RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 LRRC59Q96AG4 307 aaKnown RBP40.68■■■■■ 4.1
USP42-202ENST00000404008 SHPRHQ149N8 1683 aa40.67■■■■■ 4.1
USP42-202ENST00000404008 TNS3Q68CZ2 1445 aa40.67■■■■■ 4.1
USP42-202ENST00000404008 SSH2Q76I76 1423 aa40.66■■■■■ 4.1
USP42-202ENST00000404008 BRD4O60885 1362 aaPredicted RBP40.66■■■■■ 4.1
USP42-202ENST00000404008 SPATA31A3Q5VYP0 1347 aa40.64■■■■■ 4.1
USP42-202ENST00000404008 COL22A1Q8NFW1 1626 aaPredicted RBP40.6■■■■■ 4.09
USP42-202ENST00000404008 PAK3O75914 559 aaPredicted RBP40.6■■■■■ 4.09
USP42-202ENST00000404008 EDC4Q6P2E9 1401 aaKnown RBP40.6■■■■■ 4.09
USP42-202ENST00000404008 JCADQ9P266 1359 aa40.59■■■■■ 4.09
USP42-202ENST00000404008 PNPLA6Q8IY17 1366 aa40.58■■■■■ 4.09
USP42-202ENST00000404008 PIK3C2AO00443 1686 aa40.57■■■■■ 4.09
USP42-202ENST00000404008 ARHGEF10O15013 1369 aa40.56■■■■■ 4.08
USP42-202ENST00000404008 TTC21BQ7Z4L5 1316 aa40.55■■■■■ 4.08
USP42-202ENST00000404008 TTC21AQ8NDW8 1320 aa40.52■■■■■ 4.08
USP42-202ENST00000404008 LMOD2Q6P5Q4 547 aa40.51■■■■■ 4.08
USP42-202ENST00000404008 CARD14Q9BXL6 1004 aa40.51■■■■■ 4.08
USP42-202ENST00000404008 PANK3Q9H999 370 aa40.51■■■■■ 4.08
USP42-202ENST00000404008 CRYBG1Q9Y4K1 1723 aa40.49■■■■■ 4.07
USP42-202ENST00000404008 MED1Q15648 1581 aaPredicted RBP40.49■■■■■ 4.07
USP42-202ENST00000404008 NSD3Q9BZ95 1437 aa40.49■■■■■ 4.07
USP42-202ENST00000404008 ABCA3Q99758 1704 aa40.49■■■■■ 4.07
USP42-202ENST00000404008 MARF1Q9Y4F3 1742 aaKnown RBP40.48■■■■■ 4.07
USP42-202ENST00000404008 KIF20BQ96Q89 1820 aa40.48■■■■■ 4.07
USP42-202ENST00000404008 SUGP2Q8IX01 1082 aaKnown RBP eCLIP40.48■■■■■ 4.07
USP42-202ENST00000404008 ABTB2Q8N961 1025 aa40.48■■■■■ 4.07
USP42-202ENST00000404008 USP54Q70EL1 1684 aa40.47■■■■■ 4.07
USP42-202ENST00000404008 ZNF316A6NFI3 1004 aaPredicted RBP40.43■■■■■ 4.06
USP42-202ENST00000404008 PHRF1Q9P1Y6 1649 aaKnown RBP40.42■■■■■ 4.06
USP42-202ENST00000404008 SPATA31A6Q5VVP1 1343 aa40.41■■■■■ 4.06
USP42-202ENST00000404008 NUTM2GQ5VZR2 741 aa40.41■■■■■ 4.06
USP42-202ENST00000404008 NME9Q86XW9 330 aa40.39■■■■■ 4.06
USP42-202ENST00000404008 USP31Q70CQ4 1352 aa40.37■■■■■ 4.05
USP42-202ENST00000404008 NLRP6P59044 892 aa40.36■■■■■ 4.05
USP42-202ENST00000404008 NLRP13Q86W25 1043 aa40.35■■■■■ 4.05
USP42-202ENST00000404008 USP19O94966 1318 aa40.35■■■■■ 4.05
USP42-202ENST00000404008 CABLES1Q8TDN4 633 aa40.35■■■■■ 4.05
USP42-202ENST00000404008 SLIT3O75094 1523 aa40.34■■■■■ 4.05
USP42-202ENST00000404008 ZRANB1Q9UGI0 708 aa40.34■■■■■ 4.05
USP42-202ENST00000404008 LRP6O75581 1613 aa40.34■■■■■ 4.05
USP42-202ENST00000404008 OVOS2A0A0J9YW53 1432 aa40.33■■■■■ 4.05
USP42-202ENST00000404008 OVOS2Q6IE36 1432 aa40.33■■■■■ 4.05
USP42-202ENST00000404008 FYB1O15117 783 aa40.33■■■■■ 4.05
USP42-202ENST00000404008 PLEKHG5O94827 1062 aa40.33■■■■■ 4.05
USP42-202ENST00000404008 CGNL1Q0VF96 1302 aa40.32■■■■■ 4.05
USP42-202ENST00000404008 ANKRD26Q9UPS8 1709 aa40.32■■■■■ 4.05
USP42-202ENST00000404008 PER1O15534 1290 aaPredicted RBP40.31■■■■■ 4.04
USP42-202ENST00000404008 NUTM2BA6NNL0 878 aaPredicted RBP40.29■■■■■ 4.04
USP42-202ENST00000404008 NUTM2EB1AL46 878 aaPredicted RBP40.29■■■■■ 4.04
USP42-202ENST00000404008 NUTM2AQ8IVF1 878 aaPredicted RBP40.29■■■■■ 4.04
USP42-202ENST00000404008 KNSTRNQ9Y448 316 aa40.29■■■■■ 4.04
USP42-202ENST00000404008 GGNBP2Q9H3C7 697 aa40.26■■■■■ 4.04
USP42-202ENST00000404008 HAP1P54257 671 aaPredicted RBP40.24■■■■■ 4.03
USP42-202ENST00000404008 DDX10Q13206 875 aaKnown RBP40.24■■■■■ 4.03
USP42-202ENST00000404008 COG3Q96JB2 828 aa40.23■■■■■ 4.03
USP42-202ENST00000404008 NSD2O96028 1365 aa40.22■■■■■ 4.03
USP42-202ENST00000404008 NFAT5O94916 1531 aa40.21■■■■■ 4.03
USP42-202ENST00000404008 GCP02774 474 aa40.21■■■■■ 4.03
USP42-202ENST00000404008 AMER1Q5JTC6 1135 aaPredicted RBP40.21■■■■■ 4.03
USP42-202ENST00000404008 ADAMTS2O95450 1211 aa40.18■■■■■ 4.02
USP42-202ENST00000404008 KCNH5Q8NCM2 988 aa40.17■■■■■ 4.02
USP42-202ENST00000404008 LTN1O94822 1766 aa40.14■■■■■ 4.02
USP42-202ENST00000404008 NPC1L1Q9UHC9 1359 aa40.14■■■■■ 4.02
USP42-202ENST00000404008 SOX12O15370 315 aa40.12■■■■■ 4.01
USP42-202ENST00000404008 CPDO75976 1380 aa40.12■■■■■ 4.01
USP42-202ENST00000404008 MEX3CQ5U5Q3 659 aaKnown RBP40.11■■■■■ 4.01
USP42-202ENST00000404008 KIAA0232Q92628 1395 aa40.11■■■■■ 4.01
USP42-202ENST00000404008 COL14A1Q05707 1796 aaKnown RBP40.11■■■■■ 4.01
USP42-202ENST00000404008 ZC3H6P61129 1189 aaKnown RBP40.1■■■■■ 4.01
USP42-202ENST00000404008 PLCH1Q4KWH8 1693 aa40.09■■■■■ 4.01
USP42-202ENST00000404008 CC2D1BQ5T0F9 858 aaKnown RBP40.05■■■■■ 4
USP42-202ENST00000404008 C8orf37Q96NL8 207 aa40.05■■■■■ 4
USP42-202ENST00000404008 LMO7Q8WWI1 1683 aa40.04■■■■■ 4
USP42-202ENST00000404008 PRDM11Q9NQV5 511 aa40.04■■■■■ 4
USP42-202ENST00000404008 COL18A1P39060 1754 aa40.04■■■■■ 4
USP42-202ENST00000404008 NWD2Q9ULI1 1742 aa40.03■■■■■ 4
USP42-202ENST00000404008 FAM83GA6ND36 823 aa40.03■■■■■ 4
USP42-202ENST00000404008 MORC1Q86VD1 984 aa40.03■■■■■ 4
USP42-202ENST00000404008 ARHGEF25Q86VW2 580 aa40.03■■■■■ 4
USP42-202ENST00000404008 MAP2P11137 1827 aaKnown RBP40.02■■■■■ 4
USP42-202ENST00000404008 FBLN1P23142 703 aa40.01■■■■■ 4
USP42-202ENST00000404008 ABCC6O95255 1503 aa40■■■■□ 3.99
USP42-202ENST00000404008 CHRNA2Q15822 529 aa39.99■■■■□ 3.99
USP42-202ENST00000404008 NGLY1Q96IV0 654 aa39.99■■■■□ 3.99
USP42-202ENST00000404008 AATKQ6ZMQ8 1374 aa39.99■■■■□ 3.99
USP42-202ENST00000404008 SLIT2O94813 1529 aa39.99■■■■□ 3.99
USP42-202ENST00000404008 RGPD5Q99666 1765 aa39.97■■■■□ 3.99
USP42-202ENST00000404008 ZBTB7CA1YPR0 619 aa39.97■■■■□ 3.99
USP42-202ENST00000404008 CNGB1Q14028 1251 aaPredicted RBP39.97■■■■□ 3.99
USP42-202ENST00000404008 NRAPQ86VF7 1730 aa39.96■■■■□ 3.99
USP42-202ENST00000404008 TNNT2P45379 298 aaPredicted RBP39.96■■■■□ 3.99
USP42-202ENST00000404008 FNBP4Q8N3X1 1017 aaPredicted RBP39.96■■■■□ 3.99
USP42-202ENST00000404008 TNKS1BP1Q9C0C2 1729 aaKnown RBP39.95■■■■□ 3.99
USP42-202ENST00000404008 MAP3K19Q56UN5 1328 aa39.95■■■■□ 3.99
USP42-202ENST00000404008 PEAK1Q9H792 1746 aa39.94■■■■□ 3.98
USP42-202ENST00000404008 RRS1Q15050 365 aaKnown RBP39.94■■■■□ 3.98
USP42-202ENST00000404008 CAMTA1Q9Y6Y1 1673 aa39.94■■■■□ 3.98
USP42-202ENST00000404008 AFF2P51816 1311 aa39.93■■■■□ 3.98
USP42-202ENST00000404008 BCL9LQ86UU0 1499 aa39.9■■■■□ 3.98
USP42-202ENST00000404008 BTG4Q9NY30 223 aa39.9■■■■□ 3.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms