RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 MAP2P11137 1827 aaKnown RBP19.58■□□□□ 0.73
CBX3-202ENST00000396386 XRN1Q8IZH2 1706 aaKnown RBP19.58■□□□□ 0.73
CBX3-202ENST00000396386 ZNF142P52746 1687 aaPredicted RBP19.58■□□□□ 0.73
CBX3-202ENST00000396386 PTPRUQ92729 1446 aa19.58■□□□□ 0.72
CBX3-202ENST00000396386 TCP11L2Q8N4U5 519 aa19.58■□□□□ 0.72
CBX3-202ENST00000396386 PTCH1Q13635 1447 aa19.57■□□□□ 0.72
CBX3-202ENST00000396386 NCBP3Q53F19 620 aaKnown RBP19.57■□□□□ 0.72
CBX3-202ENST00000396386 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.57■□□□□ 0.72
CBX3-202ENST00000396386 SPINK5Q9NQ38 1064 aaPredicted RBP19.57■□□□□ 0.72
CBX3-202ENST00000396386 PLIN1O60240 522 aa19.56■□□□□ 0.72
CBX3-202ENST00000396386 PLPPR3Q6T4P5 718 aa19.56■□□□□ 0.72
CBX3-202ENST00000396386 CCDC61Q9Y6R9 512 aa19.56■□□□□ 0.72
CBX3-202ENST00000396386 PNPLA6Q8IY17 1366 aa19.56■□□□□ 0.72
CBX3-202ENST00000396386 CCDC27Q2M243 656 aa19.56■□□□□ 0.72
CBX3-202ENST00000396386 THEMISQ8N1K5 641 aaPredicted RBP19.56■□□□□ 0.72
CBX3-202ENST00000396386 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.56■□□□□ 0.72
CBX3-202ENST00000396386 PHF23Q9BUL5 403 aaPredicted RBP19.55■□□□□ 0.72
CBX3-202ENST00000396386 RBM19Q9Y4C8 960 aaKnown RBP19.55■□□□□ 0.72
CBX3-202ENST00000396386 DMRT2Q9Y5R5 561 aa19.55■□□□□ 0.72
CBX3-202ENST00000396386 RRP7AQ9Y3A4 280 aaKnown RBP19.54■□□□□ 0.72
CBX3-202ENST00000396386 CDK12Q9NYV4 1490 aaPredicted RBP19.53■□□□□ 0.72
CBX3-202ENST00000396386 PRR36Q9H6K5 1346 aa19.53■□□□□ 0.72
CBX3-202ENST00000396386 U2SURPO15042 1029 aaKnown RBP19.53■□□□□ 0.72
CBX3-202ENST00000396386 SLC26A8Q96RN1 970 aa19.53■□□□□ 0.72
CBX3-202ENST00000396386 CRBNQ96SW2 442 aa19.53■□□□□ 0.72
CBX3-202ENST00000396386 TBX22Q9Y458 520 aa19.53■□□□□ 0.72
CBX3-202ENST00000396386 LRRC7Q96NW7 1537 aa19.52■□□□□ 0.72
CBX3-202ENST00000396386 NEUROD2Q15784 382 aa19.52■□□□□ 0.72
CBX3-202ENST00000396386 WDR63Q8IWG1 891 aa19.52■□□□□ 0.72
CBX3-202ENST00000396386 DIAPH1O60610 1272 aaKnown RBP19.52■□□□□ 0.71
CBX3-202ENST00000396386 MAPK8IP3Q9UPT6 1336 aa19.5■□□□□ 0.71
CBX3-202ENST00000396386 AATKQ6ZMQ8 1374 aa19.5■□□□□ 0.71
CBX3-202ENST00000396386 NALCNQ8IZF0 1738 aa19.5■□□□□ 0.71
CBX3-202ENST00000396386 ILDR1Q86SU0 546 aaPredicted RBP19.5■□□□□ 0.71
CBX3-202ENST00000396386 NCKAP5LQ9HCH0 1330 aa19.49■□□□□ 0.71
CBX3-202ENST00000396386 NME9Q86XW9 330 aa19.49■□□□□ 0.71
CBX3-202ENST00000396386 ZNF692Q9BU19 519 aaPredicted RBP19.49■□□□□ 0.71
CBX3-202ENST00000396386 PLEKHF1Q96S99 279 aa19.48■□□□□ 0.71
CBX3-202ENST00000396386 C20orf194Q5TEA3 1177 aa19.48■□□□□ 0.71
CBX3-202ENST00000396386 PNNQ9H307 717 aaKnown RBP19.48■□□□□ 0.71
CBX3-202ENST00000396386 POLKQ9UBT6 870 aa19.48■□□□□ 0.71
CBX3-202ENST00000396386 AMOTL2Q9Y2J4 779 aa19.48■□□□□ 0.71
CBX3-202ENST00000396386 COG3Q96JB2 828 aa19.46■□□□□ 0.71
CBX3-202ENST00000396386 PIK3R4Q99570 1358 aa19.46■□□□□ 0.71
CBX3-202ENST00000396386 RGPD8O14715 1765 aaPredicted RBP19.46■□□□□ 0.7
CBX3-202ENST00000396386 USP6P35125 1406 aa19.45■□□□□ 0.7
CBX3-202ENST00000396386 MYH16Q9H6N6 1097 aa19.45■□□□□ 0.7
CBX3-202ENST00000396386 FMN2Q9NZ56 1722 aa19.45■□□□□ 0.7
CBX3-202ENST00000396386 PLEKHG3A1L390 1219 aa19.43■□□□□ 0.7
CBX3-202ENST00000396386 TMPOP42166 694 aaKnown RBP19.43■□□□□ 0.7
CBX3-202ENST00000396386 PPM1GO15355 546 aaPredicted RBP19.43■□□□□ 0.7
CBX3-202ENST00000396386 OVOS2A0A0J9YW53 1432 aa19.43■□□□□ 0.7
CBX3-202ENST00000396386 OVOS2Q6IE36 1432 aa19.43■□□□□ 0.7
CBX3-202ENST00000396386 CHD2O14647 1828 aaKnown RBP19.43■□□□□ 0.7
CBX3-202ENST00000396386 BCAR3O75815 825 aa19.42■□□□□ 0.7
CBX3-202ENST00000396386 ACEP12821 1306 aa19.42■□□□□ 0.7
CBX3-202ENST00000396386 ZRANB1Q9UGI0 708 aa19.42■□□□□ 0.7
CBX3-202ENST00000396386 EMILIN1Q9Y6C2 1016 aa19.41■□□□□ 0.7
CBX3-202ENST00000396386 TTC21BQ7Z4L5 1316 aa19.41■□□□□ 0.7
CBX3-202ENST00000396386 FCHSD2O94868 740 aa19.41■□□□□ 0.7
CBX3-202ENST00000396386 ANKARQ7Z5J8 1434 aa19.4■□□□□ 0.7
CBX3-202ENST00000396386 FBLN1P23142 703 aa19.39■□□□□ 0.7
CBX3-202ENST00000396386 RSPH6AQ9H0K4 717 aa19.39■□□□□ 0.7
CBX3-202ENST00000396386 LMTK3Q96Q04 1460 aa19.39■□□□□ 0.69
CBX3-202ENST00000396386 IL16Q14005 1332 aa19.39■□□□□ 0.69
CBX3-202ENST00000396386 SSH2Q76I76 1423 aa19.38■□□□□ 0.69
CBX3-202ENST00000396386 NUTM2FA1L443 756 aa19.38■□□□□ 0.69
CBX3-202ENST00000396386 NEFMP07197 916 aa19.38■□□□□ 0.69
CBX3-202ENST00000396386 TRIM35Q9UPQ4 493 aa19.38■□□□□ 0.69
CBX3-202ENST00000396386 CANXP27824 592 aaKnown RBP19.37■□□□□ 0.69
CBX3-202ENST00000396386 FANCIQ9NVI1 1328 aa19.37■□□□□ 0.69
CBX3-202ENST00000396386 PRKAR2BP31323 418 aa19.37■□□□□ 0.69
CBX3-202ENST00000396386 RARSP54136 660 aaKnown RBP19.37■□□□□ 0.69
CBX3-202ENST00000396386 PDE3AQ14432 1141 aa19.37■□□□□ 0.69
CBX3-202ENST00000396386 PEAK1Q9H792 1746 aa19.37■□□□□ 0.69
CBX3-202ENST00000396386 PIK3C2AO00443 1686 aa19.36■□□□□ 0.69
CBX3-202ENST00000396386 SETD1BQ9UPS6 1966 aaKnown RBP19.36■□□□□ 0.69
CBX3-202ENST00000396386 IL13P35225 146 aa19.36■□□□□ 0.69
CBX3-202ENST00000396386 USP54Q70EL1 1684 aa19.36■□□□□ 0.69
CBX3-202ENST00000396386 DLG5Q8TDM6 1919 aa19.36■□□□□ 0.69
CBX3-202ENST00000396386 TTC21AQ8NDW8 1320 aa19.36■□□□□ 0.69
CBX3-202ENST00000396386 CT47B1P0C2W7 299 aaPredicted RBP19.35■□□□□ 0.69
CBX3-202ENST00000396386 RIPK4P57078 832 aa19.35■□□□□ 0.69
CBX3-202ENST00000396386 RRS1Q15050 365 aaKnown RBP19.35■□□□□ 0.69
CBX3-202ENST00000396386 KCNA6P17658 529 aa19.34■□□□□ 0.69
CBX3-202ENST00000396386 ANKLE2Q86XL3 938 aa19.34■□□□□ 0.69
CBX3-202ENST00000396386 USP31Q70CQ4 1352 aa19.34■□□□□ 0.69
CBX3-202ENST00000396386 KDM2BQ8NHM5 1336 aa19.34■□□□□ 0.69
CBX3-202ENST00000396386 RGPD1P0DJD0 1748 aa19.34■□□□□ 0.69
CBX3-202ENST00000396386 TCERG1O14776 1098 aaKnown RBP19.33■□□□□ 0.69
CBX3-202ENST00000396386 CENPQQ7L2Z9 268 aaPredicted RBP19.33■□□□□ 0.68
CBX3-202ENST00000396386 HMOX1P09601 288 aa19.31■□□□□ 0.68
CBX3-202ENST00000396386 NFE2L2Q16236 605 aa19.31■□□□□ 0.68
CBX3-202ENST00000396386 TSR2Q969E8 191 aaKnown RBP19.31■□□□□ 0.68
CBX3-202ENST00000396386 MARF1Q9Y4F3 1742 aaKnown RBP19.31■□□□□ 0.68
CBX3-202ENST00000396386 NGDNQ8NEJ9 315 aaKnown RBP19.3■□□□□ 0.68
CBX3-202ENST00000396386 PMFBP1Q8TBY8 1022 aa19.3■□□□□ 0.68
CBX3-202ENST00000396386 FRAT1Q92837 279 aaPredicted RBP19.3■□□□□ 0.68
CBX3-202ENST00000396386 MS4A1P11836 297 aa19.28■□□□□ 0.68
CBX3-202ENST00000396386 EXOSC9Q06265 439 aaKnown RBP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms