RNA–Protein interactions for RNA: ENST00000381990.6

GPNMB-202, Transcript of glycoprotein nmb, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GPNMB, Length 2,763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-202ENST00000381990 CFAP53Q96M91 514 aa11.55□□□□□ -0.56
GPNMB-202ENST00000381990 PLIN1O60240 522 aa11.55□□□□□ -0.56
GPNMB-202ENST00000381990 MTHFSP49914 203 aa11.55□□□□□ -0.56
GPNMB-202ENST00000381990 FYB1O15117 783 aa11.54□□□□□ -0.56
GPNMB-202ENST00000381990 NGEFQ8N5V2 710 aa11.54□□□□□ -0.56
GPNMB-202ENST00000381990 ROBO2Q9HCK4 1378 aa11.54□□□□□ -0.56
GPNMB-202ENST00000381990 RIMS1Q86UR5 1692 aaKnown RBP11.54□□□□□ -0.56
GPNMB-202ENST00000381990 ZNF521Q96K83 1311 aa11.53□□□□□ -0.56
GPNMB-202ENST00000381990 KIF20BQ96Q89 1820 aa11.53□□□□□ -0.56
GPNMB-202ENST00000381990 GGNBP2Q9H3C7 697 aa11.53□□□□□ -0.56
GPNMB-202ENST00000381990 RTN4Q9NQC3 1192 aaKnown RBP11.53□□□□□ -0.56
GPNMB-202ENST00000381990 TBX22Q9Y458 520 aa11.53□□□□□ -0.56
GPNMB-202ENST00000381990 CCDC146Q8IYE0 955 aa11.53□□□□□ -0.56
GPNMB-202ENST00000381990 ADGRB2O60241 1585 aa11.53□□□□□ -0.56
GPNMB-202ENST00000381990 DIP2AQ14689 1571 aa11.53□□□□□ -0.56
GPNMB-202ENST00000381990 PPIP5K1Q6PFW1 1433 aa11.52□□□□□ -0.56
GPNMB-202ENST00000381990 CEP170BQ9Y4F5 1589 aaPredicted RBP11.52□□□□□ -0.56
GPNMB-202ENST00000381990 CPSF1Q10570 1443 aaKnown RBP11.52□□□□□ -0.57
GPNMB-202ENST00000381990 NUDT16Q96DE0 195 aaKnown RBP11.52□□□□□ -0.57
GPNMB-202ENST00000381990 SLC26A8Q96RN1 970 aa11.52□□□□□ -0.57
GPNMB-202ENST00000381990 APAF1O14727 1248 aa11.51□□□□□ -0.57
GPNMB-202ENST00000381990 C8orf34Q49A92 452 aa11.51□□□□□ -0.57
GPNMB-202ENST00000381990 CCDC61Q9Y6R9 512 aa11.51□□□□□ -0.57
GPNMB-202ENST00000381990 PTPRUQ92729 1446 aa11.51□□□□□ -0.57
GPNMB-202ENST00000381990 ADAMTSL3P82987 1691 aa11.51□□□□□ -0.57
GPNMB-202ENST00000381990 EDC4Q6P2E9 1401 aaKnown RBP11.51□□□□□ -0.57
GPNMB-202ENST00000381990 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.51□□□□□ -0.57
GPNMB-202ENST00000381990 GOLGA2Q08379 1002 aa11.5□□□□□ -0.57
GPNMB-202ENST00000381990 CDC42BPGQ6DT37 1551 aa11.5□□□□□ -0.57
GPNMB-202ENST00000381990 FRAT1Q92837 279 aaPredicted RBP11.5□□□□□ -0.57
GPNMB-202ENST00000381990 DUSP27Q5VZP5 1158 aa11.5□□□□□ -0.57
GPNMB-202ENST00000381990 BRPF3Q9ULD4 1205 aa11.5□□□□□ -0.57
GPNMB-202ENST00000381990 PTCH1Q13635 1447 aa11.49□□□□□ -0.57
GPNMB-202ENST00000381990 C20orf194Q5TEA3 1177 aa11.49□□□□□ -0.57
GPNMB-202ENST00000381990 RUNDC1Q96C34 613 aa11.49□□□□□ -0.57
GPNMB-202ENST00000381990 AMOTL2Q9Y2J4 779 aa11.49□□□□□ -0.57
GPNMB-202ENST00000381990 MON2Q7Z3U7 1717 aa11.49□□□□□ -0.57
GPNMB-202ENST00000381990 ZNF142P52746 1687 aaPredicted RBP11.48□□□□□ -0.57
GPNMB-202ENST00000381990 VIRMAQ69YN4 1812 aaKnown RBP11.48□□□□□ -0.57
GPNMB-202ENST00000381990 AKAP12Q02952 1782 aa11.48□□□□□ -0.57
GPNMB-202ENST00000381990 ITSN1Q15811 1721 aa11.48□□□□□ -0.57
GPNMB-202ENST00000381990 PRR36Q9H6K5 1346 aa11.48□□□□□ -0.57
GPNMB-202ENST00000381990 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.48□□□□□ -0.57
GPNMB-202ENST00000381990 SETD1BQ9UPS6 1966 aaKnown RBP11.48□□□□□ -0.57
GPNMB-202ENST00000381990 COL3A1P02461 1466 aaPredicted RBP11.47□□□□□ -0.57
GPNMB-202ENST00000381990 SLFN5Q08AF3 891 aa11.47□□□□□ -0.57
GPNMB-202ENST00000381990 PIK3R4Q99570 1358 aa11.47□□□□□ -0.57
GPNMB-202ENST00000381990 XRN1Q8IZH2 1706 aaKnown RBP11.47□□□□□ -0.57
GPNMB-202ENST00000381990 ZNF692Q9BU19 519 aaPredicted RBP11.47□□□□□ -0.57
GPNMB-202ENST00000381990 IQSEC2Q5JU85 1478 aa11.47□□□□□ -0.57
GPNMB-202ENST00000381990 TOPAZ1Q8N9V7 1692 aa11.46□□□□□ -0.57
GPNMB-202ENST00000381990 TRMT2AQ8IZ69 625 aaKnown RBP11.46□□□□□ -0.57
GPNMB-202ENST00000381990 PNPLA6Q8IY17 1366 aa11.46□□□□□ -0.58
GPNMB-202ENST00000381990 NCKAP5LQ9HCH0 1330 aa11.46□□□□□ -0.58
GPNMB-202ENST00000381990 U2AF1L5P0DN76 240 aaPredicted RBP11.45□□□□□ -0.58
GPNMB-202ENST00000381990 U2AF1Q01081 240 aaKnown RBP eCLIP11.45□□□□□ -0.58
GPNMB-202ENST00000381990 SKAP1Q86WV1 359 aa11.45□□□□□ -0.58
GPNMB-202ENST00000381990 FAM43AQ8N2R8 423 aa11.45□□□□□ -0.58
GPNMB-202ENST00000381990 E9PSI1 815 aa11.45□□□□□ -0.58
GPNMB-202ENST00000381990 NCBP3Q53F19 620 aaKnown RBP11.45□□□□□ -0.58
GPNMB-202ENST00000381990 TCP11L2Q8N4U5 519 aa11.45□□□□□ -0.58
GPNMB-202ENST00000381990 SLC4A3P48751 1232 aa11.45□□□□□ -0.58
GPNMB-202ENST00000381990 NKTRP30414 1462 aaKnown RBP11.44□□□□□ -0.58
GPNMB-202ENST00000381990 PLEKHG3A1L390 1219 aa11.44□□□□□ -0.58
GPNMB-202ENST00000381990 ANKLE2Q86XL3 938 aa11.44□□□□□ -0.58
GPNMB-202ENST00000381990 WWC1Q8IX03 1113 aa11.44□□□□□ -0.58
GPNMB-202ENST00000381990 RSPH6AQ9H0K4 717 aa11.44□□□□□ -0.58
GPNMB-202ENST00000381990 NME9Q86XW9 330 aa11.44□□□□□ -0.58
GPNMB-202ENST00000381990 DIAPH1O60610 1272 aaKnown RBP11.43□□□□□ -0.58
GPNMB-202ENST00000381990 FRAT2O75474 233 aaPredicted RBP11.43□□□□□ -0.58
GPNMB-202ENST00000381990 CCDC27Q2M243 656 aa11.43□□□□□ -0.58
GPNMB-202ENST00000381990 MAP2P11137 1827 aaKnown RBP11.43□□□□□ -0.58
GPNMB-202ENST00000381990 POLKQ9UBT6 870 aa11.43□□□□□ -0.58
GPNMB-202ENST00000381990 AATKQ6ZMQ8 1374 aa11.43□□□□□ -0.58
GPNMB-202ENST00000381990 MAPK8IP3Q9UPT6 1336 aa11.42□□□□□ -0.58
GPNMB-202ENST00000381990 U2SURPO15042 1029 aaKnown RBP11.42□□□□□ -0.58
GPNMB-202ENST00000381990 UBE2Q2Q8WVN8 375 aa11.42□□□□□ -0.58
GPNMB-202ENST00000381990 COG3Q96JB2 828 aa11.42□□□□□ -0.58
GPNMB-202ENST00000381990 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
GPNMB-202ENST00000381990 NRKQ7Z2Y5 1582 aa11.42□□□□□ -0.58
GPNMB-202ENST00000381990 BECN1Q14457 450 aa11.42□□□□□ -0.58
GPNMB-202ENST00000381990 ACEP12821 1306 aa11.42□□□□□ -0.58
GPNMB-202ENST00000381990 WDR63Q8IWG1 891 aa11.41□□□□□ -0.58
GPNMB-202ENST00000381990 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.41□□□□□ -0.58
GPNMB-202ENST00000381990 KCNA6P17658 529 aa11.41□□□□□ -0.58
GPNMB-202ENST00000381990 RRP7AQ9Y3A4 280 aaKnown RBP11.41□□□□□ -0.58
GPNMB-202ENST00000381990 DMRT2Q9Y5R5 561 aa11.41□□□□□ -0.58
GPNMB-202ENST00000381990 USP6P35125 1406 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 AAMPQ13685 434 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 NEUROD2Q15784 382 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 PNNQ9H307 717 aaKnown RBP11.4□□□□□ -0.58
GPNMB-202ENST00000381990 TTC21BQ7Z4L5 1316 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 NUTM2FA1L443 756 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 RGS3P49796 1198 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 PDE3AQ14432 1141 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 PLEKHF1Q96S99 279 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 ZRANB1Q9UGI0 708 aa11.4□□□□□ -0.58
GPNMB-202ENST00000381990 CDK12Q9NYV4 1490 aaPredicted RBP11.4□□□□□ -0.58
GPNMB-202ENST00000381990 CHD2O14647 1828 aaKnown RBP11.4□□□□□ -0.58
GPNMB-202ENST00000381990 ANKARQ7Z5J8 1434 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms