RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 MBD3O95983 291 aa17.33■□□□□ 0.36
RTF1-201ENST00000389629 TWISTNBQ3B726 338 aaPredicted RBP17.33■□□□□ 0.36
RTF1-201ENST00000389629 ARHGEF12Q9NZN5 1544 aa17.33■□□□□ 0.36
RTF1-201ENST00000389629 SCAF11Q99590 1463 aaKnown RBP17.33■□□□□ 0.36
RTF1-201ENST00000389629 DIAPH3Q9NSV4 1193 aa17.32■□□□□ 0.36
RTF1-201ENST00000389629 ATP6V1DQ9Y5K8 247 aa17.32■□□□□ 0.36
RTF1-201ENST00000389629 GPRASP1Q5JY77 1395 aa17.32■□□□□ 0.36
RTF1-201ENST00000389629 HMGN5P82970 282 aaKnown RBP17.31■□□□□ 0.36
RTF1-201ENST00000389629 SPC24Q8NBT2 197 aa17.31■□□□□ 0.36
RTF1-201ENST00000389629 NECTIN2Q92692 538 aa17.31■□□□□ 0.36
RTF1-201ENST00000389629 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
RTF1-201ENST00000389629 VPS37CA5D8V6 355 aaPredicted RBP17.31■□□□□ 0.36
RTF1-201ENST00000389629 SAMD9Q5K651 1589 aa17.31■□□□□ 0.36
RTF1-201ENST00000389629 CBX1P83916 185 aa17.31■□□□□ 0.36
RTF1-201ENST00000389629 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.3■□□□□ 0.36
RTF1-201ENST00000389629 CCDC27Q2M243 656 aa17.3■□□□□ 0.36
RTF1-201ENST00000389629 ZMYM4Q5VZL5 1548 aa17.3■□□□□ 0.36
RTF1-201ENST00000389629 ASXL1Q8IXJ9 1541 aa17.3■□□□□ 0.36
RTF1-201ENST00000389629 GOLGA6L19H0YKK7 550 aa17.3■□□□□ 0.36
RTF1-201ENST00000389629 THUMPD2Q9BTF0 503 aaKnown RBP17.3■□□□□ 0.36
RTF1-201ENST00000389629 COL17A1Q9UMD9 1497 aaPredicted RBP17.3■□□□□ 0.36
RTF1-201ENST00000389629 BLMP54132 1417 aaPredicted RBP17.29■□□□□ 0.36
RTF1-201ENST00000389629 FAM135AQ9P2D6 1515 aa17.29■□□□□ 0.36
RTF1-201ENST00000389629 BECN2A8MW95 431 aa17.28■□□□□ 0.36
RTF1-201ENST00000389629 HTATSF1O43719 755 aaKnown RBP17.28■□□□□ 0.36
RTF1-201ENST00000389629 HSP90B1P14625 803 aaKnown RBP17.27■□□□□ 0.36
RTF1-201ENST00000389629 LMOD2Q6P5Q4 547 aa17.27■□□□□ 0.36
RTF1-201ENST00000389629 FIBPO43427 364 aa17.26■□□□□ 0.35
RTF1-201ENST00000389629 SMC3Q9UQE7 1217 aa17.26■□□□□ 0.35
RTF1-201ENST00000389629 PRAM1Q96QH2 718 aa17.26■□□□□ 0.35
RTF1-201ENST00000389629 ITSN2Q9NZM3 1697 aa17.26■□□□□ 0.35
RTF1-201ENST00000389629 MAPK8IP2Q13387 824 aaPredicted RBP17.26■□□□□ 0.35
RTF1-201ENST00000389629 NPHP1O15259 732 aa17.25■□□□□ 0.35
RTF1-201ENST00000389629 FKBP5Q13451 457 aaPredicted RBP17.25■□□□□ 0.35
RTF1-201ENST00000389629 LTV1Q96GA3 475 aaPredicted RBP17.25■□□□□ 0.35
RTF1-201ENST00000389629 CWC22Q9HCG8 908 aaKnown RBP17.25■□□□□ 0.35
RTF1-201ENST00000389629 AMPHP49418 695 aa17.25■□□□□ 0.35
RTF1-201ENST00000389629 FBXW7Q969H0 707 aa17.24■□□□□ 0.35
RTF1-201ENST00000389629 CARD14Q9BXL6 1004 aa17.24■□□□□ 0.35
RTF1-201ENST00000389629 HDGFP51858 240 aaKnown RBP17.24■□□□□ 0.35
RTF1-201ENST00000389629 CABP1Q9NZU7 370 aa17.24■□□□□ 0.35
RTF1-201ENST00000389629 RBM27Q9P2N5 1060 aaKnown RBP17.24■□□□□ 0.35
RTF1-201ENST00000389629 SASS6Q6UVJ0 657 aa17.23■□□□□ 0.35
RTF1-201ENST00000389629 TBC1D9Q6ZT07 1266 aa17.23■□□□□ 0.35
RTF1-201ENST00000389629 KDM5BQ9UGL1 1544 aa17.23■□□□□ 0.35
RTF1-201ENST00000389629 BAG4O95429 457 aaKnown RBP17.23■□□□□ 0.35
RTF1-201ENST00000389629 CCAR2Q8N163 923 aaKnown RBP17.23■□□□□ 0.35
RTF1-201ENST00000389629 BICD2Q8TD16 824 aa17.23■□□□□ 0.35
RTF1-201ENST00000389629 DENND4BO75064 1496 aaPredicted RBP17.23■□□□□ 0.35
RTF1-201ENST00000389629 KDM5CP41229 1560 aa17.23■□□□□ 0.35
RTF1-201ENST00000389629 PIK3C2GO75747 1445 aa17.23■□□□□ 0.35
RTF1-201ENST00000389629 KIF3AQ9Y496 699 aa17.23■□□□□ 0.35
RTF1-201ENST00000389629 ATP10BO94823 1461 aa17.22■□□□□ 0.35
RTF1-201ENST00000389629 HDAC1Q13547 482 aaPredicted RBP17.22■□□□□ 0.35
RTF1-201ENST00000389629 ERC2O15083 957 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 NUP160Q12769 1436 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 A2MP01023 1474 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 BMP2KLQ5H9B9 411 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 GPATCH3Q96I76 525 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 RBM42Q9BTD8 480 aaKnown RBP17.21■□□□□ 0.35
RTF1-201ENST00000389629 TSPYL4Q9UJ04 414 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 H3BQV1 296 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 IFFO2Q5TF58 517 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 TRIM5Q9C035 493 aa17.21■□□□□ 0.35
RTF1-201ENST00000389629 TPD52L1Q16890 204 aaPredicted RBP17.21■□□□□ 0.34
RTF1-201ENST00000389629 GNL2Q13823 731 aaKnown RBP17.2■□□□□ 0.34
RTF1-201ENST00000389629 KIAA0556O60303 1618 aa17.2■□□□□ 0.34
RTF1-201ENST00000389629 PDCL2Q8N4E4 241 aa17.2■□□□□ 0.34
RTF1-201ENST00000389629 FCHSD2O94868 740 aa17.2■□□□□ 0.34
RTF1-201ENST00000389629 ADGRL2O95490 1459 aa17.2■□□□□ 0.34
RTF1-201ENST00000389629 TPM4P67936 248 aa17.19■□□□□ 0.34
RTF1-201ENST00000389629 KLHL40Q2TBA0 621 aa17.19■□□□□ 0.34
RTF1-201ENST00000389629 SMARCA5O60264 1052 aaPredicted RBP17.19■□□□□ 0.34
RTF1-201ENST00000389629 NUCB1Q02818 461 aa17.19■□□□□ 0.34
RTF1-201ENST00000389629 ALDH1L2Q3SY69 923 aa17.19■□□□□ 0.34
RTF1-201ENST00000389629 HOMER1Q86YM7 354 aa17.18■□□□□ 0.34
RTF1-201ENST00000389629 CDK19Q9BWU1 502 aa17.18■□□□□ 0.34
RTF1-201ENST00000389629 NGDNQ8NEJ9 315 aaKnown RBP17.18■□□□□ 0.34
RTF1-201ENST00000389629 EIF2S2P20042 333 aaKnown RBP17.18■□□□□ 0.34
RTF1-201ENST00000389629 SF3A1Q15459 793 aaKnown RBP17.18■□□□□ 0.34
RTF1-201ENST00000389629 INSRP06213 1382 aa17.18■□□□□ 0.34
RTF1-201ENST00000389629 SLC4A2P04920 1241 aa17.18■□□□□ 0.34
RTF1-201ENST00000389629 ZNF428Q96B54 188 aa17.18■□□□□ 0.34
RTF1-201ENST00000389629 NFE2L2Q16236 605 aa17.17■□□□□ 0.34
RTF1-201ENST00000389629 POLR3AO14802 1390 aaPredicted RBP17.17■□□□□ 0.34
RTF1-201ENST00000389629 ZSCAN23Q3MJ62 389 aa17.17■□□□□ 0.34
RTF1-201ENST00000389629 SPDYE4A6NLX3 237 aa17.17■□□□□ 0.34
RTF1-201ENST00000389629 MCM2P49736 904 aa17.17■□□□□ 0.34
RTF1-201ENST00000389629 GDPD2Q9HCC8 539 aa17.16■□□□□ 0.34
RTF1-201ENST00000389629 USP25Q9UHP3 1055 aa17.16■□□□□ 0.34
RTF1-201ENST00000389629 FAM184AQ8NB25 1140 aa17.16■□□□□ 0.34
RTF1-201ENST00000389629 DCTN1Q14203 1278 aa17.15■□□□□ 0.34
RTF1-201ENST00000389629 FOSBP53539 338 aa17.15■□□□□ 0.34
RTF1-201ENST00000389629 BCORL1Q5H9F3 1711 aa17.15■□□□□ 0.34
RTF1-201ENST00000389629 ZNF830Q96NB3 372 aaPredicted RBP17.15■□□□□ 0.34
RTF1-201ENST00000389629 OFD1O75665 1012 aa17.15■□□□□ 0.34
RTF1-201ENST00000389629 ABCC11Q96J66 1382 aa17.15■□□□□ 0.34
RTF1-201ENST00000389629 DISP1Q96F81 1524 aa17.15■□□□□ 0.34
RTF1-201ENST00000389629 ADAMTS12P58397 1594 aa17.15■□□□□ 0.34
RTF1-201ENST00000389629 ZKSCAN1P17029 563 aaPredicted RBP17.14■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms