RNA–Protein interactions for RNA: ENST00000400000.6

VAPA-202, Transcript of VAMP associated protein A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPA, Length 6,815 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-202ENST00000400000 FKBP4Q02790 459 aaKnown RBP eCLIP16.5■□□□□ 0.23
VAPA-202ENST00000400000 GPRASP1Q5JY77 1395 aa16.5■□□□□ 0.23
VAPA-202ENST00000400000 MATR3P43243 847 aaKnown RBP eCLIP16.5■□□□□ 0.232e-6■■■■□ 22.8
VAPA-202ENST00000400000 FAM177A1Q8N128 213 aaPredicted RBP16.49■□□□□ 0.23
VAPA-202ENST00000400000 ANKRD62A6NC57 917 aa16.49■□□□□ 0.23
VAPA-202ENST00000400000 CAVIN1Q6NZI2 390 aaKnown RBP16.49■□□□□ 0.23
VAPA-202ENST00000400000 PLCD4Q9BRC7 762 aa16.49■□□□□ 0.23
VAPA-202ENST00000400000 DHX57Q6P158 1386 aaKnown RBP16.49■□□□□ 0.23
VAPA-202ENST00000400000 ADAMTS8Q9UP79 889 aa16.49■□□□□ 0.23
VAPA-202ENST00000400000 ROCK1Q13464 1354 aa16.49■□□□□ 0.23
VAPA-202ENST00000400000 XBP1P17861 261 aa16.49■□□□□ 0.23
VAPA-202ENST00000400000 PRKAR2BP31323 418 aa16.48■□□□□ 0.23
VAPA-202ENST00000400000 AK7Q96M32 723 aa16.48■□□□□ 0.23
VAPA-202ENST00000400000 ZC3H6P61129 1189 aaKnown RBP16.48■□□□□ 0.23
VAPA-202ENST00000400000 CADPSQ9ULU8 1353 aa16.48■□□□□ 0.23
VAPA-202ENST00000400000 FIBPO43427 364 aa16.48■□□□□ 0.23
VAPA-202ENST00000400000 ADAMTS2O95450 1211 aa16.48■□□□□ 0.23
VAPA-202ENST00000400000 SEPT11Q9NVA2 429 aaKnown RBP16.48■□□□□ 0.23
VAPA-202ENST00000400000 NOB1Q9ULX3 412 aaKnown RBP16.48■□□□□ 0.23
VAPA-202ENST00000400000 NINLQ9Y2I6 1382 aa16.47■□□□□ 0.23
VAPA-202ENST00000400000 CFAP70Q5T0N1 1121 aa16.47■□□□□ 0.23
VAPA-202ENST00000400000 CHMP5Q9NZZ3 219 aa16.47■□□□□ 0.23
VAPA-202ENST00000400000 FANCD2Q9BXW9 1451 aa16.47■□□□□ 0.23
VAPA-202ENST00000400000 TANGO6Q9C0B7 1094 aa16.47■□□□□ 0.23
VAPA-202ENST00000400000 SSBP05455 408 aaKnown RBP eCLIP16.46■□□□□ 0.23
VAPA-202ENST00000400000 NEK4P51957 841 aa16.46■□□□□ 0.23
VAPA-202ENST00000400000 TRIM5Q9C035 493 aa16.46■□□□□ 0.23
VAPA-202ENST00000400000 PRPF40AO75400 957 aaKnown RBP16.46■□□□□ 0.23
VAPA-202ENST00000400000 EXOSC9Q06265 439 aaKnown RBP16.46■□□□□ 0.23
VAPA-202ENST00000400000 MPHOSPH10O00566 681 aaKnown RBP16.46■□□□□ 0.23
VAPA-202ENST00000400000 SART3Q15020 963 aaKnown RBP16.46■□□□□ 0.23
VAPA-202ENST00000400000 WWC3Q9ULE0 1092 aa16.46■□□□□ 0.23
VAPA-202ENST00000400000 RAD54L2Q9Y4B4 1467 aa16.46■□□□□ 0.23
VAPA-202ENST00000400000 NEFHP12036 1026 aa16.46■□□□□ 0.22
VAPA-202ENST00000400000 TATP17735 454 aaPredicted RBP16.46■□□□□ 0.22
VAPA-202ENST00000400000 RRS1Q15050 365 aaKnown RBP16.46■□□□□ 0.22
VAPA-202ENST00000400000 TEX35Q5T0J7 233 aa16.46■□□□□ 0.22
VAPA-202ENST00000400000 CCDC30Q5VVM6 783 aa16.46■□□□□ 0.22
VAPA-202ENST00000400000 CLASRPQ8N2M8 674 aaKnown RBP16.46■□□□□ 0.22
VAPA-202ENST00000400000 SYCP1Q15431 976 aa16.45■□□□□ 0.22
VAPA-202ENST00000400000 MIS18AQ9NYP9 233 aa16.45■□□□□ 0.22
VAPA-202ENST00000400000 PDCL3Q9H2J4 239 aa16.45■□□□□ 0.22
VAPA-202ENST00000400000 SLC4A2P04920 1241 aa16.45■□□□□ 0.22
VAPA-202ENST00000400000 USP5P45974 858 aa16.45■□□□□ 0.22
VAPA-202ENST00000400000 HSP90AB4PQ58FF6 505 aa16.45■□□□□ 0.22
VAPA-202ENST00000400000 MAP7D2Q96T17 732 aa16.45■□□□□ 0.22
VAPA-202ENST00000400000 MAGEC2Q9UBF1 373 aaPredicted RBP16.45■□□□□ 0.22
VAPA-202ENST00000400000 ECM2O94769 699 aaPredicted RBP16.45■□□□□ 0.22
VAPA-202ENST00000400000 SULT6B1Q6IMI4 303 aa16.44■□□□□ 0.22
VAPA-202ENST00000400000 ZBED9Q6R2W3 1325 aa16.44■□□□□ 0.22
VAPA-202ENST00000400000 ARHGAP5Q13017 1502 aa16.44■□□□□ 0.22
VAPA-202ENST00000400000 CDC45O75419 566 aa16.44■□□□□ 0.22
VAPA-202ENST00000400000 CCDC158Q5M9N0 1113 aa16.44■□□□□ 0.22
VAPA-202ENST00000400000 PPM1FP49593 454 aaPredicted RBP16.43■□□□□ 0.22
VAPA-202ENST00000400000 C11orf95C9JLR9 678 aaPredicted RBP16.43■□□□□ 0.22
VAPA-202ENST00000400000 PLEKHO1Q53GL0 409 aaPredicted RBP16.43■□□□□ 0.22
VAPA-202ENST00000400000 BCAR3O75815 825 aa16.43■□□□□ 0.22
VAPA-202ENST00000400000 SLC4A8Q2Y0W8 1093 aa16.43■□□□□ 0.22
VAPA-202ENST00000400000 TRMT1LQ7Z2T5 733 aaKnown RBP16.43■□□□□ 0.22
VAPA-202ENST00000400000 PSMA5P28066 241 aa16.42■□□□□ 0.22
VAPA-202ENST00000400000 AQRO60306 1485 aaKnown RBP eCLIP16.42■□□□□ 0.221e-7■■■□□ 17.5
VAPA-202ENST00000400000 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.42■□□□□ 0.22
VAPA-202ENST00000400000 SLC3A2P08195 630 aaKnown RBP16.42■□□□□ 0.22
VAPA-202ENST00000400000 GRM1Q13255 1194 aa16.41■□□□□ 0.22
VAPA-202ENST00000400000 MPHOSPH8Q99549 860 aa16.41■□□□□ 0.22
VAPA-202ENST00000400000 CDK19Q9BWU1 502 aa16.41■□□□□ 0.22
VAPA-202ENST00000400000 RBM10P98175 930 aaKnown RBP16.41■□□□□ 0.22
VAPA-202ENST00000400000 CCDC69A6NI79 296 aa16.41■□□□□ 0.22
VAPA-202ENST00000400000 TWISTNBQ3B726 338 aaPredicted RBP16.41■□□□□ 0.22
VAPA-202ENST00000400000 TCP11L2Q8N4U5 519 aa16.41■□□□□ 0.22
VAPA-202ENST00000400000 CCDC173Q0VFZ6 552 aa16.41■□□□□ 0.22
VAPA-202ENST00000400000 CENPHQ9H3R5 247 aa16.41■□□□□ 0.22
VAPA-202ENST00000400000 HDGFL1Q5TGJ6 251 aa16.4■□□□□ 0.22
VAPA-202ENST00000400000 STK38Q15208 465 aa16.4■□□□□ 0.22
VAPA-202ENST00000400000 NAT10Q9H0A0 1025 aaKnown RBP16.4■□□□□ 0.22
VAPA-202ENST00000400000 CABP1Q9NZU7 370 aa16.4■□□□□ 0.22
VAPA-202ENST00000400000 NASPP49321 788 aaPredicted RBP16.4■□□□□ 0.22
VAPA-202ENST00000400000 FAM193AP78312 1265 aa16.39■□□□□ 0.22
VAPA-202ENST00000400000 NUCB2P80303 420 aa16.39■□□□□ 0.22
VAPA-202ENST00000400000 ZNF530Q6P9A1 599 aaPredicted RBP16.39■□□□□ 0.22
VAPA-202ENST00000400000 PRDM11Q9NQV5 511 aa16.39■□□□□ 0.21
VAPA-202ENST00000400000 KIF7Q2M1P5 1343 aa16.39■□□□□ 0.21
VAPA-202ENST00000400000 KINO60870 393 aaKnown RBP16.39■□□□□ 0.21
VAPA-202ENST00000400000 PTCD1O75127 700 aaKnown RBP16.39■□□□□ 0.21
VAPA-202ENST00000400000 SMG6Q86US8 1419 aaKnown RBP16.39■□□□□ 0.21
VAPA-202ENST00000400000 CCDC97Q96F63 343 aaPredicted RBP16.39■□□□□ 0.21
VAPA-202ENST00000400000 USHBP1Q8N6Y0 703 aa16.39■□□□□ 0.21
VAPA-202ENST00000400000 MIA2Q96PC5 1412 aa16.39■□□□□ 0.21
VAPA-202ENST00000400000 PDZRN3Q9UPQ7 1066 aa16.39■□□□□ 0.21
VAPA-202ENST00000400000 TTLL12Q14166 644 aaPredicted RBP16.38■□□□□ 0.21
VAPA-202ENST00000400000 SERPINC1P01008 464 aa16.38■□□□□ 0.21
VAPA-202ENST00000400000 RAI14Q9P0K7 980 aa16.38■□□□□ 0.21
VAPA-202ENST00000400000 FAM43AQ8N2R8 423 aa16.38■□□□□ 0.21
VAPA-202ENST00000400000 RAPGEF3O95398 923 aa16.38■□□□□ 0.21
VAPA-202ENST00000400000 SSR1P43307 286 aaKnown RBP16.38■□□□□ 0.21
VAPA-202ENST00000400000 HSP90B2PQ58FF3 399 aa16.38■□□□□ 0.21
VAPA-202ENST00000400000 SLC12A5Q9H2X9 1139 aa16.38■□□□□ 0.21
VAPA-202ENST00000400000 IL1RAPL2Q9NP60 686 aa16.38■□□□□ 0.21
VAPA-202ENST00000400000 WDR78Q5VTH9 848 aa16.37■□□□□ 0.21
VAPA-202ENST00000400000 RSPH6AQ9H0K4 717 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms