RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 CD163L1Q9NR16 1453 aa24.03■■□□□ 1.44
CBX1-202ENST00000393408 PREX1Q8TCU6 1659 aa24.03■■□□□ 1.44
CBX1-202ENST00000393408 U2SURPO15042 1029 aaKnown RBP24.03■■□□□ 1.44
CBX1-202ENST00000393408 FTSJ3Q8IY81 847 aaKnown RBP24.03■■□□□ 1.44
CBX1-202ENST00000393408 EXOSC9Q06265 439 aaKnown RBP24.02■■□□□ 1.44
CBX1-202ENST00000393408 TBC1D32Q96NH3 1257 aa24.02■■□□□ 1.44
CBX1-202ENST00000393408 FYB1O15117 783 aa24.01■■□□□ 1.43
CBX1-202ENST00000393408 UPF2Q9HAU5 1272 aaKnown RBP24.01■■□□□ 1.43
CBX1-202ENST00000393408 SMC4Q9NTJ3 1288 aa24.01■■□□□ 1.43
CBX1-202ENST00000393408 TERF2IPQ9NYB0 399 aa24■■□□□ 1.43
CBX1-202ENST00000393408 IL16Q14005 1332 aa24■■□□□ 1.43
CBX1-202ENST00000393408 YTHDC2Q9H6S0 1430 aaKnown RBP23.99■■□□□ 1.43
CBX1-202ENST00000393408 TRIM27P14373 513 aa23.99■■□□□ 1.43
CBX1-202ENST00000393408 MINK1Q8N4C8 1332 aaPredicted RBP23.98■■□□□ 1.43
CBX1-202ENST00000393408 SSH1Q8WYL5 1049 aa23.98■■□□□ 1.43
CBX1-202ENST00000393408 PRAM1Q96QH2 718 aa23.98■■□□□ 1.43
CBX1-202ENST00000393408 YEATS2Q9ULM3 1422 aa23.97■■□□□ 1.43
CBX1-202ENST00000393408 BRPF3Q9ULD4 1205 aa23.96■■□□□ 1.43
CBX1-202ENST00000393408 KIF20BQ96Q89 1820 aa23.96■■□□□ 1.43
CBX1-202ENST00000393408 HDAC1Q13547 482 aaPredicted RBP23.96■■□□□ 1.43
CBX1-202ENST00000393408 SENP3Q9H4L4 574 aaPredicted RBP23.96■■□□□ 1.43
CBX1-202ENST00000393408 PNPLA6Q8IY17 1366 aa23.95■■□□□ 1.42
CBX1-202ENST00000393408 ATF7IPQ6VMQ6 1270 aa23.95■■□□□ 1.42
CBX1-202ENST00000393408 DDX19BQ9UMR2 479 aa23.95■■□□□ 1.42
CBX1-202ENST00000393408 ANTXR1Q9H6X2 564 aa23.94■■□□□ 1.42
CBX1-202ENST00000393408 POGKQ9P215 609 aa23.94■■□□□ 1.42
CBX1-202ENST00000393408 DIAPH1O60610 1272 aaKnown RBP23.93■■□□□ 1.42
CBX1-202ENST00000393408 RIPK4P57078 832 aa23.93■■□□□ 1.42
CBX1-202ENST00000393408 RTN4Q9NQC3 1192 aaKnown RBP23.93■■□□□ 1.42
CBX1-202ENST00000393408 CDC42BPGQ6DT37 1551 aa23.92■■□□□ 1.42
CBX1-202ENST00000393408 SLKQ9H2G2 1235 aaPredicted RBP23.92■■□□□ 1.42
CBX1-202ENST00000393408 ALKQ9UM73 1620 aa23.92■■□□□ 1.42
CBX1-202ENST00000393408 ARHGEF40Q8TER5 1519 aa23.92■■□□□ 1.42
CBX1-202ENST00000393408 ITPRIPQ8IWB1 547 aa23.92■■□□□ 1.42
CBX1-202ENST00000393408 NOB1Q9ULX3 412 aaKnown RBP23.92■■□□□ 1.42
CBX1-202ENST00000393408 TBC1D2Q9BYX2 928 aa23.91■■□□□ 1.42
CBX1-202ENST00000393408 HDGFL2Q7Z4V5 671 aaPredicted RBP23.91■■□□□ 1.42
CBX1-202ENST00000393408 PNNQ9H307 717 aaKnown RBP23.9■■□□□ 1.42
CBX1-202ENST00000393408 LRRC7Q96NW7 1537 aa23.89■■□□□ 1.41
CBX1-202ENST00000393408 SMC5Q8IY18 1101 aa23.89■■□□□ 1.41
CBX1-202ENST00000393408 CDK19Q9BWU1 502 aa23.89■■□□□ 1.41
CBX1-202ENST00000393408 TMEM57Q8N5G2 664 aa23.88■■□□□ 1.41
CBX1-202ENST00000393408 KIF16BQ96L93 1317 aa23.88■■□□□ 1.41
CBX1-202ENST00000393408 ZBTB40Q9NUA8 1239 aa23.87■■□□□ 1.41
CBX1-202ENST00000393408 CABP1Q9NZU7 370 aa23.86■■□□□ 1.41
CBX1-202ENST00000393408 FCHSD2O94868 740 aa23.85■■□□□ 1.41
CBX1-202ENST00000393408 IPO8O15397 1037 aaKnown RBP23.85■■□□□ 1.41
CBX1-202ENST00000393408 ALDH1L2Q3SY69 923 aa23.85■■□□□ 1.41
CBX1-202ENST00000393408 FAM135BQ49AJ0 1406 aa23.84■■□□□ 1.41
CBX1-202ENST00000393408 FBXO31Q5XUX0 539 aaPredicted RBP23.84■■□□□ 1.41
CBX1-202ENST00000393408 C22orf23Q9BZE7 217 aa23.83■■□□□ 1.41
CBX1-202ENST00000393408 RSPH6AQ9H0K4 717 aa23.82■■□□□ 1.4
CBX1-202ENST00000393408 DLC1Q96QB1 1528 aa23.82■■□□□ 1.4
CBX1-202ENST00000393408 PPIP5K1Q6PFW1 1433 aa23.81■■□□□ 1.4
CBX1-202ENST00000393408 ATP7BP35670 1465 aa23.81■■□□□ 1.4
CBX1-202ENST00000393408 MFAP1P55081 439 aaKnown RBP23.81■■□□□ 1.4
CBX1-202ENST00000393408 POLKQ9UBT6 870 aa23.8■■□□□ 1.4
CBX1-202ENST00000393408 PRKAR2BP31323 418 aa23.8■■□□□ 1.4
CBX1-202ENST00000393408 BRPF1P55201 1214 aaPredicted RBP23.8■■□□□ 1.4
CBX1-202ENST00000393408 MAP2P11137 1827 aaKnown RBP23.8■■□□□ 1.4
CBX1-202ENST00000393408 ZNF428Q96B54 188 aa23.78■■□□□ 1.4
CBX1-202ENST00000393408 SETD1AO15047 1707 aaKnown RBP23.78■■□□□ 1.4
CBX1-202ENST00000393408 NUCB1Q02818 461 aa23.78■■□□□ 1.4
CBX1-202ENST00000393408 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.77■■□□□ 1.4
CBX1-202ENST00000393408 RIMBP3CA6NJZ7 1639 aa23.76■■□□□ 1.39
CBX1-202ENST00000393408 RIMBP3BA6NNM3 1639 aa23.76■■□□□ 1.39
CBX1-202ENST00000393408 RIMBP3Q9UFD9 1639 aa23.76■■□□□ 1.39
CBX1-202ENST00000393408 FBLN1P23142 703 aa23.75■■□□□ 1.39
CBX1-202ENST00000393408 NFE2L2Q16236 605 aa23.75■■□□□ 1.39
CBX1-202ENST00000393408 STAG3Q9UJ98 1225 aa23.75■■□□□ 1.39
CBX1-202ENST00000393408 PHACTR3Q96KR7 559 aa23.74■■□□□ 1.39
CBX1-202ENST00000393408 WAPLQ7Z5K2 1190 aa23.73■■□□□ 1.39
CBX1-202ENST00000393408 A2ML1A8K2U0 1454 aa23.73■■□□□ 1.39
CBX1-202ENST00000393408 SPRYD3Q8NCJ5 442 aa23.72■■□□□ 1.39
CBX1-202ENST00000393408 PTCH1Q13635 1447 aa23.72■■□□□ 1.39
CBX1-202ENST00000393408 PIK3R4Q99570 1358 aa23.72■■□□□ 1.39
CBX1-202ENST00000393408 VAMP4O75379 141 aa23.71■■□□□ 1.39
CBX1-202ENST00000393408 CHD1LQ86WJ1 897 aa23.71■■□□□ 1.39
CBX1-202ENST00000393408 MRPL50Q8N5N7 158 aaKnown RBP23.71■■□□□ 1.39
CBX1-202ENST00000393408 LNPKQ9C0E8 428 aa23.71■■□□□ 1.39
CBX1-202ENST00000393408 HMOX1P09601 288 aa23.7■■□□□ 1.38
CBX1-202ENST00000393408 CALD1Q05682 793 aaKnown RBP23.7■■□□□ 1.38
CBX1-202ENST00000393408 ARHGAP45Q92619 1136 aa23.7■■□□□ 1.38
CBX1-202ENST00000393408 CHMP5Q9NZZ3 219 aa23.7■■□□□ 1.38
CBX1-202ENST00000393408 CPSF1Q10570 1443 aaKnown RBP23.7■■□□□ 1.38
CBX1-202ENST00000393408 ZBTB7BO15156 539 aaPredicted RBP23.7■■□□□ 1.38
CBX1-202ENST00000393408 EDC4Q6P2E9 1401 aaKnown RBP23.7■■□□□ 1.38
CBX1-202ENST00000393408 CDK12Q9NYV4 1490 aaPredicted RBP23.69■■□□□ 1.38
CBX1-202ENST00000393408 THUMPD2Q9BTF0 503 aaKnown RBP23.69■■□□□ 1.38
CBX1-202ENST00000393408 RIMS2Q9UQ26 1411 aa23.69■■□□□ 1.38
CBX1-202ENST00000393408 RBM25P49756 843 aaKnown RBP23.69■■□□□ 1.38
CBX1-202ENST00000393408 SPATA31D1Q6ZQQ2 1576 aa23.69■■□□□ 1.38
CBX1-202ENST00000393408 IFT57Q9NWB7 429 aa23.69■■□□□ 1.38
CBX1-202ENST00000393408 REREQ9P2R6 1566 aa23.69■■□□□ 1.38
CBX1-202ENST00000393408 MCM4P33991 863 aa23.68■■□□□ 1.38
CBX1-202ENST00000393408 IL13P35225 146 aa23.68■■□□□ 1.38
CBX1-202ENST00000393408 EMILIN1Q9Y6C2 1016 aa23.68■■□□□ 1.38
CBX1-202ENST00000393408 ZNF853P0CG23 659 aa23.68■■□□□ 1.38
CBX1-202ENST00000393408 GNAI1P63096 354 aa23.68■■□□□ 1.38
CBX1-202ENST00000393408 DLG5Q8TDM6 1919 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms