RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 CCDC146Q8IYE0 955 aa11.48□□□□□ -0.57
TDP1-203ENST00000393454 ZRANB1Q9UGI0 708 aa11.48□□□□□ -0.57
TDP1-203ENST00000393454 TTC21BQ7Z4L5 1316 aa11.48□□□□□ -0.57
TDP1-203ENST00000393454 ANKARQ7Z5J8 1434 aa11.48□□□□□ -0.57
TDP1-203ENST00000393454 PPM1GO15355 546 aaPredicted RBP11.47□□□□□ -0.57
TDP1-203ENST00000393454 USP6P35125 1406 aa11.47□□□□□ -0.57
TDP1-203ENST00000393454 ADGRL3Q9HAR2 1447 aa11.47□□□□□ -0.57
TDP1-203ENST00000393454 FBLN1P23142 703 aa11.47□□□□□ -0.57
TDP1-203ENST00000393454 NWD1Q149M9 1564 aa11.47□□□□□ -0.57
TDP1-203ENST00000393454 LMTK3Q96Q04 1460 aa11.46□□□□□ -0.58
TDP1-203ENST00000393454 SHPRHQ149N8 1683 aa11.45□□□□□ -0.58
TDP1-203ENST00000393454 NUDCQ9Y266 331 aa11.45□□□□□ -0.58
TDP1-203ENST00000393454 MAP2P11137 1827 aaKnown RBP11.45□□□□□ -0.58
TDP1-203ENST00000393454 U2SURPO15042 1029 aaKnown RBP11.45□□□□□ -0.58
TDP1-203ENST00000393454 NEFLP07196 543 aa11.45□□□□□ -0.58
TDP1-203ENST00000393454 U2AF1L5P0DN76 240 aaPredicted RBP11.45□□□□□ -0.58
TDP1-203ENST00000393454 U2AF1Q01081 240 aaKnown RBP eCLIP11.45□□□□□ -0.58
TDP1-203ENST00000393454 ESCO1Q5FWF5 840 aa11.45□□□□□ -0.58
TDP1-203ENST00000393454 PHF8Q9UPP1 1060 aa11.45□□□□□ -0.58
TDP1-203ENST00000393454 SUPT16HQ9Y5B9 1047 aaKnown RBP11.45□□□□□ -0.58
TDP1-203ENST00000393454 POLKQ9UBT6 870 aa11.44□□□□□ -0.58
TDP1-203ENST00000393454 NRKQ7Z2Y5 1582 aa11.44□□□□□ -0.58
TDP1-203ENST00000393454 SMG6Q86US8 1419 aaKnown RBP11.44□□□□□ -0.58
TDP1-203ENST00000393454 APAF1O14727 1248 aa11.44□□□□□ -0.58
TDP1-203ENST00000393454 TTC21AQ8NDW8 1320 aa11.43□□□□□ -0.58
TDP1-203ENST00000393454 DIAPH1O60610 1272 aaKnown RBP11.43□□□□□ -0.58
TDP1-203ENST00000393454 PAK3O75914 559 aaPredicted RBP11.43□□□□□ -0.58
TDP1-203ENST00000393454 PDE3BQ13370 1112 aa11.43□□□□□ -0.58
TDP1-203ENST00000393454 POTEDQ86YR6 584 aa11.43□□□□□ -0.58
TDP1-203ENST00000393454 RRS1Q15050 365 aaKnown RBP11.42□□□□□ -0.58
TDP1-203ENST00000393454 EMILIN1Q9Y6C2 1016 aa11.42□□□□□ -0.58
TDP1-203ENST00000393454 SOX12O15370 315 aa11.42□□□□□ -0.58
TDP1-203ENST00000393454 FKBP8Q14318 412 aa11.42□□□□□ -0.58
TDP1-203ENST00000393454 RUNDC1Q96C34 613 aa11.42□□□□□ -0.58
TDP1-203ENST00000393454 C19orf44Q9H6X5 657 aa11.42□□□□□ -0.58
TDP1-203ENST00000393454 SSH2Q76I76 1423 aa11.41□□□□□ -0.58
TDP1-203ENST00000393454 PSME1Q06323 249 aa11.41□□□□□ -0.58
TDP1-203ENST00000393454 STRCP1A6NGW2 1772 aa11.41□□□□□ -0.58
TDP1-203ENST00000393454 STRCQ7RTU9 1775 aa11.41□□□□□ -0.58
TDP1-203ENST00000393454 TMEM94Q12767 1356 aa11.41□□□□□ -0.58
TDP1-203ENST00000393454 AATKQ6ZMQ8 1374 aa11.41□□□□□ -0.58
TDP1-203ENST00000393454 ATF3P18847 181 aa11.4□□□□□ -0.58
TDP1-203ENST00000393454 NUTM2GQ5VZR2 741 aa11.4□□□□□ -0.58
TDP1-203ENST00000393454 CDCA7LQ96GN5 454 aa11.4□□□□□ -0.58
TDP1-203ENST00000393454 COL3A1P02461 1466 aaPredicted RBP11.4□□□□□ -0.58
TDP1-203ENST00000393454 NLRP6P59044 892 aa11.4□□□□□ -0.58
TDP1-203ENST00000393454 NEUROD2Q15784 382 aa11.4□□□□□ -0.58
TDP1-203ENST00000393454 ORAI2Q96SN7 254 aa11.4□□□□□ -0.58
TDP1-203ENST00000393454 PNPLA6Q8IY17 1366 aa11.4□□□□□ -0.59
TDP1-203ENST00000393454 ABTB2Q8N961 1025 aa11.39□□□□□ -0.59
TDP1-203ENST00000393454 OVOS2A0A0J9YW53 1432 aa11.39□□□□□ -0.59
TDP1-203ENST00000393454 OVOS2Q6IE36 1432 aa11.39□□□□□ -0.59
TDP1-203ENST00000393454 RRP7AQ9Y3A4 280 aaKnown RBP11.39□□□□□ -0.59
TDP1-203ENST00000393454 TCP11L2Q8N4U5 519 aa11.38□□□□□ -0.59
TDP1-203ENST00000393454 FOXO3O43524 673 aa11.37□□□□□ -0.59
TDP1-203ENST00000393454 GOLGA2Q08379 1002 aa11.37□□□□□ -0.59
TDP1-203ENST00000393454 NGEFQ8N5V2 710 aa11.37□□□□□ -0.59
TDP1-203ENST00000393454 CDK12Q9NYV4 1490 aaPredicted RBP11.37□□□□□ -0.59
TDP1-203ENST00000393454 PIK3C2AO00443 1686 aa11.37□□□□□ -0.59
TDP1-203ENST00000393454 MAPK8IP3Q9UPT6 1336 aa11.37□□□□□ -0.59
TDP1-203ENST00000393454 IRX6P78412 446 aaPredicted RBP11.37□□□□□ -0.59
TDP1-203ENST00000393454 PNNQ9H307 717 aaKnown RBP11.37□□□□□ -0.59
TDP1-203ENST00000393454 USP31Q70CQ4 1352 aa11.37□□□□□ -0.59
TDP1-203ENST00000393454 XPCQ01831 940 aaPredicted RBP11.36□□□□□ -0.59
TDP1-203ENST00000393454 NCOA3Q9Y6Q9 1424 aa11.36□□□□□ -0.59
TDP1-203ENST00000393454 C1orf167Q5SNV9 1468 aa11.36□□□□□ -0.59
TDP1-203ENST00000393454 MSH6P52701 1360 aa11.36□□□□□ -0.59
TDP1-203ENST00000393454 IL13P35225 146 aa11.36□□□□□ -0.59
TDP1-203ENST00000393454 ZNF521Q96K83 1311 aa11.35□□□□□ -0.59
TDP1-203ENST00000393454 ZNF335Q9H4Z2 1342 aaPredicted RBP11.35□□□□□ -0.59
TDP1-203ENST00000393454 NEFMP07197 916 aa11.35□□□□□ -0.59
TDP1-203ENST00000393454 HMOX1P09601 288 aa11.35□□□□□ -0.59
TDP1-203ENST00000393454 LMOD2Q6P5Q4 547 aa11.35□□□□□ -0.59
TDP1-203ENST00000393454 CADPS2Q86UW7 1296 aa11.35□□□□□ -0.59
TDP1-203ENST00000393454 FCHSD2O94868 740 aa11.34□□□□□ -0.59
TDP1-203ENST00000393454 AMPHP49418 695 aa11.34□□□□□ -0.59
TDP1-203ENST00000393454 WWC1Q8IX03 1113 aa11.34□□□□□ -0.59
TDP1-203ENST00000393454 PLEKHG5O94827 1062 aa11.34□□□□□ -0.59
TDP1-203ENST00000393454 KRT28Q7Z3Y7 464 aa11.34□□□□□ -0.59
TDP1-203ENST00000393454 PLEKHF1Q96S99 279 aa11.34□□□□□ -0.59
TDP1-203ENST00000393454 MAP3K19Q56UN5 1328 aa11.33□□□□□ -0.59
TDP1-203ENST00000393454 DCCP43146 1447 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 MST1RQ04912 1400 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 PRKAR2BP31323 418 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 SLFN5Q08AF3 891 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 HSP90AB2PQ58FF8 381 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 RCAN3Q9UKA8 241 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 DMRT2Q9Y5R5 561 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 IQSEC2Q5JU85 1478 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 KIF1AQ12756 1690 aa11.33□□□□□ -0.6
TDP1-203ENST00000393454 EIF4A2Q14240 407 aaKnown RBP11.32□□□□□ -0.6
TDP1-203ENST00000393454 RSPH6AQ9H0K4 717 aa11.32□□□□□ -0.6
TDP1-203ENST00000393454 E9PSI1 815 aa11.32□□□□□ -0.6
TDP1-203ENST00000393454 PEAK1Q9H792 1746 aa11.32□□□□□ -0.6
TDP1-203ENST00000393454 XIRP1Q702N8 1843 aaKnown RBP11.32□□□□□ -0.6
TDP1-203ENST00000393454 SBNO1A3KN83 1393 aa11.32□□□□□ -0.6
TDP1-203ENST00000393454 LRRC7Q96NW7 1537 aa11.31□□□□□ -0.6
TDP1-203ENST00000393454 ZBTB7CA1YPR0 619 aa11.31□□□□□ -0.6
TDP1-203ENST00000393454 TMPOP42166 694 aaKnown RBP11.31□□□□□ -0.6
TDP1-203ENST00000393454 DUSP27Q5VZP5 1158 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms