RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 ZBED9Q6R2W3 1325 aa15.86■□□□□ 0.13
USP49-203ENST00000394253 C22orf23Q9BZE7 217 aa15.85■□□□□ 0.13
USP49-203ENST00000394253 DNAI2Q9GZS0 605 aa15.85■□□□□ 0.13
USP49-203ENST00000394253 CPSF2Q9P2I0 782 aaKnown RBP15.85■□□□□ 0.13
USP49-203ENST00000394253 PDCL3Q9H2J4 239 aa15.85■□□□□ 0.13
USP49-203ENST00000394253 ZNF397Q8NF99 534 aaPredicted RBP15.85■□□□□ 0.13
USP49-203ENST00000394253 SETD5Q9C0A6 1442 aa15.84■□□□□ 0.13
USP49-203ENST00000394253 MNAT1P51948 309 aa15.84■□□□□ 0.13
USP49-203ENST00000394253 RBM25P49756 843 aaKnown RBP15.83■□□□□ 0.13
USP49-203ENST00000394253 GTF2A1P52655 376 aaPredicted RBP15.83■□□□□ 0.13
USP49-203ENST00000394253 IRX3P78415 501 aaPredicted RBP15.83■□□□□ 0.13
USP49-203ENST00000394253 KRT18P05783 430 aaKnown RBP15.83■□□□□ 0.12
USP49-203ENST00000394253 NEBLO76041 1014 aa15.83■□□□□ 0.12
USP49-203ENST00000394253 RRP1P56182 461 aaKnown RBP15.83■□□□□ 0.12
USP49-203ENST00000394253 TMCO5BA8MYB1 307 aa15.82■□□□□ 0.12
USP49-203ENST00000394253 NAP1L3Q99457 506 aaPredicted RBP15.82■□□□□ 0.12
USP49-203ENST00000394253 CCDC9Q9Y3X0 531 aaKnown RBP15.82■□□□□ 0.12
USP49-203ENST00000394253 CGNQ9P2M7 1197 aaKnown RBP15.82■□□□□ 0.12
USP49-203ENST00000394253 POTEJP0CG39 1038 aa15.82■□□□□ 0.12
USP49-203ENST00000394253 SIN3AQ96ST3 1273 aa15.82■□□□□ 0.12
USP49-203ENST00000394253 TAOK3Q9H2K8 898 aa15.82■□□□□ 0.12
USP49-203ENST00000394253 HMGB1P1B2RPK0 211 aaPredicted RBP15.81■□□□□ 0.12
USP49-203ENST00000394253 PDIA4P13667 645 aaKnown RBP15.81■□□□□ 0.12
USP49-203ENST00000394253 NGEFQ8N5V2 710 aa15.81■□□□□ 0.12
USP49-203ENST00000394253 TAF4BQ92750 862 aa15.81■□□□□ 0.12
USP49-203ENST00000394253 SLC3A2P08195 630 aaKnown RBP15.81■□□□□ 0.12
USP49-203ENST00000394253 TIGD1Q96MW7 591 aa15.81■□□□□ 0.12
USP49-203ENST00000394253 IFFO1Q0D2I5 559 aa15.81■□□□□ 0.12
USP49-203ENST00000394253 SAFB2Q14151 953 aaKnown RBP eCLIP15.81■□□□□ 0.12
USP49-203ENST00000394253 FMNL2Q96PY5 1086 aa15.81■□□□□ 0.12
USP49-203ENST00000394253 EPB41L2O43491 1005 aaKnown RBP15.81■□□□□ 0.12
USP49-203ENST00000394253 SOGA3Q5TF21 947 aa15.8■□□□□ 0.12
USP49-203ENST00000394253 ARHGAP29Q52LW3 1261 aa15.8■□□□□ 0.12
USP49-203ENST00000394253 HMGB1P09429 215 aaKnown RBP15.8■□□□□ 0.12
USP49-203ENST00000394253 DNAAF4Q8WXU2 420 aa15.8■□□□□ 0.12
USP49-203ENST00000394253 HSPA5P11021 654 aaKnown RBP15.8■□□□□ 0.12
USP49-203ENST00000394253 G3BP1Q13283 466 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP49-203ENST00000394253 TNMDQ9H2S6 317 aa15.8■□□□□ 0.12
USP49-203ENST00000394253 DDX58O95786 925 aaKnown RBP15.8■□□□□ 0.12
USP49-203ENST00000394253 FERP16591 822 aa15.8■□□□□ 0.12
USP49-203ENST00000394253 HIP1O00291 1037 aa15.79■□□□□ 0.12
USP49-203ENST00000394253 KIF18AQ8NI77 898 aa15.79■□□□□ 0.12
USP49-203ENST00000394253 HOOK3Q86VS8 718 aa15.79■□□□□ 0.12
USP49-203ENST00000394253 AMPHP49418 695 aa15.79■□□□□ 0.12
USP49-203ENST00000394253 C1orf141Q5JVX7 400 aa15.79■□□□□ 0.12
USP49-203ENST00000394253 POTEB2H3BUK9 544 aa15.79■□□□□ 0.12
USP49-203ENST00000394253 SREK1Q8WXA9 508 aaKnown RBP15.79■□□□□ 0.12
USP49-203ENST00000394253 NOL3O60936 208 aaKnown RBP15.78■□□□□ 0.12
USP49-203ENST00000394253 PAIP2Q9BPZ3 127 aaKnown RBP15.78■□□□□ 0.12
USP49-203ENST00000394253 CCDC113Q9H0I3 377 aa15.78■□□□□ 0.12
USP49-203ENST00000394253 RNF187Q5TA31 235 aaPredicted RBP15.78■□□□□ 0.12
USP49-203ENST00000394253 FAM177A1Q8N128 213 aaPredicted RBP15.78■□□□□ 0.12
USP49-203ENST00000394253 ERC1Q8IUD2 1116 aa15.78■□□□□ 0.12
USP49-203ENST00000394253 MYBBP1AQ9BQG0 1328 aaKnown RBP15.78■□□□□ 0.12
USP49-203ENST00000394253 CCDC6Q16204 474 aa15.78■□□□□ 0.12
USP49-203ENST00000394253 ANKS4BQ8N8V4 417 aa15.78■□□□□ 0.12
USP49-203ENST00000394253 BBXQ8WY36 941 aaPredicted RBP15.78■□□□□ 0.12
USP49-203ENST00000394253 IVLP07476 585 aa15.77■□□□□ 0.12
USP49-203ENST00000394253 HSPA4P34932 840 aa15.77■□□□□ 0.12
USP49-203ENST00000394253 CTR9Q6PD62 1173 aa15.77■□□□□ 0.12
USP49-203ENST00000394253 ZSCAN12O43309 604 aa15.77■□□□□ 0.12
USP49-203ENST00000394253 FOSBP53539 338 aa15.77■□□□□ 0.12
USP49-203ENST00000394253 CNTROBQ8N137 903 aa15.77■□□□□ 0.12
USP49-203ENST00000394253 VGFO15240 615 aaPredicted RBP15.77■□□□□ 0.11
USP49-203ENST00000394253 ANKRD1Q15327 319 aa15.76■□□□□ 0.11
USP49-203ENST00000394253 KIF27Q86VH2 1401 aa15.76■□□□□ 0.11
USP49-203ENST00000394253 VPS36Q86VN1 386 aa15.76■□□□□ 0.11
USP49-203ENST00000394253 DDX12PQ92771 950 aa15.76■□□□□ 0.11
USP49-203ENST00000394253 GSTTP1A0A1W2PQM5 241 aa15.76■□□□□ 0.11
USP49-203ENST00000394253 PPP1R12BO60237 982 aaPredicted RBP15.76■□□□□ 0.11
USP49-203ENST00000394253 KIF5CO60282 957 aa15.76■□□□□ 0.11
USP49-203ENST00000394253 FILIP1Q7Z7B0 1213 aa15.76■□□□□ 0.11
USP49-203ENST00000394253 UBE4AQ14139 1066 aa15.75■□□□□ 0.11
USP49-203ENST00000394253 BAZ1BQ9UIG0 1483 aaKnown RBP15.75■□□□□ 0.11
USP49-203ENST00000394253 CEP83Q9Y592 693 aa15.75■□□□□ 0.11
USP49-203ENST00000394253 SMTNL1A8MU46 457 aa15.75■□□□□ 0.11
USP49-203ENST00000394253 GTPBP4Q9BZE4 634 aaKnown RBP15.75■□□□□ 0.11
USP49-203ENST00000394253 TANGO6Q9C0B7 1094 aa15.75■□□□□ 0.11
USP49-203ENST00000394253 CASQ1P31415 396 aa15.75■□□□□ 0.11
USP49-203ENST00000394253 STK38Q15208 465 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 CCDC160A6NGH7 325 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 ESPNB1AK53 854 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 TTC5Q8N0Z6 440 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 STK26Q9P289 416 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 ZFYP08048 801 aaPredicted RBP15.74■□□□□ 0.11
USP49-203ENST00000394253 GRPEL1Q9HAV7 217 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 MYH10P35580 1976 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 CDC45O75419 566 aa15.74■□□□□ 0.11
USP49-203ENST00000394253 NAA15Q9BXJ9 866 aaKnown RBP15.73■□□□□ 0.11
USP49-203ENST00000394253 CCDC83Q8IWF9 413 aa15.73■□□□□ 0.11
USP49-203ENST00000394253 IKQ13123 557 aaPredicted RBP15.73■□□□□ 0.11
USP49-203ENST00000394253 TNNT1P13805 278 aa15.73■□□□□ 0.11
USP49-203ENST00000394253 CEP57L1Q8IYX8 460 aa15.73■□□□□ 0.11
USP49-203ENST00000394253 PTPN14Q15678 1187 aa15.72■□□□□ 0.11
USP49-203ENST00000394253 SPA17Q15506 151 aa15.72■□□□□ 0.11
USP49-203ENST00000394253 BRPF3Q9ULD4 1205 aa15.72■□□□□ 0.11
USP49-203ENST00000394253 WDR33Q9C0J8 1336 aaKnown RBP15.72■□□□□ 0.11
USP49-203ENST00000394253 ME1P48163 572 aa15.71■□□□□ 0.11
USP49-203ENST00000394253 KRT85P78386 507 aa15.71■□□□□ 0.11
USP49-203ENST00000394253 FSD2A1L4K1 749 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms