RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 CRYBG1Q9Y4K1 1723 aa27.7■■■□□ 2.03
SMARCB1-204ENST00000407422 GLI3P10071 1580 aa27.7■■■□□ 2.02
SMARCB1-204ENST00000407422 ACEP12821 1306 aa27.69■■■□□ 2.02
SMARCB1-204ENST00000407422 RALGAPBQ86X10 1494 aa27.69■■■□□ 2.02
SMARCB1-204ENST00000407422 POLR3AO14802 1390 aaPredicted RBP27.69■■■□□ 2.02
SMARCB1-204ENST00000407422 SRPK2P78362 688 aaKnown RBP27.68■■■□□ 2.02
SMARCB1-204ENST00000407422 TRIM26Q12899 539 aaPredicted RBP27.68■■■□□ 2.02
SMARCB1-204ENST00000407422 CABP2Q9NPB3 220 aa27.68■■■□□ 2.02
SMARCB1-204ENST00000407422 PLEKHG3A1L390 1219 aa27.67■■■□□ 2.02
SMARCB1-204ENST00000407422 NBPF8Q3BBV2 869 aa27.67■■■□□ 2.02
SMARCB1-204ENST00000407422 ROCK2O75116 1388 aaKnown RBP27.67■■■□□ 2.02
SMARCB1-204ENST00000407422 ATAD2Q6PL18 1390 aa27.64■■■□□ 2.02
SMARCB1-204ENST00000407422 VPS72Q15906 364 aa27.63■■■□□ 2.01
SMARCB1-204ENST00000407422 PPIP5K1Q6PFW1 1433 aa27.63■■■□□ 2.01
SMARCB1-204ENST00000407422 NUTM2GQ5VZR2 741 aa27.63■■■□□ 2.01
SMARCB1-204ENST00000407422 NRAPQ86VF7 1730 aa27.62■■■□□ 2.01
SMARCB1-204ENST00000407422 COL14A1Q05707 1796 aaKnown RBP27.62■■■□□ 2.01
SMARCB1-204ENST00000407422 BTG4Q9NY30 223 aa27.61■■■□□ 2.01
SMARCB1-204ENST00000407422 CCDC9Q9Y3X0 531 aaKnown RBP27.6■■■□□ 2.01
SMARCB1-204ENST00000407422 PHRF1Q9P1Y6 1649 aaKnown RBP27.6■■■□□ 2.01
SMARCB1-204ENST00000407422 BRWD3Q6RI45 1802 aa27.59■■■□□ 2.01
SMARCB1-204ENST00000407422 CABP1Q9NZU7 370 aa27.57■■■□□ 2
SMARCB1-204ENST00000407422 EVC2Q86UK5 1308 aa27.56■■■□□ 2
SMARCB1-204ENST00000407422 PRDM11Q9NQV5 511 aa27.56■■■□□ 2
SMARCB1-204ENST00000407422 TONSLQ96HA7 1378 aa27.55■■■□□ 2
SMARCB1-204ENST00000407422 SEPT12Q8IYM1 358 aa27.55■■■□□ 2
SMARCB1-204ENST00000407422 ABTB2Q8N961 1025 aa27.55■■■□□ 2
SMARCB1-204ENST00000407422 KIAA0232Q92628 1395 aa27.55■■■□□ 2
SMARCB1-204ENST00000407422 ONECUT3O60422 494 aaPredicted RBP27.52■■■□□ 2
SMARCB1-204ENST00000407422 ZC3H6P61129 1189 aaKnown RBP27.52■■■□□ 2
SMARCB1-204ENST00000407422 CHRNA2Q15822 529 aa27.52■■■□□ 2
SMARCB1-204ENST00000407422 CARD11Q9BXL7 1154 aa27.5■■□□□ 1.99
SMARCB1-204ENST00000407422 NRKQ7Z2Y5 1582 aa27.5■■□□□ 1.99
SMARCB1-204ENST00000407422 USP6P35125 1406 aa27.49■■□□□ 1.99
SMARCB1-204ENST00000407422 FAM98CQ17RN3 349 aaKnown RBP27.48■■□□□ 1.99
SMARCB1-204ENST00000407422 USP19O94966 1318 aa27.47■■□□□ 1.99
SMARCB1-204ENST00000407422 SPATA31A5Q5VU36 1347 aa27.46■■□□□ 1.99
SMARCB1-204ENST00000407422 SPATA31A7Q8IWB4 1347 aa27.46■■□□□ 1.99
SMARCB1-204ENST00000407422 NLRP13Q86W25 1043 aa27.45■■□□□ 1.99
SMARCB1-204ENST00000407422 BRD4O60885 1362 aaPredicted RBP27.45■■□□□ 1.98
SMARCB1-204ENST00000407422 A0A0G2JS52 829 aa27.45■■□□□ 1.98
SMARCB1-204ENST00000407422 MYT1Q01538 1121 aa27.45■■□□□ 1.98
SMARCB1-204ENST00000407422 SSH2Q76I76 1423 aa27.44■■□□□ 1.98
SMARCB1-204ENST00000407422 KRT27Q7Z3Y8 459 aa27.43■■□□□ 1.98
SMARCB1-204ENST00000407422 STRN4Q9NRL3 753 aa27.43■■□□□ 1.98
SMARCB1-204ENST00000407422 AKAP12Q02952 1782 aa27.42■■□□□ 1.98
SMARCB1-204ENST00000407422 GCP02774 474 aa27.42■■□□□ 1.98
SMARCB1-204ENST00000407422 CCDC125Q86Z20 511 aa27.41■■□□□ 1.98
SMARCB1-204ENST00000407422 SBNO2Q9Y2G9 1366 aa27.41■■□□□ 1.98
SMARCB1-204ENST00000407422 PIK3C2AO00443 1686 aa27.41■■□□□ 1.98
SMARCB1-204ENST00000407422 CPDO75976 1380 aa27.41■■□□□ 1.98
SMARCB1-204ENST00000407422 CAMTA1Q9Y6Y1 1673 aa27.4■■□□□ 1.98
SMARCB1-204ENST00000407422 NLRP6P59044 892 aa27.4■■□□□ 1.98
SMARCB1-204ENST00000407422 LMO7Q8WWI1 1683 aa27.39■■□□□ 1.98
SMARCB1-204ENST00000407422 SRCAPQ6ZRS2 3230 aa27.39■■□□□ 1.97
SMARCB1-204ENST00000407422 SPATA31A1Q5TZJ5 1347 aa27.38■■□□□ 1.97
SMARCB1-204ENST00000407422 BLMP54132 1417 aaPredicted RBP27.37■■□□□ 1.97
SMARCB1-204ENST00000407422 THSD7AQ9UPZ6 1657 aa27.37■■□□□ 1.97
SMARCB1-204ENST00000407422 ZNF692Q9BU19 519 aaPredicted RBP27.37■■□□□ 1.97
SMARCB1-204ENST00000407422 CPSF1Q10570 1443 aaKnown RBP27.36■■□□□ 1.97
SMARCB1-204ENST00000407422 EVA1CP58658 441 aa27.36■■□□□ 1.97
SMARCB1-204ENST00000407422 SLIT3O75094 1523 aa27.35■■□□□ 1.97
SMARCB1-204ENST00000407422 TTC21BQ7Z4L5 1316 aa27.35■■□□□ 1.97
SMARCB1-204ENST00000407422 USP35Q9P2H5 1018 aa27.34■■□□□ 1.97
SMARCB1-204ENST00000407422 LARP1Q6PKG0 1096 aaKnown RBP27.33■■□□□ 1.97
SMARCB1-204ENST00000407422 KTN1Q86UP2 1357 aaKnown RBP27.33■■□□□ 1.97
SMARCB1-204ENST00000407422 MON2Q7Z3U7 1717 aa27.32■■□□□ 1.96
SMARCB1-204ENST00000407422 ZBTB7CA1YPR0 619 aa27.32■■□□□ 1.96
SMARCB1-204ENST00000407422 FAM182BQ5T319 152 aa27.32■■□□□ 1.96
SMARCB1-204ENST00000407422 DEFB132Q7Z7B7 95 aa27.3■■□□□ 1.96
SMARCB1-204ENST00000407422 CD163L1Q9NR16 1453 aa27.29■■□□□ 1.96
SMARCB1-204ENST00000407422 TMC1Q8TDI8 760 aa27.29■■□□□ 1.96
SMARCB1-204ENST00000407422 TTC21AQ8NDW8 1320 aa27.29■■□□□ 1.96
SMARCB1-204ENST00000407422 COL5A2P05997 1499 aaPredicted RBP27.29■■□□□ 1.96
SMARCB1-204ENST00000407422 ST20-MTHFSA0A0A6YYL1 179 aa27.28■■□□□ 1.96
SMARCB1-204ENST00000407422 SLC12A5Q9H2X9 1139 aa27.27■■□□□ 1.96
SMARCB1-204ENST00000407422 COL18A1P39060 1754 aa27.27■■□□□ 1.96
SMARCB1-204ENST00000407422 SF3B2Q13435 895 aaKnown RBP27.27■■□□□ 1.96
SMARCB1-204ENST00000407422 TESK2Q96S53 571 aa27.27■■□□□ 1.96
SMARCB1-204ENST00000407422 AATKQ6ZMQ8 1374 aa27.26■■□□□ 1.95
SMARCB1-204ENST00000407422 SOX12O15370 315 aa27.26■■□□□ 1.95
SMARCB1-204ENST00000407422 BARGINQ6ZT62 677 aa27.25■■□□□ 1.95
SMARCB1-204ENST00000407422 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.25■■□□□ 1.957e-7■■□□□ 13.6
SMARCB1-204ENST00000407422 TCP11L2Q8N4U5 519 aa27.24■■□□□ 1.95
SMARCB1-204ENST00000407422 PCGF6Q9BYE7 350 aa27.24■■□□□ 1.95
SMARCB1-204ENST00000407422 ZRANB1Q9UGI0 708 aa27.24■■□□□ 1.95
SMARCB1-204ENST00000407422 AXIN2Q9Y2T1 843 aa27.23■■□□□ 1.95
SMARCB1-204ENST00000407422 RGPD5Q99666 1765 aa27.22■■□□□ 1.95
SMARCB1-204ENST00000407422 ARHGEF25Q86VW2 580 aa27.22■■□□□ 1.95
SMARCB1-204ENST00000407422 KCNH5Q8NCM2 988 aa27.22■■□□□ 1.95
SMARCB1-204ENST00000407422 NFAT5O94916 1531 aa27.2■■□□□ 1.95
SMARCB1-204ENST00000407422 NME9Q86XW9 330 aa27.2■■□□□ 1.95
SMARCB1-204ENST00000407422 PUS7Q96PZ0 661 aaKnown RBP27.2■■□□□ 1.95
SMARCB1-204ENST00000407422 CRB1P82279 1406 aa27.2■■□□□ 1.94
SMARCB1-204ENST00000407422 HDGFL2Q7Z4V5 671 aaPredicted RBP27.19■■□□□ 1.94
SMARCB1-204ENST00000407422 RGPD1P0DJD0 1748 aa27.19■■□□□ 1.94
SMARCB1-204ENST00000407422 A0A1W2PP64 1363 aa27.19■■□□□ 1.94
SMARCB1-204ENST00000407422 THRAP3Q9Y2W1 955 aaKnown RBP27.19■■□□□ 1.94
SMARCB1-204ENST00000407422 USP54Q70EL1 1684 aa27.17■■□□□ 1.94
SMARCB1-204ENST00000407422 USP31Q70CQ4 1352 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms