RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HSPA2P54652 639 aa24.2■■□□□ 1.46
CCDC88C-203ENST00000389856 NGDNQ8NEJ9 315 aaKnown RBP24.2■■□□□ 1.46
CCDC88C-203ENST00000389856 RGPD8O14715 1765 aaPredicted RBP24.2■■□□□ 1.46
CCDC88C-203ENST00000389856 TTC21AQ8NDW8 1320 aa24.19■■□□□ 1.46
CCDC88C-203ENST00000389856 MTHFSP49914 203 aa24.18■■□□□ 1.46
CCDC88C-203ENST00000389856 COG3Q96JB2 828 aa24.18■■□□□ 1.46
CCDC88C-203ENST00000389856 TTC21BQ7Z4L5 1316 aa24.16■■□□□ 1.46
CCDC88C-203ENST00000389856 STRCQ7RTU9 1775 aa24.15■■□□□ 1.46
CCDC88C-203ENST00000389856 ADAMTS8Q9UP79 889 aa24.14■■□□□ 1.46
CCDC88C-203ENST00000389856 AATKQ6ZMQ8 1374 aa24.13■■□□□ 1.45
CCDC88C-203ENST00000389856 DCCP43146 1447 aa24.13■■□□□ 1.45
CCDC88C-203ENST00000389856 NME9Q86XW9 330 aa24.13■■□□□ 1.45
CCDC88C-203ENST00000389856 C19orf44Q9H6X5 657 aa24.13■■□□□ 1.45
CCDC88C-203ENST00000389856 NUDCQ9Y266 331 aa24.13■■□□□ 1.45
CCDC88C-203ENST00000389856 NGEFQ8N5V2 710 aa24.12■■□□□ 1.45
CCDC88C-203ENST00000389856 PMFBP1Q8TBY8 1022 aa24.12■■□□□ 1.45
CCDC88C-203ENST00000389856 PHF8Q9UPP1 1060 aa24.12■■□□□ 1.45
CCDC88C-203ENST00000389856 SHPRHQ149N8 1683 aa24.12■■□□□ 1.45
CCDC88C-203ENST00000389856 SSH2Q76I76 1423 aa24.11■■□□□ 1.45
CCDC88C-203ENST00000389856 DMRT2Q9Y5R5 561 aa24.1■■□□□ 1.45
CCDC88C-203ENST00000389856 PDE3BQ13370 1112 aa24.1■■□□□ 1.45
CCDC88C-203ENST00000389856 KIF1AQ12756 1690 aa24.08■■□□□ 1.45
CCDC88C-203ENST00000389856 STRCP1A6NGW2 1772 aa24.08■■□□□ 1.44
CCDC88C-203ENST00000389856 OVOS2A0A0J9YW53 1432 aa24.07■■□□□ 1.44
CCDC88C-203ENST00000389856 OVOS2Q6IE36 1432 aa24.07■■□□□ 1.44
CCDC88C-203ENST00000389856 SMG6Q86US8 1419 aaKnown RBP24.07■■□□□ 1.44
CCDC88C-203ENST00000389856 MAP2P11137 1827 aaKnown RBP24.07■■□□□ 1.44
CCDC88C-203ENST00000389856 TMEM94Q12767 1356 aa24.07■■□□□ 1.44
CCDC88C-203ENST00000389856 ATF3P18847 181 aa24.06■■□□□ 1.44
CCDC88C-203ENST00000389856 CDK12Q9NYV4 1490 aaPredicted RBP24.06■■□□□ 1.44
CCDC88C-203ENST00000389856 RBM33Q96EV2 1170 aaKnown RBP24.06■■□□□ 1.44
CCDC88C-203ENST00000389856 USP31Q70CQ4 1352 aa24.05■■□□□ 1.44
CCDC88C-203ENST00000389856 PNPLA6Q8IY17 1366 aa24.05■■□□□ 1.44
CCDC88C-203ENST00000389856 ESCO1Q5FWF5 840 aa24.05■■□□□ 1.44
CCDC88C-203ENST00000389856 PNNQ9H307 717 aaKnown RBP24.05■■□□□ 1.44
CCDC88C-203ENST00000389856 LRRC7Q96NW7 1537 aa24.04■■□□□ 1.44
CCDC88C-203ENST00000389856 USP54Q70EL1 1684 aa24.04■■□□□ 1.44
CCDC88C-203ENST00000389856 COL3A1P02461 1466 aaPredicted RBP24.04■■□□□ 1.44
CCDC88C-203ENST00000389856 MSH6P52701 1360 aa24.03■■□□□ 1.44
CCDC88C-203ENST00000389856 DIAPH1O60610 1272 aaKnown RBP24.02■■□□□ 1.44
CCDC88C-203ENST00000389856 CADPS2Q86UW7 1296 aa24.02■■□□□ 1.44
CCDC88C-203ENST00000389856 POLKQ9UBT6 870 aa24.02■■□□□ 1.44
CCDC88C-203ENST00000389856 PIK3C2AO00443 1686 aa24■■□□□ 1.43
CCDC88C-203ENST00000389856 PSME1Q06323 249 aa24■■□□□ 1.43
CCDC88C-203ENST00000389856 RUNDC1Q96C34 613 aa24■■□□□ 1.43
CCDC88C-203ENST00000389856 U2AF1L5P0DN76 240 aaPredicted RBP23.99■■□□□ 1.43
CCDC88C-203ENST00000389856 U2AF1Q01081 240 aaKnown RBP eCLIP23.99■■□□□ 1.43
CCDC88C-203ENST00000389856 C1orf167Q5SNV9 1468 aa23.99■■□□□ 1.43
CCDC88C-203ENST00000389856 ZRANB1Q9UGI0 708 aa23.98■■□□□ 1.43
CCDC88C-203ENST00000389856 PPM1GO15355 546 aaPredicted RBP23.97■■□□□ 1.43
CCDC88C-203ENST00000389856 U2SURPO15042 1029 aaKnown RBP23.96■■□□□ 1.43
CCDC88C-203ENST00000389856 NCBP3Q53F19 620 aaKnown RBP23.96■■□□□ 1.43
CCDC88C-203ENST00000389856 PAK3O75914 559 aaPredicted RBP23.95■■□□□ 1.43
CCDC88C-203ENST00000389856 CCDC146Q8IYE0 955 aa23.95■■□□□ 1.43
CCDC88C-203ENST00000389856 MST1RQ04912 1400 aa23.95■■□□□ 1.43
CCDC88C-203ENST00000389856 NLRP6P59044 892 aa23.95■■□□□ 1.42
CCDC88C-203ENST00000389856 ABTB2Q8N961 1025 aa23.95■■□□□ 1.42
CCDC88C-203ENST00000389856 NEFMP07197 916 aa23.94■■□□□ 1.42
CCDC88C-203ENST00000389856 KIF24Q5T7B8 1368 aa23.94■■□□□ 1.42
CCDC88C-203ENST00000389856 TSHZ2Q9NRE2 1034 aa23.93■■□□□ 1.42
CCDC88C-203ENST00000389856 SALL2Q9Y467 1007 aaPredicted RBP23.93■■□□□ 1.42
CCDC88C-203ENST00000389856 EMILIN1Q9Y6C2 1016 aa23.93■■□□□ 1.42
CCDC88C-203ENST00000389856 APAF1O14727 1248 aa23.92■■□□□ 1.42
CCDC88C-203ENST00000389856 XIRP1Q702N8 1843 aaKnown RBP23.92■■□□□ 1.42
CCDC88C-203ENST00000389856 ORAI2Q96SN7 254 aa23.92■■□□□ 1.42
CCDC88C-203ENST00000389856 MAPK8IP3Q9UPT6 1336 aa23.91■■□□□ 1.42
CCDC88C-203ENST00000389856 PPP4R2Q9NY27 417 aa23.91■■□□□ 1.42
CCDC88C-203ENST00000389856 RRS1Q15050 365 aaKnown RBP23.9■■□□□ 1.42
CCDC88C-203ENST00000389856 FCHSD2O94868 740 aa23.89■■□□□ 1.42
CCDC88C-203ENST00000389856 ZNF335Q9H4Z2 1342 aaPredicted RBP23.89■■□□□ 1.41
CCDC88C-203ENST00000389856 IQSEC2Q5JU85 1478 aa23.89■■□□□ 1.41
CCDC88C-203ENST00000389856 SBNO1A3KN83 1393 aa23.89■■□□□ 1.41
CCDC88C-203ENST00000389856 GOLGA2Q08379 1002 aa23.88■■□□□ 1.41
CCDC88C-203ENST00000389856 FLT4P35916 1363 aa23.88■■□□□ 1.41
CCDC88C-203ENST00000389856 KCNH5Q8NCM2 988 aa23.88■■□□□ 1.41
CCDC88C-203ENST00000389856 MARF1Q9Y4F3 1742 aaKnown RBP23.87■■□□□ 1.41
CCDC88C-203ENST00000389856 FOXO3O43524 673 aa23.87■■□□□ 1.41
CCDC88C-203ENST00000389856 RNF123Q5XPI4 1314 aa23.87■■□□□ 1.41
CCDC88C-203ENST00000389856 SENP3-EIF4A1A0A087X0R7 540 aa23.86■■□□□ 1.41
CCDC88C-203ENST00000389856 IL13P35225 146 aa23.86■■□□□ 1.41
CCDC88C-203ENST00000389856 TCP11L2Q8N4U5 519 aa23.86■■□□□ 1.41
CCDC88C-203ENST00000389856 TRPM3Q9HCF6 1732 aaPredicted RBP23.86■■□□□ 1.41
CCDC88C-203ENST00000389856 NPHP3Q7Z494 1330 aa23.86■■□□□ 1.41
CCDC88C-203ENST00000389856 ZNF521Q96K83 1311 aa23.86■■□□□ 1.41
CCDC88C-203ENST00000389856 FBLN1P23142 703 aa23.85■■□□□ 1.41
CCDC88C-203ENST00000389856 CCDC27Q2M243 656 aa23.85■■□□□ 1.41
CCDC88C-203ENST00000389856 KRT28Q7Z3Y7 464 aa23.85■■□□□ 1.41
CCDC88C-203ENST00000389856 AMPHP49418 695 aa23.84■■□□□ 1.41
CCDC88C-203ENST00000389856 RTL1A6NKG5 1358 aa23.84■■□□□ 1.41
CCDC88C-203ENST00000389856 MAP3K19Q56UN5 1328 aa23.84■■□□□ 1.41
CCDC88C-203ENST00000389856 PEAK1Q9H792 1746 aa23.82■■□□□ 1.4
CCDC88C-203ENST00000389856 SOX12O15370 315 aa23.81■■□□□ 1.4
CCDC88C-203ENST00000389856 E9PSI1 815 aa23.81■■□□□ 1.4
CCDC88C-203ENST00000389856 PLEKHF1Q96S99 279 aa23.81■■□□□ 1.4
CCDC88C-203ENST00000389856 NUTM2GQ5VZR2 741 aa23.8■■□□□ 1.4
CCDC88C-203ENST00000389856 WDR63Q8IWG1 891 aa23.8■■□□□ 1.4
CCDC88C-203ENST00000389856 SLIT3O75094 1523 aa23.79■■□□□ 1.4
CCDC88C-203ENST00000389856 ALS2Q96Q42 1657 aa23.78■■□□□ 1.4
CCDC88C-203ENST00000389856 WWC1Q8IX03 1113 aa23.78■■□□□ 1.4
CCDC88C-203ENST00000389856 RSPH6AQ9H0K4 717 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms