNA2Q15822 529 aa12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 HDGFL2Q7Z4V5 671 aaPredicted RBP12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 SPATA31A1Q5TZJ5 1347 aa12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 TTC21BQ7Z4L5 1316 aa12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 PIK3C2AO00443 1686 aa12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 LMO7Q8WWI1 1683 aa12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 THSD7AQ9UPZ6 1657 aa12.8□□□□□ -0.36
SNORD88A-201ENST00000408314 TERF2IPQ9NYB0 399 aa12.79□□□□□ -0.36
SNORD88A-201ENST00000408314 AATKQ6ZMQ8 1374 aa12.79□□□□□ -0.36
SNORD88A-201ENST00000408314 MON2Q7Z3U7 1717 aa12.79□□□□□ -0.36
SNORD88A-201ENST00000408314 EP400Q96L91 3159 aa12.78□□□□□ -0.36
SNORD88A-201ENST00000408314 THRAP3Q9Y2W1 955 aaKnown RBP12.78□□□□□ -0.36
SNORD88A-201ENST00000408314 ABCC6O95255 1503 aa12.78□□□□□ -0.36
SNORD88A-201ENST00000408314 C11orf95C9JLR9 678 aaPredicted RBP12.77□□□□□ -0.37
SNORD88A-201ENST00000408314 BARGINQ6ZT62 677 aa12.77□□□□□ -0.37
SNORD88A-201ENST00000408314 TCP11L2Q8N4U5 519 aa12.77□□□□□ -0.37
SNORD88A-201ENST00000408314 TMC1Q8TDI8 760 aa12.77□□□□□ -0.37
SNORD88A-201ENST00000408314 ZRANB1Q9UGI0 708 aa12.77□□□□□ -0.37
SNORD88A-201ENST00000408314 COL5A2P05997 1499 aaPredicted RBP12.77□□□□□ -0.37
SNORD88A-201ENST00000408314 CAMTA1Q9Y6Y1 1673 aa12.77□□□□□ -0.37
SNORD88A-201ENST00000408314 BAG6P46379 1132 aa12.76□□□□□ -0.37
SNORD88A-201ENST00000408314 CRB1P82279 1406 aa12.76□□□□□ -0.37
SNORD88A-201ENST00000408314 EDC4Q6P2E9 1401 aaKnown RBP12.76□□□□□ -0.37
SNORD88A-201ENST00000408314 ZBTB7CA1YPR0 619 aa12.75□□□□□ -0.37
SNORD88A-201ENST00000408314 RGPD1P0DJD0 1748 aa12.75□□□□□ -0.37
SNORD88A-201ENST00000408314 CDCA8Q53HL2 280 aa12.75□□□□□ -0.37
SNORD88A-201ENST00000408314 USP31Q70CQ4 1352 aa12.75□□□□□ -0.37
SNORD88A-201ENST00000408314 USP54Q70EL1 1684 aa12.74□□□□□ -0.37
SNORD88A-201ENST00000408314 USP47Q96K76 1375 aa12.74□□□□□ -0.37
SNORD88A-201ENST00000408314 ST20-MTHFSA0A0A6YYL1 179 aa12.74□□□□□ -0.37
SNORD88A-201ENST00000408314 TMF1P82094 1093 aa12.74□□□□□ -0.37
SNORD88A-201ENST00000408314 LARP1Q6PKG0 1096 aaKnown RBP12.74□□□□□ -0.37
SNORD88A-201ENST00000408314 USP35Q9P2H5 1018 aa12.74□□□□□ -0.37
SNORD88A-201ENST00000408314 PDE3BQ13370 1112 aa12.73□□□□□ -0.37
SNORD88A-201ENST00000408314 FAM196AQ6ZSG2 479 aa12.73□□□□□ -0.37
SNORD88A-201ENST00000408314 CDCA7Q9BWT1 371 aaPredicted RBP12.73□□□□□ -0.37
SNORD88A-201ENST00000408314 WDR17Q8IZU2 1322 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms