RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 SKAP1Q86WV1 359 aa18.17■□□□□ 0.5
SNCA-204ENST00000394989 ADAMTS13Q76LX8 1427 aa18.17■□□□□ 0.5
SNCA-204ENST00000394989 PPIP5K1Q6PFW1 1433 aa18.17■□□□□ 0.5
SNCA-204ENST00000394989 NCBP3Q53F19 620 aaKnown RBP18.16■□□□□ 0.5
SNCA-204ENST00000394989 FBLN1P23142 703 aa18.16■□□□□ 0.5
SNCA-204ENST00000394989 NCKAP5LQ9HCH0 1330 aa18.15■□□□□ 0.5
SNCA-204ENST00000394989 U2SURPO15042 1029 aaKnown RBP18.15■□□□□ 0.5
SNCA-204ENST00000394989 CEBPAP49715 358 aaPredicted RBP18.15■□□□□ 0.5
SNCA-204ENST00000394989 HDGFP51858 240 aaKnown RBP18.15■□□□□ 0.5
SNCA-204ENST00000394989 TCERG1O14776 1098 aaKnown RBP18.15■□□□□ 0.5
SNCA-204ENST00000394989 SIRT1Q96EB6 747 aa18.15■□□□□ 0.5
SNCA-204ENST00000394989 LTKP29376 864 aa18.14■□□□□ 0.49
SNCA-204ENST00000394989 ROBO2Q9HCK4 1378 aa18.14■□□□□ 0.49
SNCA-204ENST00000394989 C3P01024 1663 aa18.13■□□□□ 0.49
SNCA-204ENST00000394989 EDC4Q6P2E9 1401 aaKnown RBP18.13■□□□□ 0.49
SNCA-204ENST00000394989 CDC42BPGQ6DT37 1551 aa18.13■□□□□ 0.49
SNCA-204ENST00000394989 NUDT16Q96DE0 195 aaKnown RBP18.12■□□□□ 0.49
SNCA-204ENST00000394989 MON2Q7Z3U7 1717 aa18.12■□□□□ 0.49
SNCA-204ENST00000394989 POLKQ9UBT6 870 aa18.12■□□□□ 0.49
SNCA-204ENST00000394989 MAP2P11137 1827 aaKnown RBP18.12■□□□□ 0.49
SNCA-204ENST00000394989 RARSP54136 660 aaKnown RBP18.12■□□□□ 0.49
SNCA-204ENST00000394989 NOP58Q9Y2X3 529 aaKnown RBP18.12■□□□□ 0.49
SNCA-204ENST00000394989 DIAPH1O60610 1272 aaKnown RBP18.11■□□□□ 0.49
SNCA-204ENST00000394989 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.11■□□□□ 0.49
SNCA-204ENST00000394989 PLEKHG1Q9ULL1 1385 aa18.11■□□□□ 0.49
SNCA-204ENST00000394989 TMPOP42166 694 aaKnown RBP18.11■□□□□ 0.49
SNCA-204ENST00000394989 TRIM35Q9UPQ4 493 aa18.11■□□□□ 0.49
SNCA-204ENST00000394989 PRR36Q9H6K5 1346 aa18.1■□□□□ 0.49
SNCA-204ENST00000394989 AKAP12Q02952 1782 aa18.1■□□□□ 0.49
SNCA-204ENST00000394989 NME9Q86XW9 330 aa18.1■□□□□ 0.49
SNCA-204ENST00000394989 PDE3AQ14432 1141 aa18.09■□□□□ 0.49
SNCA-204ENST00000394989 CENPQQ7L2Z9 268 aaPredicted RBP18.09■□□□□ 0.49
SNCA-204ENST00000394989 ZRANB1Q9UGI0 708 aa18.09■□□□□ 0.49
SNCA-204ENST00000394989 CCDC61Q9Y6R9 512 aa18.09■□□□□ 0.49
SNCA-204ENST00000394989 MS4A1P11836 297 aa18.09■□□□□ 0.49
SNCA-204ENST00000394989 LRRC7Q96NW7 1537 aa18.09■□□□□ 0.49
SNCA-204ENST00000394989 PDE4AP27815 886 aa18.07■□□□□ 0.48
SNCA-204ENST00000394989 PANK1Q8TE04 598 aa18.07■□□□□ 0.48
SNCA-204ENST00000394989 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.07■□□□□ 0.48
SNCA-204ENST00000394989 MYH16Q9H6N6 1097 aa18.07■□□□□ 0.48
SNCA-204ENST00000394989 ITSN1Q15811 1721 aa18.07■□□□□ 0.48
SNCA-204ENST00000394989 PTPRUQ92729 1446 aa18.07■□□□□ 0.48
SNCA-204ENST00000394989 FER1L4A9Z1Z3 1794 aa18.07■□□□□ 0.48
SNCA-204ENST00000394989 PPM1GO15355 546 aaPredicted RBP18.06■□□□□ 0.48
SNCA-204ENST00000394989 BACH2Q9BYV9 841 aa18.06■□□□□ 0.48
SNCA-204ENST00000394989 MAPK8IP3Q9UPT6 1336 aa18.06■□□□□ 0.48
SNCA-204ENST00000394989 NPM2Q86SE8 214 aaKnown RBP18.06■□□□□ 0.48
SNCA-204ENST00000394989 IL27Q8NEV9 243 aa18.06■□□□□ 0.48
SNCA-204ENST00000394989 TSR2Q969E8 191 aaKnown RBP18.06■□□□□ 0.48
SNCA-204ENST00000394989 EMILIN1Q9Y6C2 1016 aa18.06■□□□□ 0.48
SNCA-204ENST00000394989 SLIT1O75093 1534 aa18.06■□□□□ 0.48
SNCA-204ENST00000394989 FRAT1Q92837 279 aaPredicted RBP18.05■□□□□ 0.48
SNCA-204ENST00000394989 BCL2L13Q9BXK5 485 aa18.05■□□□□ 0.48
SNCA-204ENST00000394989 RTL5Q5HYW3 569 aaPredicted RBP18.05■□□□□ 0.48
SNCA-204ENST00000394989 TNNQ9UQP3 1299 aa18.05■□□□□ 0.48
SNCA-204ENST00000394989 ARHGAP23Q9P227 1491 aa18.05■□□□□ 0.48
SNCA-204ENST00000394989 TOPAZ1Q8N9V7 1692 aa18.05■□□□□ 0.48
SNCA-204ENST00000394989 SLC26A8Q96RN1 970 aa18.04■□□□□ 0.48
SNCA-204ENST00000394989 RSPH6AQ9H0K4 717 aa18.04■□□□□ 0.48
SNCA-204ENST00000394989 COG6Q9Y2V7 657 aa18.04■□□□□ 0.48
SNCA-204ENST00000394989 CANXP27824 592 aaKnown RBP18.03■□□□□ 0.48
SNCA-204ENST00000394989 NRKQ7Z2Y5 1582 aa18.03■□□□□ 0.48
SNCA-204ENST00000394989 FCHSD2O94868 740 aa18.03■□□□□ 0.48
SNCA-204ENST00000394989 RLBP1P12271 317 aa18.03■□□□□ 0.48
SNCA-204ENST00000394989 RIPK4P57078 832 aa18.03■□□□□ 0.48
SNCA-204ENST00000394989 AATKQ6ZMQ8 1374 aa18.03■□□□□ 0.48
SNCA-204ENST00000394989 CDK12Q9NYV4 1490 aaPredicted RBP18.03■□□□□ 0.48
SNCA-204ENST00000394989 PLPPR3Q6T4P5 718 aa18.02■□□□□ 0.48
SNCA-204ENST00000394989 IGHDP01880 384 aa18.01■□□□□ 0.47
SNCA-204ENST00000394989 PRKAR2BP31323 418 aa18.01■□□□□ 0.47
SNCA-204ENST00000394989 IL13P35225 146 aa18.01■□□□□ 0.47
SNCA-204ENST00000394989 EXOSC9Q06265 439 aaKnown RBP18■□□□□ 0.47
SNCA-204ENST00000394989 CLUAP1Q96AJ1 413 aa18■□□□□ 0.47
SNCA-204ENST00000394989 IL16Q14005 1332 aa18■□□□□ 0.47
SNCA-204ENST00000394989 COG3Q96JB2 828 aa18■□□□□ 0.47
SNCA-204ENST00000394989 ZNF692Q9BU19 519 aaPredicted RBP18■□□□□ 0.47
SNCA-204ENST00000394989 RRS1Q15050 365 aaKnown RBP17.99■□□□□ 0.47
SNCA-204ENST00000394989 PHACTR3Q96KR7 559 aa17.99■□□□□ 0.47
SNCA-204ENST00000394989 PNNQ9H307 717 aaKnown RBP17.99■□□□□ 0.47
SNCA-204ENST00000394989 EID1Q9Y6B2 187 aa17.99■□□□□ 0.47
SNCA-204ENST00000394989 HMOX1P09601 288 aa17.99■□□□□ 0.47
SNCA-204ENST00000394989 ANP32AP39687 249 aaKnown RBP17.99■□□□□ 0.47
SNCA-204ENST00000394989 NUTM2FA1L443 756 aa17.99■□□□□ 0.47
SNCA-204ENST00000394989 ACEP12821 1306 aa17.98■□□□□ 0.47
SNCA-204ENST00000394989 CT47B1P0C2W7 299 aaPredicted RBP17.97■□□□□ 0.47
SNCA-204ENST00000394989 IPO9Q96P70 1041 aaKnown RBP17.97■□□□□ 0.47
SNCA-204ENST00000394989 AMOTL2Q9Y2J4 779 aa17.97■□□□□ 0.47
SNCA-204ENST00000394989 PLEKHG3A1L390 1219 aa17.96■□□□□ 0.47
SNCA-204ENST00000394989 TBX22Q9Y458 520 aa17.96■□□□□ 0.47
SNCA-204ENST00000394989 LAS1LQ9Y4W2 734 aaKnown RBP17.96■□□□□ 0.47
SNCA-204ENST00000394989 TTC21BQ7Z4L5 1316 aa17.96■□□□□ 0.47
SNCA-204ENST00000394989 ZBTB47Q9UFB7 747 aaPredicted RBP17.95■□□□□ 0.46
SNCA-204ENST00000394989 PTCH1Q13635 1447 aa17.95■□□□□ 0.46
SNCA-204ENST00000394989 USP6P35125 1406 aa17.95■□□□□ 0.46
SNCA-204ENST00000394989 OVOS2A0A0J9YW53 1432 aa17.94■□□□□ 0.46
SNCA-204ENST00000394989 OVOS2Q6IE36 1432 aa17.94■□□□□ 0.46
SNCA-204ENST00000394989 SSH1Q8WYL5 1049 aa17.94■□□□□ 0.46
SNCA-204ENST00000394989 THEMISQ8N1K5 641 aaPredicted RBP17.93■□□□□ 0.46
SNCA-204ENST00000394989 PCDHB15Q9Y5E8 787 aa17.93■□□□□ 0.46
SNCA-204ENST00000394989 NALCNQ8IZF0 1738 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms