RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SLC24A1O60721 1099 aa26.38■■□□□ 1.81
CTCF-202ENST00000401394 ATAD2Q6PL18 1390 aa26.38■■□□□ 1.81
CTCF-202ENST00000401394 PPRC1Q5VV67 1664 aaKnown RBP26.38■■□□□ 1.81
CTCF-202ENST00000401394 NPATQ14207 1427 aa26.38■■□□□ 1.81
CTCF-202ENST00000401394 EVC2Q86UK5 1308 aa26.38■■□□□ 1.81
CTCF-202ENST00000401394 FYB1O15117 783 aa26.37■■□□□ 1.81
CTCF-202ENST00000401394 ASXL2Q76L83 1435 aa26.37■■□□□ 1.81
CTCF-202ENST00000401394 KIAA1210Q9ULL0 1709 aa26.37■■□□□ 1.81
CTCF-202ENST00000401394 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.37■■□□□ 1.81
CTCF-202ENST00000401394 KIF2CQ99661 725 aa26.37■■□□□ 1.81
CTCF-202ENST00000401394 GRPEL1Q9HAV7 217 aa26.36■■□□□ 1.81
CTCF-202ENST00000401394 KIF1BO60333 1816 aa26.36■■□□□ 1.81
CTCF-202ENST00000401394 QRICH2Q9H0J4 1663 aa26.36■■□□□ 1.81
CTCF-202ENST00000401394 HSP90AB1P08238 724 aaKnown RBP26.35■■□□□ 1.81
CTCF-202ENST00000401394 CHD1LQ86WJ1 897 aa26.35■■□□□ 1.81
CTCF-202ENST00000401394 NRXN1Q9ULB1 1477 aa26.35■■□□□ 1.81
CTCF-202ENST00000401394 NUCB1Q02818 461 aa26.34■■□□□ 1.81
CTCF-202ENST00000401394 PHACTR3Q96KR7 559 aa26.34■■□□□ 1.81
CTCF-202ENST00000401394 ADGRB1O14514 1584 aa26.34■■□□□ 1.81
CTCF-202ENST00000401394 AAMPQ13685 434 aa26.34■■□□□ 1.81
CTCF-202ENST00000401394 PNNQ9H307 717 aaKnown RBP26.34■■□□□ 1.81
CTCF-202ENST00000401394 ANKRD36BQ8N2N9 1353 aa26.33■■□□□ 1.81
CTCF-202ENST00000401394 EFCAB6Q5THR3 1501 aa26.33■■□□□ 1.8
CTCF-202ENST00000401394 TULP4Q9NRJ4 1543 aa26.33■■□□□ 1.8
CTCF-202ENST00000401394 NPM1P06748 294 aaKnown RBP eCLIP26.32■■□□□ 1.8
CTCF-202ENST00000401394 HSP90AA1P07900 732 aaKnown RBP26.31■■□□□ 1.8
CTCF-202ENST00000401394 DDIT3P35638 169 aa26.31■■□□□ 1.8
CTCF-202ENST00000401394 INO80Q9ULG1 1556 aaPredicted RBP26.3■■□□□ 1.8
CTCF-202ENST00000401394 SSFA2P28290 1259 aa26.3■■□□□ 1.8
CTCF-202ENST00000401394 PRKAR2BP31323 418 aa26.3■■□□□ 1.8
CTCF-202ENST00000401394 SIRT2Q8IXJ6 389 aa26.3■■□□□ 1.8
CTCF-202ENST00000401394 CHAMP1Q96JM3 812 aa26.29■■□□□ 1.8
CTCF-202ENST00000401394 RAPGEF3O95398 923 aa26.29■■□□□ 1.8
CTCF-202ENST00000401394 PRAM1Q96QH2 718 aa26.28■■□□□ 1.8
CTCF-202ENST00000401394 TBC1D9Q6ZT07 1266 aa26.28■■□□□ 1.8
CTCF-202ENST00000401394 GAS2L2Q8NHY3 880 aa26.28■■□□□ 1.8
CTCF-202ENST00000401394 IFT172Q9UG01 1749 aa26.27■■□□□ 1.8
CTCF-202ENST00000401394 DIAPH1O60610 1272 aaKnown RBP26.27■■□□□ 1.8
CTCF-202ENST00000401394 APBB1O00213 710 aa26.27■■□□□ 1.8
CTCF-202ENST00000401394 MRE11P49959 708 aa26.27■■□□□ 1.8
CTCF-202ENST00000401394 IDI1Q13907 227 aa26.27■■□□□ 1.8
CTCF-202ENST00000401394 RBM25P49756 843 aaKnown RBP26.26■■□□□ 1.79
CTCF-202ENST00000401394 C16orf71Q8IYS4 520 aaPredicted RBP26.26■■□□□ 1.79
CTCF-202ENST00000401394 CABP1Q9NZU7 370 aa26.26■■□□□ 1.79
CTCF-202ENST00000401394 ADGRB3O60242 1522 aa26.26■■□□□ 1.79
CTCF-202ENST00000401394 MYO3AQ8NEV4 1616 aa26.26■■□□□ 1.79
CTCF-202ENST00000401394 ZBTB7BO15156 539 aaPredicted RBP26.25■■□□□ 1.79
CTCF-202ENST00000401394 DCTN1Q14203 1278 aa26.25■■□□□ 1.79
CTCF-202ENST00000401394 ZRANB1Q9UGI0 708 aa26.25■■□□□ 1.79
CTCF-202ENST00000401394 PPIP5K1Q6PFW1 1433 aa26.24■■□□□ 1.79
CTCF-202ENST00000401394 FAM83GA6ND36 823 aa26.24■■□□□ 1.79
CTCF-202ENST00000401394 CLCN1P35523 988 aa26.24■■□□□ 1.79
CTCF-202ENST00000401394 PKP1Q13835 747 aa26.22■■□□□ 1.79
CTCF-202ENST00000401394 ZMYM3Q14202 1370 aa26.22■■□□□ 1.79
CTCF-202ENST00000401394 DDX11L8A8MPP1 907 aa26.22■■□□□ 1.79
CTCF-202ENST00000401394 OTUD7AQ8TE49 926 aaPredicted RBP26.22■■□□□ 1.79
CTCF-202ENST00000401394 ESPNB1AK53 854 aa26.21■■□□□ 1.79
CTCF-202ENST00000401394 RAB3GAP1Q15042 981 aa26.2■■□□□ 1.78
CTCF-202ENST00000401394 KRT24Q2M2I5 525 aa26.2■■□□□ 1.78
CTCF-202ENST00000401394 ADGRB2O60241 1585 aa26.2■■□□□ 1.78
CTCF-202ENST00000401394 KIDINS220Q9ULH0 1771 aa26.19■■□□□ 1.78
CTCF-202ENST00000401394 IPO8O15397 1037 aaKnown RBP26.19■■□□□ 1.78
CTCF-202ENST00000401394 EMILIN1Q9Y6C2 1016 aa26.19■■□□□ 1.78
CTCF-202ENST00000401394 VAMP4O75379 141 aa26.19■■□□□ 1.78
CTCF-202ENST00000401394 ABCC11Q96J66 1382 aa26.19■■□□□ 1.78
CTCF-202ENST00000401394 ZC3H13Q5T200 1668 aaKnown RBP26.18■■□□□ 1.78
CTCF-202ENST00000401394 VGFO15240 615 aaPredicted RBP26.18■■□□□ 1.78
CTCF-202ENST00000401394 KIF16BQ96L93 1317 aa26.18■■□□□ 1.78
CTCF-202ENST00000401394 CT47B1P0C2W7 299 aaPredicted RBP26.18■■□□□ 1.78
CTCF-202ENST00000401394 GSPT1P15170 499 aaKnown RBP26.18■■□□□ 1.78
CTCF-202ENST00000401394 GLI2P10070 1586 aa26.18■■□□□ 1.78
CTCF-202ENST00000401394 NCOA3Q9Y6Q9 1424 aa26.17■■□□□ 1.78
CTCF-202ENST00000401394 C8orf58Q8NAV2 365 aa26.17■■□□□ 1.78
CTCF-202ENST00000401394 COL3A1P02461 1466 aaPredicted RBP26.17■■□□□ 1.78
CTCF-202ENST00000401394 BMP2KLQ5H9B9 411 aa26.17■■□□□ 1.78
CTCF-202ENST00000401394 WAPLQ7Z5K2 1190 aa26.17■■□□□ 1.78
CTCF-202ENST00000401394 AK9Q5TCS8 1911 aa26.17■■□□□ 1.78
CTCF-202ENST00000401394 SNX21Q969T3 373 aa26.16■■□□□ 1.78
CTCF-202ENST00000401394 SETBP1Q9Y6X0 1596 aa26.16■■□□□ 1.78
CTCF-202ENST00000401394 MRPL50Q8N5N7 158 aaKnown RBP26.16■■□□□ 1.78
CTCF-202ENST00000401394 NCKAP5LQ9HCH0 1330 aa26.16■■□□□ 1.78
CTCF-202ENST00000401394 CDK19Q9BWU1 502 aa26.16■■□□□ 1.78
CTCF-202ENST00000401394 NCLP19338 710 aaKnown RBP26.15■■□□□ 1.78
CTCF-202ENST00000401394 MBIPQ9NS73 344 aa26.15■■□□□ 1.78
CTCF-202ENST00000401394 POLKQ9UBT6 870 aa26.15■■□□□ 1.78
CTCF-202ENST00000401394 K7ELQ4 463 aaPredicted RBP26.14■■□□□ 1.78
CTCF-202ENST00000401394 FOXD4L5Q5VV16 416 aaPredicted RBP26.14■■□□□ 1.78
CTCF-202ENST00000401394 FOXD4L4Q8WXT5 416 aaPredicted RBP26.14■■□□□ 1.78
CTCF-202ENST00000401394 PPLO60437 1756 aa26.14■■□□□ 1.77
CTCF-202ENST00000401394 CAMSAP1Q5T5Y3 1602 aa26.13■■□□□ 1.77
CTCF-202ENST00000401394 SMARCA5O60264 1052 aaPredicted RBP26.13■■□□□ 1.77
CTCF-202ENST00000401394 FBXO31Q5XUX0 539 aaPredicted RBP26.13■■□□□ 1.77
CTCF-202ENST00000401394 TRIM44Q96DX7 344 aaPredicted RBP26.12■■□□□ 1.77
CTCF-202ENST00000401394 TERF2IPQ9NYB0 399 aa26.11■■□□□ 1.77
CTCF-202ENST00000401394 GBP4Q96PP9 640 aa26.11■■□□□ 1.77
CTCF-202ENST00000401394 RRS1Q15050 365 aaKnown RBP26.1■■□□□ 1.77
CTCF-202ENST00000401394 CD163L1Q9NR16 1453 aa26.1■■□□□ 1.77
CTCF-202ENST00000401394 NSD2O96028 1365 aa26.1■■□□□ 1.77
CTCF-202ENST00000401394 MCTP1Q6DN14 999 aa26.1■■□□□ 1.77
CTCF-202ENST00000401394 DDX49Q9Y6V7 483 aaKnown RBP26.1■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms