RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 NLRP13Q86W25 1043 aa28.43■■■□□ 2.14
TPM1-208ENST00000404484 NUDT16Q96DE0 195 aaKnown RBP28.43■■■□□ 2.14
TPM1-208ENST00000404484 PXDNQ92626 1479 aa28.42■■■□□ 2.14
TPM1-208ENST00000404484 KRT28Q7Z3Y7 464 aa28.41■■■□□ 2.14
TPM1-208ENST00000404484 PNPLA6Q8IY17 1366 aa28.41■■■□□ 2.14
TPM1-208ENST00000404484 PHF23Q9BUL5 403 aaPredicted RBP28.41■■■□□ 2.14
TPM1-208ENST00000404484 ATP7BP35670 1465 aa28.4■■■□□ 2.14
TPM1-208ENST00000404484 SHPRHQ149N8 1683 aa28.4■■■□□ 2.14
TPM1-208ENST00000404484 NUTM2BA6NNL0 878 aaPredicted RBP28.4■■■□□ 2.14
TPM1-208ENST00000404484 NUTM2EB1AL46 878 aaPredicted RBP28.4■■■□□ 2.14
TPM1-208ENST00000404484 NUTM2AQ8IVF1 878 aaPredicted RBP28.4■■■□□ 2.14
TPM1-208ENST00000404484 HDGFL2Q7Z4V5 671 aaPredicted RBP28.39■■■□□ 2.14
TPM1-208ENST00000404484 CGNL1Q0VF96 1302 aa28.39■■■□□ 2.13
TPM1-208ENST00000404484 NSD2O96028 1365 aa28.38■■■□□ 2.13
TPM1-208ENST00000404484 PSME1Q06323 249 aa28.38■■■□□ 2.13
TPM1-208ENST00000404484 CCDC184Q52MB2 194 aa28.38■■■□□ 2.13
TPM1-208ENST00000404484 A0A1W2PP64 1363 aa28.37■■■□□ 2.13
TPM1-208ENST00000404484 KIF1AQ12756 1690 aa28.37■■■□□ 2.13
TPM1-208ENST00000404484 LRP6O75581 1613 aa28.37■■■□□ 2.13
TPM1-208ENST00000404484 RGS17Q9UGC6 210 aaPredicted RBP28.37■■■□□ 2.13
TPM1-208ENST00000404484 ILDR2Q71H61 639 aa28.35■■■□□ 2.13
TPM1-208ENST00000404484 CCDC61Q9Y6R9 512 aa28.35■■■□□ 2.13
TPM1-208ENST00000404484 CABP1Q9NZU7 370 aa28.34■■■□□ 2.13
TPM1-208ENST00000404484 CD163L1Q9NR16 1453 aa28.34■■■□□ 2.13
TPM1-208ENST00000404484 PPIP5K1Q6PFW1 1433 aa28.34■■■□□ 2.13
TPM1-208ENST00000404484 SPATA31A3Q5VYP0 1347 aa28.33■■■□□ 2.13
TPM1-208ENST00000404484 NGDNQ8NEJ9 315 aaKnown RBP28.33■■■□□ 2.12
TPM1-208ENST00000404484 MEX3CQ5U5Q3 659 aaKnown RBP28.32■■■□□ 2.12
TPM1-208ENST00000404484 PLEKHG3A1L390 1219 aa28.28■■■□□ 2.12
TPM1-208ENST00000404484 TOPAZ1Q8N9V7 1692 aa28.28■■■□□ 2.12
TPM1-208ENST00000404484 PPP2R1AP30153 589 aa28.28■■■□□ 2.12
TPM1-208ENST00000404484 SBNO1A3KN83 1393 aa28.27■■■□□ 2.12
TPM1-208ENST00000404484 FAM9BQ8IZU0 186 aa28.27■■■□□ 2.12
TPM1-208ENST00000404484 CPSF1Q10570 1443 aaKnown RBP28.26■■■□□ 2.11
TPM1-208ENST00000404484 ITSN1Q15811 1721 aa28.26■■■□□ 2.11
TPM1-208ENST00000404484 ACEP12821 1306 aa28.25■■■□□ 2.11
TPM1-208ENST00000404484 ADAMTS2O95450 1211 aa28.25■■■□□ 2.11
TPM1-208ENST00000404484 MORC1Q86VD1 984 aa28.25■■■□□ 2.11
TPM1-208ENST00000404484 PNISRQ8TF01 805 aaKnown RBP28.25■■■□□ 2.11
TPM1-208ENST00000404484 LMOD2Q6P5Q4 547 aa28.24■■■□□ 2.11
TPM1-208ENST00000404484 ZNF692Q9BU19 519 aaPredicted RBP28.24■■■□□ 2.11
TPM1-208ENST00000404484 TNS3Q68CZ2 1445 aa28.23■■■□□ 2.11
TPM1-208ENST00000404484 EDC4Q6P2E9 1401 aaKnown RBP28.23■■■□□ 2.11
TPM1-208ENST00000404484 POLR3AO14802 1390 aaPredicted RBP28.22■■■□□ 2.11
TPM1-208ENST00000404484 POTEAQ6S8J7 498 aa28.22■■■□□ 2.11
TPM1-208ENST00000404484 COL22A1Q8NFW1 1626 aaPredicted RBP28.21■■■□□ 2.11
TPM1-208ENST00000404484 AKAP12Q02952 1782 aa28.21■■■□□ 2.11
TPM1-208ENST00000404484 C8orf37Q96NL8 207 aa28.21■■■□□ 2.11
TPM1-208ENST00000404484 MON2Q7Z3U7 1717 aa28.21■■■□□ 2.11
TPM1-208ENST00000404484 ANKRD26Q9UPS8 1709 aa28.21■■■□□ 2.11
TPM1-208ENST00000404484 PAK3O75914 559 aaPredicted RBP28.2■■■□□ 2.1
TPM1-208ENST00000404484 KIF20BQ96Q89 1820 aa28.19■■■□□ 2.1
TPM1-208ENST00000404484 PLEKHG5O94827 1062 aa28.19■■■□□ 2.1
TPM1-208ENST00000404484 CABLES1Q8TDN4 633 aa28.19■■■□□ 2.1
TPM1-208ENST00000404484 ARHGEF10O15013 1369 aa28.18■■■□□ 2.1
TPM1-208ENST00000404484 HNRNPUQ00839 825 aaKnown RBP eCLIP28.17■■■□□ 2.1
TPM1-208ENST00000404484 NGLY1Q96IV0 654 aa28.16■■■□□ 2.1
TPM1-208ENST00000404484 AFF2P51816 1311 aa28.16■■■□□ 2.1
TPM1-208ENST00000404484 TRPM3Q9HCF6 1732 aaPredicted RBP28.16■■■□□ 2.1
TPM1-208ENST00000404484 INSRP06213 1382 aa28.16■■■□□ 2.1
TPM1-208ENST00000404484 FYB1O15117 783 aa28.15■■■□□ 2.1
TPM1-208ENST00000404484 ZNF772Q68DY9 489 aaPredicted RBP28.15■■■□□ 2.1
TPM1-208ENST00000404484 GGNBP2Q9H3C7 697 aa28.11■■■□□ 2.09
TPM1-208ENST00000404484 HAP1P54257 671 aaPredicted RBP28.1■■■□□ 2.09
TPM1-208ENST00000404484 ALS2Q96Q42 1657 aa28.09■■■□□ 2.09
TPM1-208ENST00000404484 FNBP4Q8N3X1 1017 aaPredicted RBP28.09■■■□□ 2.09
TPM1-208ENST00000404484 USP6P35125 1406 aa28.09■■■□□ 2.09
TPM1-208ENST00000404484 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.08■■■□□ 2.09
TPM1-208ENST00000404484 NRKQ7Z2Y5 1582 aa28.08■■■□□ 2.09
TPM1-208ENST00000404484 WDR43Q15061 677 aaKnown RBP eCLIP28.07■■■□□ 2.08
TPM1-208ENST00000404484 NUTM2GQ5VZR2 741 aa28.07■■■□□ 2.08
TPM1-208ENST00000404484 ABTB2Q8N961 1025 aa28.07■■■□□ 2.08
TPM1-208ENST00000404484 TNNT2P45379 298 aaPredicted RBP28.06■■■□□ 2.08
TPM1-208ENST00000404484 CFAP53Q96M91 514 aa28.06■■■□□ 2.08
TPM1-208ENST00000404484 USP21Q9UK80 565 aa28.05■■■□□ 2.08
TPM1-208ENST00000404484 ZBED9Q6R2W3 1325 aa28.04■■■□□ 2.08
TPM1-208ENST00000404484 QTRT2Q9H974 415 aaKnown RBP28.04■■■□□ 2.08
TPM1-208ENST00000404484 TTC21BQ7Z4L5 1316 aa28.04■■■□□ 2.08
TPM1-208ENST00000404484 TTC21AQ8NDW8 1320 aa28.03■■■□□ 2.08
TPM1-208ENST00000404484 FAM83GA6ND36 823 aa28.01■■■□□ 2.07
TPM1-208ENST00000404484 COG3Q96JB2 828 aa28.01■■■□□ 2.07
TPM1-208ENST00000404484 BLMP54132 1417 aaPredicted RBP28.01■■■□□ 2.07
TPM1-208ENST00000404484 SSH2Q76I76 1423 aa28.01■■■□□ 2.07
TPM1-208ENST00000404484 MTHFSP49914 203 aa28■■■□□ 2.07
TPM1-208ENST00000404484 NME9Q86XW9 330 aa27.99■■■□□ 2.07
TPM1-208ENST00000404484 RXRBP28702 533 aa27.99■■■□□ 2.07
TPM1-208ENST00000404484 MARF1Q9Y4F3 1742 aaKnown RBP27.98■■■□□ 2.07
TPM1-208ENST00000404484 BCL9LQ86UU0 1499 aa27.98■■■□□ 2.07
TPM1-208ENST00000404484 SOCS7O14512 581 aa27.97■■■□□ 2.07
TPM1-208ENST00000404484 ABCA3Q99758 1704 aa27.97■■■□□ 2.07
TPM1-208ENST00000404484 AATKQ6ZMQ8 1374 aa27.95■■■□□ 2.07
TPM1-208ENST00000404484 NLRP6P59044 892 aa27.95■■■□□ 2.07
TPM1-208ENST00000404484 TRPC5Q9UL62 973 aaPredicted RBP27.95■■■□□ 2.07
TPM1-208ENST00000404484 SLIT2O94813 1529 aa27.95■■■□□ 2.06
TPM1-208ENST00000404484 UNC5CLQ8IV45 518 aa27.94■■■□□ 2.06
TPM1-208ENST00000404484 ADAMTS8Q9UP79 889 aa27.94■■■□□ 2.06
TPM1-208ENST00000404484 RBM6P78332 1123 aaKnown RBP27.94■■■□□ 2.06
TPM1-208ENST00000404484 USP19O94966 1318 aa27.93■■■□□ 2.06
TPM1-208ENST00000404484 OVOS2A0A0J9YW53 1432 aa27.93■■■□□ 2.06
TPM1-208ENST00000404484 OVOS2Q6IE36 1432 aa27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms