RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 FAM43AQ8N2R8 423 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 CABP2Q9NPB3 220 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 C9orf84Q5VXU9 1444 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 ZNF644Q9H582 1327 aaPredicted RBP6.53□□□□□ -1.36
VPS13C-204ENST00000395898 CCP110O43303 1012 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 OFD1O75665 1012 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 NLRP2Q9NX02 1062 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 CCT4P50991 539 aaKnown RBP6.53□□□□□ -1.36
VPS13C-204ENST00000395898 CCDC158Q5M9N0 1113 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 THEMISQ8N1K5 641 aaPredicted RBP6.53□□□□□ -1.36
VPS13C-204ENST00000395898 IFT57Q9NWB7 429 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 SMARCE1Q969G3 411 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 KIAA1107Q9UPP5 1409 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 SYNJ1O43426 1573 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 WWC2Q6AWC2 1192 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 ZNF771Q7L3S4 317 aaPredicted RBP6.53□□□□□ -1.36
VPS13C-204ENST00000395898 CNKSR2Q8WXI2 1034 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 ZNF428Q96B54 188 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 SRCIN1Q9C0H9 1055 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 FILIP1LQ4L180 1135 aa6.53□□□□□ -1.36
VPS13C-204ENST00000395898 AQRO60306 1485 aaKnown RBP eCLIP6.53□□□□□ -1.361e-6■■■■■ 33.2
VPS13C-204ENST00000395898 PIP4K2AP48426 406 aaPredicted RBP6.52□□□□□ -1.36
VPS13C-204ENST00000395898 MRE11P49959 708 aa6.52□□□□□ -1.36
VPS13C-204ENST00000395898 GNL3LQ9NVN8 582 aaKnown RBP6.52□□□□□ -1.36
VPS13C-204ENST00000395898 NASPP49321 788 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 JMYQ8N9B5 988 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 ERCC4Q92889 916 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 CFTRP13569 1480 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 SURF6O75683 361 aaKnown RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 NOM1Q5C9Z4 860 aaKnown RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 MNS1Q8NEH6 495 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 FSD1Q9BTV5 496 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 CCDC39Q9UFE4 941 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 TCP11L2Q8N4U5 519 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 ADAMTS8Q9UP79 889 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 KIF14Q15058 1648 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 CC2D2AQ9P2K1 1620 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 ESCO1Q5FWF5 840 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 PANK1Q8TE04 598 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 ZNF396Q96N95 335 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 IFT140Q96RY7 1462 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 MRC2Q9UBG0 1479 aa6.52□□□□□ -1.37
VPS13C-204ENST00000395898 IKQ13123 557 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 KRI1Q8N9T8 703 aaKnown RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 TWISTNBQ3B726 338 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-204ENST00000395898 RABEP1Q15276 862 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 ZSCAN25Q6NSZ9 544 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 TMEM132EQ6IEE7 984 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 WDR63Q8IWG1 891 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 CCAR1Q8IX12 1150 aaKnown RBP6.51□□□□□ -1.37
VPS13C-204ENST00000395898 TATP17735 454 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-204ENST00000395898 RRP12Q5JTH9 1297 aaKnown RBP6.51□□□□□ -1.37
VPS13C-204ENST00000395898 TXNDC2Q86VQ3 553 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 CDK5RAP3Q96JB5 506 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 HMGXB3Q12766 1538 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 LUC7LQ9NQ29 371 aaKnown RBP6.51□□□□□ -1.37
VPS13C-204ENST00000395898 DNMBPQ6XZF7 1577 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 LRRCC1Q9C099 1032 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 MAGEC2Q9UBF1 373 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-204ENST00000395898 CNNM1Q9NRU3 951 aa6.51□□□□□ -1.37
VPS13C-204ENST00000395898 TXLNBQ8N3L3 684 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 PRAM1Q96QH2 718 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 MAP7D2Q96T17 732 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 PRG4Q92954 1404 aaPredicted RBP6.5□□□□□ -1.37
VPS13C-204ENST00000395898 DCTN1Q14203 1278 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 AEBP1Q8IUX7 1158 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 DCAF8L1A6NGE4 600 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 PRKAR2BP31323 418 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 SYCP1Q15431 976 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 NACAP1Q9BZK3 213 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 DACH1Q9UI36 760 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 EPRSP07814 1512 aaKnown RBP6.5□□□□□ -1.37
VPS13C-204ENST00000395898 FYB1O15117 783 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 PPP2R1AP30153 589 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 HSP90AB2PQ58FF8 381 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 SPG7Q9UQ90 795 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 NEK4P51957 841 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 DAPK1P53355 1430 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 NFKBIBQ15653 356 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 AFAP1Q8N556 730 aa6.5□□□□□ -1.37
VPS13C-204ENST00000395898 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-204ENST00000395898 TTC39AQ5SRH9 613 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 TRIM22Q8IYM9 498 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CCDC141Q6ZP82 1450 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 TRAK2O60296 914 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 ZFYVE27Q5T4F4 411 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 HDGFL1Q5TGJ6 251 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 POGZQ7Z3K3 1410 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CFAP70Q5T0N1 1121 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 RPGRIP1LQ68CZ1 1315 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CCDC57Q2TAC2 916 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 ATAD2Q6PL18 1390 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 IQGAP2Q13576 1575 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CYP46A1Q9Y6A2 500 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 TROQ12816 1431 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CABP4P57796 275 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 STIM1Q13586 685 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CDK19Q9BWU1 502 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 TRIM5Q9C035 493 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CFAP45Q9UL16 551 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms