RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 A0A1W2PP64 1363 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 EID1Q9Y6B2 187 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 MAPK8IP3Q9UPT6 1336 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 CCDC27Q2M243 656 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 TXNDC2Q86VQ3 553 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 TMEM131LA2VDJ0 1609 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 TNRQ92752 1358 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 TAF7LQ5H9L4 462 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 DDRGK1Q96HY6 314 aa12.39□□□□□ -0.43
COL6A3-204ENST00000392003 ABCC11Q96J66 1382 aa12.38□□□□□ -0.43
COL6A3-204ENST00000392003 PNNQ9H307 717 aaKnown RBP12.38□□□□□ -0.43
COL6A3-204ENST00000392003 PPM1GO15355 546 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-204ENST00000392003 RGS3P49796 1198 aa12.38□□□□□ -0.43
COL6A3-204ENST00000392003 RTL5Q5HYW3 569 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-204ENST00000392003 MYO5BQ9ULV0 1848 aa12.37□□□□□ -0.43
COL6A3-204ENST00000392003 CABP1Q9NZU7 370 aa12.37□□□□□ -0.43
COL6A3-204ENST00000392003 AGLP35573 1532 aa12.37□□□□□ -0.43
COL6A3-204ENST00000392003 SHPRHQ149N8 1683 aa12.37□□□□□ -0.43
COL6A3-204ENST00000392003 NEFMP07197 916 aa12.37□□□□□ -0.43
COL6A3-204ENST00000392003 SKAP1Q86WV1 359 aa12.37□□□□□ -0.43
COL6A3-204ENST00000392003 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL6A3-204ENST00000392003 RSPH6AQ9H0K4 717 aa12.36□□□□□ -0.43
COL6A3-204ENST00000392003 COG6Q9Y2V7 657 aa12.36□□□□□ -0.43
COL6A3-204ENST00000392003 FAM161AQ3B820 660 aa12.36□□□□□ -0.43
COL6A3-204ENST00000392003 RARSP54136 660 aaKnown RBP12.36□□□□□ -0.43
COL6A3-204ENST00000392003 PTPRMP28827 1452 aa12.36□□□□□ -0.43
COL6A3-204ENST00000392003 PANK1Q8TE04 598 aa12.35□□□□□ -0.43
COL6A3-204ENST00000392003 CLUAP1Q96AJ1 413 aa12.35□□□□□ -0.43
COL6A3-204ENST00000392003 FYB1O15117 783 aa12.35□□□□□ -0.43
COL6A3-204ENST00000392003 PHF23Q9BUL5 403 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-204ENST00000392003 ALKQ9UM73 1620 aa12.34□□□□□ -0.43
COL6A3-204ENST00000392003 IQSEC2Q5JU85 1478 aa12.34□□□□□ -0.43
COL6A3-204ENST00000392003 DIAPH1O60610 1272 aaKnown RBP12.34□□□□□ -0.43
COL6A3-204ENST00000392003 NUTM2FA1L443 756 aa12.34□□□□□ -0.43
COL6A3-204ENST00000392003 SLC26A8Q96RN1 970 aa12.34□□□□□ -0.43
COL6A3-204ENST00000392003 PMFBP1Q8TBY8 1022 aa12.33□□□□□ -0.44
COL6A3-204ENST00000392003 A2ML1A8K2U0 1454 aa12.32□□□□□ -0.44
COL6A3-204ENST00000392003 CLTCQ00610 1675 aaKnown RBP12.32□□□□□ -0.44
COL6A3-204ENST00000392003 CT47B1P0C2W7 299 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-204ENST00000392003 BCL2L13Q9BXK5 485 aa12.32□□□□□ -0.44
COL6A3-204ENST00000392003 CHMP4BQ9H444 224 aaKnown RBP12.32□□□□□ -0.44
COL6A3-204ENST00000392003 REREQ9P2R6 1566 aa12.32□□□□□ -0.44
COL6A3-204ENST00000392003 TMPOP42166 694 aaKnown RBP12.32□□□□□ -0.44
COL6A3-204ENST00000392003 FTSJ3Q8IY81 847 aaKnown RBP12.31□□□□□ -0.44
COL6A3-204ENST00000392003 ARHGEF40Q8TER5 1519 aa12.31□□□□□ -0.44
COL6A3-204ENST00000392003 MED14O60244 1454 aa12.31□□□□□ -0.44
COL6A3-204ENST00000392003 THEMISQ8N1K5 641 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-204ENST00000392003 ZKSCAN2Q63HK3 967 aa12.3□□□□□ -0.44
COL6A3-204ENST00000392003 WASLO00401 505 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-204ENST00000392003 RIPK4P57078 832 aa12.3□□□□□ -0.44
COL6A3-204ENST00000392003 IGHDP01880 384 aa12.29□□□□□ -0.44
COL6A3-204ENST00000392003 SMC4Q9NTJ3 1288 aa12.29□□□□□ -0.44
COL6A3-204ENST00000392003 RWDD1Q9H446 243 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-204ENST00000392003 TSR2Q969E8 191 aaKnown RBP12.28□□□□□ -0.44
COL6A3-204ENST00000392003 NUDT16Q96DE0 195 aaKnown RBP12.28□□□□□ -0.44
COL6A3-204ENST00000392003 IL16Q14005 1332 aa12.28□□□□□ -0.44
COL6A3-204ENST00000392003 SPATA31D1Q6ZQQ2 1576 aa12.28□□□□□ -0.44
COL6A3-204ENST00000392003 TMEM2Q9UHN6 1383 aa12.28□□□□□ -0.44
COL6A3-204ENST00000392003 EXOSC9Q06265 439 aaKnown RBP12.28□□□□□ -0.44
COL6A3-204ENST00000392003 PLEKHF1Q96S99 279 aa12.28□□□□□ -0.44
COL6A3-204ENST00000392003 DLC1Q96QB1 1528 aa12.28□□□□□ -0.44
COL6A3-204ENST00000392003 FCHSD2O94868 740 aa12.27□□□□□ -0.44
COL6A3-204ENST00000392003 DZIP1LQ8IYY4 767 aaKnown RBP12.27□□□□□ -0.44
COL6A3-204ENST00000392003 CCDC61Q9Y6R9 512 aa12.27□□□□□ -0.44
COL6A3-204ENST00000392003 METP08581 1390 aa12.27□□□□□ -0.44
COL6A3-204ENST00000392003 CD163L1Q9NR16 1453 aa12.27□□□□□ -0.45
COL6A3-204ENST00000392003 LTKP29376 864 aa12.27□□□□□ -0.45
COL6A3-204ENST00000392003 C8orf34Q49A92 452 aa12.27□□□□□ -0.45
COL6A3-204ENST00000392003 CHMP4AQ9BY43 222 aa12.27□□□□□ -0.45
COL6A3-204ENST00000392003 LAS1LQ9Y4W2 734 aaKnown RBP12.27□□□□□ -0.45
COL6A3-204ENST00000392003 ANKRD26Q9UPS8 1709 aa12.26□□□□□ -0.45
COL6A3-204ENST00000392003 ATP7BP35670 1465 aa12.26□□□□□ -0.45
COL6A3-204ENST00000392003 ADGRB2O60241 1585 aa12.26□□□□□ -0.45
COL6A3-204ENST00000392003 NAP1L2Q9ULW6 460 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-204ENST00000392003 KIF13AQ9H1H9 1805 aa12.26□□□□□ -0.45
COL6A3-204ENST00000392003 IPO8O15397 1037 aaKnown RBP12.25□□□□□ -0.45
COL6A3-204ENST00000392003 RLBP1P12271 317 aa12.25□□□□□ -0.45
COL6A3-204ENST00000392003 MVPQ14764 893 aaKnown RBP12.25□□□□□ -0.45
COL6A3-204ENST00000392003 TRIM35Q9UPQ4 493 aa12.25□□□□□ -0.45
COL6A3-204ENST00000392003 CALD1Q05682 793 aaKnown RBP12.25□□□□□ -0.45
COL6A3-204ENST00000392003 COG3Q96JB2 828 aa12.25□□□□□ -0.45
COL6A3-204ENST00000392003 COL3A1P02461 1466 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-204ENST00000392003 SOX12O15370 315 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 PRKAR2BP31323 418 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 ARXQ96QS3 562 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 TNNQ9UQP3 1299 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 PNPLA6Q8IY17 1366 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 POLKQ9UBT6 870 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 AMOTL2Q9Y2J4 779 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 NLRP1Q9C000 1473 aa12.24□□□□□ -0.45
COL6A3-204ENST00000392003 PPIP5K1Q6PFW1 1433 aa12.23□□□□□ -0.45
COL6A3-204ENST00000392003 NCKAP5LQ9HCH0 1330 aa12.23□□□□□ -0.45
COL6A3-204ENST00000392003 KIF20BQ96Q89 1820 aa12.23□□□□□ -0.45
COL6A3-204ENST00000392003 UPF2Q9HAU5 1272 aaKnown RBP12.23□□□□□ -0.45
COL6A3-204ENST00000392003 DDX19BQ9UMR2 479 aa12.23□□□□□ -0.45
COL6A3-204ENST00000392003 PCDHB15Q9Y5E8 787 aa12.23□□□□□ -0.45
COL6A3-204ENST00000392003 EDC4Q6P2E9 1401 aaKnown RBP12.23□□□□□ -0.45
COL6A3-204ENST00000392003 ITPRIPQ8IWB1 547 aa12.23□□□□□ -0.45
COL6A3-204ENST00000392003 KIF16BQ96L93 1317 aa12.22□□□□□ -0.45
COL6A3-204ENST00000392003 FBLN1P23142 703 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms