RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 DDX49Q9Y6V7 483 aaKnown RBP22.88■■□□□ 1.25
USP48-204ENST00000400301 NPC1L1Q9UHC9 1359 aa22.87■■□□□ 1.25
USP48-204ENST00000400301 BLMP54132 1417 aaPredicted RBP22.87■■□□□ 1.25
USP48-204ENST00000400301 ZNF428Q96B54 188 aa22.87■■□□□ 1.25
USP48-204ENST00000400301 CHD1LQ86WJ1 897 aa22.87■■□□□ 1.25
USP48-204ENST00000400301 NME9Q86XW9 330 aa22.87■■□□□ 1.25
USP48-204ENST00000400301 PCDHB15Q9Y5E8 787 aa22.87■■□□□ 1.25
USP48-204ENST00000400301 EMILIN1Q9Y6C2 1016 aa22.87■■□□□ 1.25
USP48-204ENST00000400301 ANKRD36BQ8N2N9 1353 aa22.86■■□□□ 1.25
USP48-204ENST00000400301 BRPF3Q9ULD4 1205 aa22.86■■□□□ 1.25
USP48-204ENST00000400301 FYB1O15117 783 aa22.85■■□□□ 1.25
USP48-204ENST00000400301 INTS3Q68E01 1043 aaKnown RBP22.85■■□□□ 1.25
USP48-204ENST00000400301 FBLN1P23142 703 aa22.85■■□□□ 1.25
USP48-204ENST00000400301 TEFQ10587 303 aa22.85■■□□□ 1.25
USP48-204ENST00000400301 CSB-PGBD3P0DP91 1061 aa22.85■■□□□ 1.25
USP48-204ENST00000400301 PLA2R1Q13018 1463 aa22.85■■□□□ 1.25
USP48-204ENST00000400301 SLC26A8Q96RN1 970 aa22.84■■□□□ 1.25
USP48-204ENST00000400301 MSNP26038 577 aaKnown RBP22.84■■□□□ 1.25
USP48-204ENST00000400301 DNTTIP2Q5QJE6 756 aaKnown RBP22.84■■□□□ 1.25
USP48-204ENST00000400301 IL27Q8NEV9 243 aa22.84■■□□□ 1.25
USP48-204ENST00000400301 TNNQ9UQP3 1299 aa22.84■■□□□ 1.25
USP48-204ENST00000400301 DMRT2Q9Y5R5 561 aa22.84■■□□□ 1.25
USP48-204ENST00000400301 ZMYM4Q5VZL5 1548 aa22.84■■□□□ 1.25
USP48-204ENST00000400301 INSRP06213 1382 aa22.83■■□□□ 1.25
USP48-204ENST00000400301 C8orf34Q49A92 452 aa22.83■■□□□ 1.25
USP48-204ENST00000400301 SKOR2Q2VWA4 1001 aaPredicted RBP22.82■■□□□ 1.24
USP48-204ENST00000400301 ATP7AQ04656 1500 aa22.82■■□□□ 1.24
USP48-204ENST00000400301 DCTN1Q14203 1278 aa22.82■■□□□ 1.24
USP48-204ENST00000400301 MAGI2Q86UL8 1455 aa22.81■■□□□ 1.24
USP48-204ENST00000400301 HDAC5Q9UQL6 1122 aa22.81■■□□□ 1.24
USP48-204ENST00000400301 CCDC27Q2M243 656 aa22.81■■□□□ 1.24
USP48-204ENST00000400301 SLC4A2P04920 1241 aa22.81■■□□□ 1.24
USP48-204ENST00000400301 RLBP1P12271 317 aa22.81■■□□□ 1.24
USP48-204ENST00000400301 ALDH1L2Q3SY69 923 aa22.81■■□□□ 1.24
USP48-204ENST00000400301 BCORL1Q5H9F3 1711 aa22.8■■□□□ 1.24
USP48-204ENST00000400301 TTC37Q6PGP7 1564 aa22.8■■□□□ 1.24
USP48-204ENST00000400301 CDC42BPAQ5VT25 1732 aa22.79■■□□□ 1.24
USP48-204ENST00000400301 NAP1L2Q9ULW6 460 aaPredicted RBP22.79■■□□□ 1.24
USP48-204ENST00000400301 KDM5DQ9BY66 1539 aa22.79■■□□□ 1.24
USP48-204ENST00000400301 GOLGA6L4A6NEF3 574 aa22.79■■□□□ 1.24
USP48-204ENST00000400301 WASLO00401 505 aaPredicted RBP22.78■■□□□ 1.24
USP48-204ENST00000400301 GPATCH3Q96I76 525 aa22.78■■□□□ 1.24
USP48-204ENST00000400301 TRAK2O60296 914 aa22.78■■□□□ 1.24
USP48-204ENST00000400301 ANO2Q9NQ90 1003 aa22.78■■□□□ 1.24
USP48-204ENST00000400301 GAS2L2Q8NHY3 880 aa22.77■■□□□ 1.24
USP48-204ENST00000400301 ATP10AO60312 1499 aa22.77■■□□□ 1.24
USP48-204ENST00000400301 PUS7Q96PZ0 661 aaKnown RBP22.77■■□□□ 1.24
USP48-204ENST00000400301 C1orf141Q5JVX7 400 aa22.76■■□□□ 1.23
USP48-204ENST00000400301 PREX2Q70Z35 1606 aa22.76■■□□□ 1.23
USP48-204ENST00000400301 IFT57Q9NWB7 429 aa22.76■■□□□ 1.23
USP48-204ENST00000400301 MYO5CQ9NQX4 1742 aa22.76■■□□□ 1.23
USP48-204ENST00000400301 PSME1Q06323 249 aa22.76■■□□□ 1.23
USP48-204ENST00000400301 KDM2BQ8NHM5 1336 aa22.75■■□□□ 1.23
USP48-204ENST00000400301 ADCY10Q96PN6 1610 aa22.75■■□□□ 1.23
USP48-204ENST00000400301 FOXD4L6Q3SYB3 417 aaPredicted RBP22.75■■□□□ 1.23
USP48-204ENST00000400301 FOXD4L3Q6VB84 417 aaPredicted RBP22.75■■□□□ 1.23
USP48-204ENST00000400301 IL16Q14005 1332 aa22.74■■□□□ 1.23
USP48-204ENST00000400301 ABTB2Q8N961 1025 aa22.74■■□□□ 1.23
USP48-204ENST00000400301 SYAP1Q96A49 352 aaPredicted RBP22.74■■□□□ 1.23
USP48-204ENST00000400301 MCM10Q7L590 875 aa22.73■■□□□ 1.23
USP48-204ENST00000400301 TBC1D2Q9BYX2 928 aa22.73■■□□□ 1.23
USP48-204ENST00000400301 C9orf78Q9NZ63 289 aaPredicted RBP22.72■■□□□ 1.23
USP48-204ENST00000400301 TAOK2Q9UL54 1235 aa22.72■■□□□ 1.23
USP48-204ENST00000400301 GNAI3P08754 354 aa22.72■■□□□ 1.23
USP48-204ENST00000400301 CCDC30Q5VVM6 783 aa22.72■■□□□ 1.23
USP48-204ENST00000400301 NUCB2P80303 420 aa22.71■■□□□ 1.23
USP48-204ENST00000400301 UBTFL1P0CB47 393 aaPredicted RBP22.71■■□□□ 1.23
USP48-204ENST00000400301 ZRSR1Q15695 479 aaKnown RBP22.71■■□□□ 1.23
USP48-204ENST00000400301 A0A1W2PP64 1363 aa22.71■■□□□ 1.23
USP48-204ENST00000400301 PTPRTO14522 1441 aa22.7■■□□□ 1.22
USP48-204ENST00000400301 MCM4P33991 863 aa22.7■■□□□ 1.22
USP48-204ENST00000400301 MIS18AQ9NYP9 233 aa22.7■■□□□ 1.22
USP48-204ENST00000400301 TBC1D32Q96NH3 1257 aa22.69■■□□□ 1.22
USP48-204ENST00000400301 CHMP3Q9Y3E7 222 aa22.69■■□□□ 1.22
USP48-204ENST00000400301 GNAI2P04899 355 aa22.68■■□□□ 1.22
USP48-204ENST00000400301 ZNF330Q9Y3S2 320 aaPredicted RBP22.68■■□□□ 1.22
USP48-204ENST00000400301 RABEP1Q15276 862 aa22.68■■□□□ 1.22
USP48-204ENST00000400301 MCTP1Q6DN14 999 aa22.68■■□□□ 1.22
USP48-204ENST00000400301 FAM83GA6ND36 823 aa22.68■■□□□ 1.22
USP48-204ENST00000400301 DIAPH3Q9NSV4 1193 aa22.68■■□□□ 1.22
USP48-204ENST00000400301 HDAC1Q13547 482 aaPredicted RBP22.67■■□□□ 1.22
USP48-204ENST00000400301 MBIPQ9NS73 344 aa22.67■■□□□ 1.22
USP48-204ENST00000400301 POLKQ9UBT6 870 aa22.67■■□□□ 1.22
USP48-204ENST00000400301 PRDM15P57071 1507 aaPredicted RBP22.67■■□□□ 1.22
USP48-204ENST00000400301 RPAP2Q8IXW5 612 aaPredicted RBP22.66■■□□□ 1.22
USP48-204ENST00000400301 CFAP65Q6ZU64 1925 aaKnown RBP22.66■■□□□ 1.22
USP48-204ENST00000400301 CCT4P50991 539 aaKnown RBP22.66■■□□□ 1.22
USP48-204ENST00000400301 K7ELQ4 463 aaPredicted RBP22.65■■□□□ 1.22
USP48-204ENST00000400301 SEC24BO95487 1268 aa22.65■■□□□ 1.22
USP48-204ENST00000400301 ABCC1P33527 1531 aa22.65■■□□□ 1.22
USP48-204ENST00000400301 MRE11P49959 708 aa22.65■■□□□ 1.22
USP48-204ENST00000400301 SURF6O75683 361 aaKnown RBP22.65■■□□□ 1.22
USP48-204ENST00000400301 THEMISQ8N1K5 641 aaPredicted RBP22.65■■□□□ 1.22
USP48-204ENST00000400301 HDGFL1Q5TGJ6 251 aa22.64■■□□□ 1.21
USP48-204ENST00000400301 PPP6R1Q9UPN7 881 aa22.64■■□□□ 1.21
USP48-204ENST00000400301 NEK4P51957 841 aa22.63■■□□□ 1.21
USP48-204ENST00000400301 ZNF521Q96K83 1311 aa22.63■■□□□ 1.21
USP48-204ENST00000400301 ZRANB1Q9UGI0 708 aa22.63■■□□□ 1.21
USP48-204ENST00000400301 NPATQ14207 1427 aa22.63■■□□□ 1.21
USP48-204ENST00000400301 UHRF1BP1LA0JNW5 1464 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms