RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 COL3A1P02461 1466 aaPredicted RBP32.32■■■□□ 2.77
DNMT3A-206ENST00000406659 IQSEC2Q5JU85 1478 aa32.32■■■□□ 2.77
DNMT3A-206ENST00000406659 SPINK5Q9NQ38 1064 aaPredicted RBP32.32■■■□□ 2.76
DNMT3A-206ENST00000406659 U2SURPO15042 1029 aaKnown RBP32.31■■■□□ 2.76
DNMT3A-206ENST00000406659 NEUROD2Q15784 382 aa32.31■■■□□ 2.76
DNMT3A-206ENST00000406659 EXOC6Q8TAG9 804 aa32.3■■■□□ 2.76
DNMT3A-206ENST00000406659 RRP7AQ9Y3A4 280 aaKnown RBP32.3■■■□□ 2.76
DNMT3A-206ENST00000406659 PLIN1O60240 522 aa32.29■■■□□ 2.76
DNMT3A-206ENST00000406659 ITSN1Q15811 1721 aa32.29■■■□□ 2.76
DNMT3A-206ENST00000406659 NKTRP30414 1462 aaKnown RBP32.28■■■□□ 2.76
DNMT3A-206ENST00000406659 DIAPH1O60610 1272 aaKnown RBP32.28■■■□□ 2.76
DNMT3A-206ENST00000406659 MON2Q7Z3U7 1717 aa32.28■■■□□ 2.76
DNMT3A-206ENST00000406659 PNPLA6Q8IY17 1366 aa32.28■■■□□ 2.76
DNMT3A-206ENST00000406659 AKAP12Q02952 1782 aa32.27■■■□□ 2.76
DNMT3A-206ENST00000406659 NCBP3Q53F19 620 aaKnown RBP32.27■■■□□ 2.76
DNMT3A-206ENST00000406659 NME9Q86XW9 330 aa32.27■■■□□ 2.76
DNMT3A-206ENST00000406659 PTCH1Q13635 1447 aa32.27■■■□□ 2.76
DNMT3A-206ENST00000406659 DMRT2Q9Y5R5 561 aa32.27■■■□□ 2.76
DNMT3A-206ENST00000406659 CCDC27Q2M243 656 aa32.25■■■□□ 2.75
DNMT3A-206ENST00000406659 POLKQ9UBT6 870 aa32.24■■■□□ 2.75
DNMT3A-206ENST00000406659 WDR63Q8IWG1 891 aa32.24■■■□□ 2.75
DNMT3A-206ENST00000406659 COG3Q96JB2 828 aa32.24■■■□□ 2.75
DNMT3A-206ENST00000406659 PHF23Q9BUL5 403 aaPredicted RBP32.24■■■□□ 2.75
DNMT3A-206ENST00000406659 ADAMTSL3P82987 1691 aa32.23■■■□□ 2.75
DNMT3A-206ENST00000406659 PLEKHG3A1L390 1219 aa32.22■■■□□ 2.75
DNMT3A-206ENST00000406659 GOLGA6L2Q8N9W4 650 aaPredicted RBP32.22■■■□□ 2.75
DNMT3A-206ENST00000406659 PPM1GO15355 546 aaPredicted RBP32.22■■■□□ 2.75
DNMT3A-206ENST00000406659 NUTM2FA1L443 756 aa32.21■■■□□ 2.75
DNMT3A-206ENST00000406659 PNNQ9H307 717 aaKnown RBP32.21■■■□□ 2.75
DNMT3A-206ENST00000406659 ZRANB1Q9UGI0 708 aa32.2■■■□□ 2.75
DNMT3A-206ENST00000406659 TOPAZ1Q8N9V7 1692 aa32.2■■■□□ 2.75
DNMT3A-206ENST00000406659 ANKLE2Q86XL3 938 aa32.19■■■□□ 2.74
DNMT3A-206ENST00000406659 ACEP12821 1306 aa32.19■■■□□ 2.74
DNMT3A-206ENST00000406659 FBLN1P23142 703 aa32.19■■■□□ 2.74
DNMT3A-206ENST00000406659 PLEKHF1Q96S99 279 aa32.19■■■□□ 2.74
DNMT3A-206ENST00000406659 PIK3R4Q99570 1358 aa32.18■■■□□ 2.74
DNMT3A-206ENST00000406659 MAP2P11137 1827 aaKnown RBP32.18■■■□□ 2.74
DNMT3A-206ENST00000406659 MAPK8IP3Q9UPT6 1336 aa32.18■■■□□ 2.74
DNMT3A-206ENST00000406659 AATKQ6ZMQ8 1374 aa32.17■■■□□ 2.74
DNMT3A-206ENST00000406659 XRN1Q8IZH2 1706 aaKnown RBP32.17■■■□□ 2.74
DNMT3A-206ENST00000406659 CRBNQ96SW2 442 aa32.16■■■□□ 2.74
DNMT3A-206ENST00000406659 ZNF142P52746 1687 aaPredicted RBP32.15■■■□□ 2.74
DNMT3A-206ENST00000406659 TTC21BQ7Z4L5 1316 aa32.15■■■□□ 2.74
DNMT3A-206ENST00000406659 EMILIN1Q9Y6C2 1016 aa32.13■■■□□ 2.73
DNMT3A-206ENST00000406659 TMPOP42166 694 aaKnown RBP32.12■■■□□ 2.73
DNMT3A-206ENST00000406659 FCHSD2O94868 740 aa32.12■■■□□ 2.73
DNMT3A-206ENST00000406659 KCNA6P17658 529 aa32.12■■■□□ 2.73
DNMT3A-206ENST00000406659 SETD1BQ9UPS6 1966 aaKnown RBP32.11■■■□□ 2.73
DNMT3A-206ENST00000406659 C20orf194Q5TEA3 1177 aa32.1■■■□□ 2.73
DNMT3A-206ENST00000406659 USP6P35125 1406 aa32.1■■■□□ 2.73
DNMT3A-206ENST00000406659 CDK12Q9NYV4 1490 aaPredicted RBP32.09■■■□□ 2.73
DNMT3A-206ENST00000406659 MYH16Q9H6N6 1097 aa32.09■■■□□ 2.73
DNMT3A-206ENST00000406659 NRKQ7Z2Y5 1582 aa32.09■■■□□ 2.73
DNMT3A-206ENST00000406659 BCAR3O75815 825 aa32.06■■■□□ 2.72
DNMT3A-206ENST00000406659 NEFMP07197 916 aa32.06■■■□□ 2.72
DNMT3A-206ENST00000406659 RBM19Q9Y4C8 960 aaKnown RBP32.06■■■□□ 2.72
DNMT3A-206ENST00000406659 RRS1Q15050 365 aaKnown RBP32.05■■■□□ 2.72
DNMT3A-206ENST00000406659 PMFBP1Q8TBY8 1022 aa32.04■■■□□ 2.72
DNMT3A-206ENST00000406659 IL13P35225 146 aa32.04■■■□□ 2.72
DNMT3A-206ENST00000406659 NGDNQ8NEJ9 315 aaKnown RBP32.04■■■□□ 2.72
DNMT3A-206ENST00000406659 RSPH6AQ9H0K4 717 aa32.04■■■□□ 2.72
DNMT3A-206ENST00000406659 RIPK4P57078 832 aa32.03■■■□□ 2.72
DNMT3A-206ENST00000406659 TRIM35Q9UPQ4 493 aa32.03■■■□□ 2.72
DNMT3A-206ENST00000406659 PRKAR2BP31323 418 aa32.02■■■□□ 2.72
DNMT3A-206ENST00000406659 TTC21AQ8NDW8 1320 aa32.01■■■□□ 2.71
DNMT3A-206ENST00000406659 ANKARQ7Z5J8 1434 aa32.01■■■□□ 2.71
DNMT3A-206ENST00000406659 LRRC7Q96NW7 1537 aa32■■■□□ 2.71
DNMT3A-206ENST00000406659 OVOS2A0A0J9YW53 1432 aa31.99■■■□□ 2.71
DNMT3A-206ENST00000406659 OVOS2Q6IE36 1432 aa31.99■■■□□ 2.71
DNMT3A-206ENST00000406659 SSH2Q76I76 1423 aa31.99■■■□□ 2.71
DNMT3A-206ENST00000406659 CHD2O14647 1828 aaKnown RBP31.99■■■□□ 2.71
DNMT3A-206ENST00000406659 RGPD8O14715 1765 aaPredicted RBP31.98■■■□□ 2.71
DNMT3A-206ENST00000406659 IL16Q14005 1332 aa31.98■■■□□ 2.71
DNMT3A-206ENST00000406659 HMOX1P09601 288 aa31.97■■■□□ 2.71
DNMT3A-206ENST00000406659 RARSP54136 660 aaKnown RBP31.96■■■□□ 2.71
DNMT3A-206ENST00000406659 CANXP27824 592 aaKnown RBP31.94■■■□□ 2.7
DNMT3A-206ENST00000406659 FMN2Q9NZ56 1722 aa31.94■■■□□ 2.7
DNMT3A-206ENST00000406659 USP31Q70CQ4 1352 aa31.93■■■□□ 2.7
DNMT3A-206ENST00000406659 PDE3AQ14432 1141 aa31.92■■■□□ 2.7
DNMT3A-206ENST00000406659 NPHP4O75161 1426 aaPredicted RBP31.92■■■□□ 2.7
DNMT3A-206ENST00000406659 NFE2L2Q16236 605 aa31.91■■■□□ 2.7
DNMT3A-206ENST00000406659 FANCIQ9NVI1 1328 aa31.91■■■□□ 2.7
DNMT3A-206ENST00000406659 NALCNQ8IZF0 1738 aa31.91■■■□□ 2.7
DNMT3A-206ENST00000406659 CT47B1P0C2W7 299 aaPredicted RBP31.91■■■□□ 2.7
DNMT3A-206ENST00000406659 TSR2Q969E8 191 aaKnown RBP31.89■■■□□ 2.7
DNMT3A-206ENST00000406659 PHACTR3Q96KR7 559 aa31.89■■■□□ 2.7
DNMT3A-206ENST00000406659 FRAT1Q92837 279 aaPredicted RBP31.86■■■□□ 2.69
DNMT3A-206ENST00000406659 EIF4A2Q14240 407 aaKnown RBP31.86■■■□□ 2.69
DNMT3A-206ENST00000406659 EXOSC9Q06265 439 aaKnown RBP31.85■■■□□ 2.69
DNMT3A-206ENST00000406659 SOX12O15370 315 aa31.84■■■□□ 2.69
DNMT3A-206ENST00000406659 CALD1Q05682 793 aaKnown RBP31.83■■■□□ 2.69
DNMT3A-206ENST00000406659 RBM33Q96EV2 1170 aaKnown RBP31.81■■■□□ 2.68
DNMT3A-206ENST00000406659 BCL2L13Q9BXK5 485 aa31.8■■■□□ 2.68
DNMT3A-206ENST00000406659 PHF8Q9UPP1 1060 aa31.8■■■□□ 2.68
DNMT3A-206ENST00000406659 ADGRL3Q9HAR2 1447 aa31.79■■■□□ 2.68
DNMT3A-206ENST00000406659 NLRP6P59044 892 aa31.79■■■□□ 2.68
DNMT3A-206ENST00000406659 LMOD3Q0VAK6 560 aa31.79■■■□□ 2.68
DNMT3A-206ENST00000406659 HSP90AB2PQ58FF8 381 aa31.79■■■□□ 2.68
DNMT3A-206ENST00000406659 PANK1Q8TE04 598 aa31.79■■■□□ 2.68
DNMT3A-206ENST00000406659 PEAK1Q9H792 1746 aa31.79■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms