RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 NSD2O96028 1365 aa20.17■□□□□ 0.82
TM9SF1-202ENST00000396854 CGNL1Q0VF96 1302 aa20.17■□□□□ 0.82
TM9SF1-202ENST00000396854 NHSL1Q5SYE7 1610 aa20.16■□□□□ 0.82
TM9SF1-202ENST00000396854 USP54Q70EL1 1684 aa20.15■□□□□ 0.82
TM9SF1-202ENST00000396854 ROBO1Q9Y6N7 1651 aa20.14■□□□□ 0.81
TM9SF1-202ENST00000396854 BRINP3Q76B58 766 aa20.14■□□□□ 0.81
TM9SF1-202ENST00000396854 PRKRIP1Q9H875 184 aaPredicted RBP20.14■□□□□ 0.81
TM9SF1-202ENST00000396854 PARD3Q8TEW0 1356 aa20.14■□□□□ 0.81
TM9SF1-202ENST00000396854 PIK3C2AO00443 1686 aa20.14■□□□□ 0.81
TM9SF1-202ENST00000396854 TTC21BQ7Z4L5 1316 aa20.13■□□□□ 0.81
TM9SF1-202ENST00000396854 TTC21AQ8NDW8 1320 aa20.12■□□□□ 0.81
TM9SF1-202ENST00000396854 FOXO3O43524 673 aa20.11■□□□□ 0.81
TM9SF1-202ENST00000396854 CC2D1BQ5T0F9 858 aaKnown RBP20.11■□□□□ 0.81
TM9SF1-202ENST00000396854 MARF1Q9Y4F3 1742 aaKnown RBP20.11■□□□□ 0.81
TM9SF1-202ENST00000396854 FYB1O15117 783 aa20.11■□□□□ 0.81
TM9SF1-202ENST00000396854 CERKQ8TCT0 537 aa20.11■□□□□ 0.81
TM9SF1-202ENST00000396854 PXDNQ92626 1479 aa20.1■□□□□ 0.81
TM9SF1-202ENST00000396854 NPHP3Q7Z494 1330 aa20.1■□□□□ 0.81
TM9SF1-202ENST00000396854 ALS2Q96Q42 1657 aa20.1■□□□□ 0.81
TM9SF1-202ENST00000396854 RALBP1Q15311 655 aa20.1■□□□□ 0.81
TM9SF1-202ENST00000396854 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.1■□□□□ 0.81
TM9SF1-202ENST00000396854 PSME1Q06323 249 aa20.09■□□□□ 0.81
TM9SF1-202ENST00000396854 AHDC1Q5TGY3 1603 aaPredicted RBP20.08■□□□□ 0.81
TM9SF1-202ENST00000396854 TOM1O60784 492 aa20.07■□□□□ 0.8
TM9SF1-202ENST00000396854 OVOS2A0A0J9YW53 1432 aa20.07■□□□□ 0.8
TM9SF1-202ENST00000396854 OVOS2Q6IE36 1432 aa20.07■□□□□ 0.8
TM9SF1-202ENST00000396854 KRT28Q7Z3Y7 464 aa20.06■□□□□ 0.8
TM9SF1-202ENST00000396854 NME9Q86XW9 330 aa20.06■□□□□ 0.8
TM9SF1-202ENST00000396854 SBNO1A3KN83 1393 aa20.06■□□□□ 0.8
TM9SF1-202ENST00000396854 USP31Q70CQ4 1352 aa20.06■□□□□ 0.8
TM9SF1-202ENST00000396854 GGNBP2Q9H3C7 697 aa20.06■□□□□ 0.8
TM9SF1-202ENST00000396854 CNGB1Q14028 1251 aaPredicted RBP20.05■□□□□ 0.8
TM9SF1-202ENST00000396854 SOS2Q07890 1332 aaPredicted RBP20.04■□□□□ 0.8
TM9SF1-202ENST00000396854 MYBBP1AQ9BQG0 1328 aaKnown RBP20.03■□□□□ 0.8
TM9SF1-202ENST00000396854 XPCQ01831 940 aaPredicted RBP20.03■□□□□ 0.8
TM9SF1-202ENST00000396854 DDX17Q92841 729 aaKnown RBP20.03■□□□□ 0.8
TM9SF1-202ENST00000396854 MORC1Q86VD1 984 aa20.03■□□□□ 0.8
TM9SF1-202ENST00000396854 TNS3Q68CZ2 1445 aa20.02■□□□□ 0.8
TM9SF1-202ENST00000396854 UBAP1LF5GYI3 381 aa20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 PAK3O75914 559 aaPredicted RBP20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 COG3Q96JB2 828 aa20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 MAP2P11137 1827 aaKnown RBP20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 MYT1Q01538 1121 aa20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 ABTB2Q8N961 1025 aa20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 ZRANB1Q9UGI0 708 aa20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 PHLPP1O60346 1717 aa20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 CRYBG1Q9Y4K1 1723 aa20.01■□□□□ 0.79
TM9SF1-202ENST00000396854 MED1Q15648 1581 aaPredicted RBP19.99■□□□□ 0.79
TM9SF1-202ENST00000396854 SPATA31A3Q5VYP0 1347 aa19.99■□□□□ 0.79
TM9SF1-202ENST00000396854 SLIT3O75094 1523 aa19.98■□□□□ 0.79
TM9SF1-202ENST00000396854 COL16A1Q07092 1604 aaPredicted RBP19.98■□□□□ 0.79
TM9SF1-202ENST00000396854 AATKQ6ZMQ8 1374 aa19.98■□□□□ 0.79
TM9SF1-202ENST00000396854 PPP2R1AP30153 589 aa19.98■□□□□ 0.79
TM9SF1-202ENST00000396854 PHRF1Q9P1Y6 1649 aaKnown RBP19.97■□□□□ 0.79
TM9SF1-202ENST00000396854 NLRP6P59044 892 aa19.97■□□□□ 0.79
TM9SF1-202ENST00000396854 ARHGEF10O15013 1369 aa19.96■□□□□ 0.79
TM9SF1-202ENST00000396854 NLRP13Q86W25 1043 aa19.96■□□□□ 0.79
TM9SF1-202ENST00000396854 ABCA3Q99758 1704 aa19.95■□□□□ 0.78
TM9SF1-202ENST00000396854 PIP4K2BP78356 416 aa19.95■□□□□ 0.78
TM9SF1-202ENST00000396854 USP19O94966 1318 aa19.94■□□□□ 0.78
TM9SF1-202ENST00000396854 NFAT5O94916 1531 aa19.94■□□□□ 0.78
TM9SF1-202ENST00000396854 SMG6Q86US8 1419 aaKnown RBP19.94■□□□□ 0.78
TM9SF1-202ENST00000396854 LTN1O94822 1766 aa19.94■□□□□ 0.78
TM9SF1-202ENST00000396854 COL22A1Q8NFW1 1626 aaPredicted RBP19.94■□□□□ 0.78
TM9SF1-202ENST00000396854 TNNT2P45379 298 aaPredicted RBP19.93■□□□□ 0.78
TM9SF1-202ENST00000396854 NUTM2GQ5VZR2 741 aa19.93■□□□□ 0.78
TM9SF1-202ENST00000396854 LMOD2Q6P5Q4 547 aa19.91■□□□□ 0.78
TM9SF1-202ENST00000396854 FKBP8Q14318 412 aa19.91■□□□□ 0.78
TM9SF1-202ENST00000396854 TSHZ2Q9NRE2 1034 aa19.9■□□□□ 0.78
TM9SF1-202ENST00000396854 PEAK1Q9H792 1746 aa19.9■□□□□ 0.78
TM9SF1-202ENST00000396854 CCDC184Q52MB2 194 aa19.9■□□□□ 0.78
TM9SF1-202ENST00000396854 LRRC59Q96AG4 307 aaKnown RBP19.9■□□□□ 0.78
TM9SF1-202ENST00000396854 CDK12Q9NYV4 1490 aaPredicted RBP19.89■□□□□ 0.77
TM9SF1-202ENST00000396854 KCNH5Q8NCM2 988 aa19.89■□□□□ 0.77
TM9SF1-202ENST00000396854 MTHFSP49914 203 aa19.88■□□□□ 0.77
TM9SF1-202ENST00000396854 POLKQ9UBT6 870 aa19.88■□□□□ 0.77
TM9SF1-202ENST00000396854 SHPRHQ149N8 1683 aa19.88■□□□□ 0.77
TM9SF1-202ENST00000396854 FBLN1P23142 703 aa19.88■□□□□ 0.77
TM9SF1-202ENST00000396854 MRS2Q9HD23 443 aa19.88■□□□□ 0.77
TM9SF1-202ENST00000396854 NEFLP07196 543 aa19.87■□□□□ 0.77
TM9SF1-202ENST00000396854 COL3A1P02461 1466 aaPredicted RBP19.86■□□□□ 0.77
TM9SF1-202ENST00000396854 INSRP06213 1382 aa19.86■□□□□ 0.77
TM9SF1-202ENST00000396854 KIF24Q5T7B8 1368 aa19.86■□□□□ 0.77
TM9SF1-202ENST00000396854 PNPLA6Q8IY17 1366 aa19.86■□□□□ 0.77
TM9SF1-202ENST00000396854 GCP02774 474 aa19.85■□□□□ 0.77
TM9SF1-202ENST00000396854 RRS1Q15050 365 aaKnown RBP19.85■□□□□ 0.77
TM9SF1-202ENST00000396854 EMILIN1Q9Y6C2 1016 aa19.85■□□□□ 0.77
TM9SF1-202ENST00000396854 MAP3K19Q56UN5 1328 aa19.84■□□□□ 0.77
TM9SF1-202ENST00000396854 SOX12O15370 315 aa19.83■□□□□ 0.77
TM9SF1-202ENST00000396854 RTL1A6NKG5 1358 aa19.83■□□□□ 0.76
TM9SF1-202ENST00000396854 ABCC6O95255 1503 aa19.82■□□□□ 0.76
TM9SF1-202ENST00000396854 FLT4P35916 1363 aa19.82■□□□□ 0.76
TM9SF1-202ENST00000396854 CFAP53Q96M91 514 aa19.82■□□□□ 0.76
TM9SF1-202ENST00000396854 COL18A1P39060 1754 aa19.81■□□□□ 0.76
TM9SF1-202ENST00000396854 CPDO75976 1380 aa19.81■□□□□ 0.76
TM9SF1-202ENST00000396854 CABLES1Q8TDN4 633 aa19.8■□□□□ 0.76
TM9SF1-202ENST00000396854 ARHGEF25Q86VW2 580 aa19.8■□□□□ 0.76
TM9SF1-202ENST00000396854 PNISRQ8TF01 805 aaKnown RBP19.8■□□□□ 0.76
TM9SF1-202ENST00000396854 RGPD5Q99666 1765 aa19.79■□□□□ 0.76
TM9SF1-202ENST00000396854 PPM1GO15355 546 aaPredicted RBP19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms