RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 NUDT16Q96DE0 195 aaKnown RBP14.02□□□□□ -0.16
NEDD9-201ENST00000379433 EID1Q9Y6B2 187 aa14.02□□□□□ -0.16
NEDD9-201ENST00000379433 PREX1Q8TCU6 1659 aa14.02□□□□□ -0.16
NEDD9-201ENST00000379433 HDGFP51858 240 aaKnown RBP14.02□□□□□ -0.17
NEDD9-201ENST00000379433 ANKRD36BQ8N2N9 1353 aa14.01□□□□□ -0.17
NEDD9-201ENST00000379433 SLFN5Q08AF3 891 aa14.01□□□□□ -0.17
NEDD9-201ENST00000379433 A2ML1A8K2U0 1454 aa14.01□□□□□ -0.17
NEDD9-201ENST00000379433 MYOM1P52179 1685 aa14.01□□□□□ -0.17
NEDD9-201ENST00000379433 TULP4Q9NRJ4 1543 aa14.01□□□□□ -0.17
NEDD9-201ENST00000379433 MAPK8IP3Q9UPT6 1336 aa14.01□□□□□ -0.17
NEDD9-201ENST00000379433 ABCF1Q8NE71 845 aaKnown RBP eCLIP14□□□□□ -0.17
NEDD9-201ENST00000379433 RUNDC1Q96C34 613 aa14□□□□□ -0.17
NEDD9-201ENST00000379433 WASLO00401 505 aaPredicted RBP14□□□□□ -0.17
NEDD9-201ENST00000379433 SBNO2Q9Y2G9 1366 aa14□□□□□ -0.17
NEDD9-201ENST00000379433 BLMP54132 1417 aaPredicted RBP14□□□□□ -0.17
NEDD9-201ENST00000379433 ELL2O00472 640 aaPredicted RBP14□□□□□ -0.17
NEDD9-201ENST00000379433 TCERG1O14776 1098 aaKnown RBP14□□□□□ -0.17
NEDD9-201ENST00000379433 THUMPD2Q9BTF0 503 aaKnown RBP14□□□□□ -0.17
NEDD9-201ENST00000379433 IFT172Q9UG01 1749 aa14□□□□□ -0.17
NEDD9-201ENST00000379433 PANK1Q8TE04 598 aa13.99□□□□□ -0.17
NEDD9-201ENST00000379433 TMEM131LA2VDJ0 1609 aa13.98□□□□□ -0.17
NEDD9-201ENST00000379433 PAK3O75914 559 aaPredicted RBP13.98□□□□□ -0.17
NEDD9-201ENST00000379433 RGS3P49796 1198 aa13.98□□□□□ -0.17
NEDD9-201ENST00000379433 TNNQ9UQP3 1299 aa13.98□□□□□ -0.17
NEDD9-201ENST00000379433 AMOTL2Q9Y2J4 779 aa13.98□□□□□ -0.17
NEDD9-201ENST00000379433 COG6Q9Y2V7 657 aa13.98□□□□□ -0.17
NEDD9-201ENST00000379433 DIAPH1O60610 1272 aaKnown RBP13.97□□□□□ -0.17
NEDD9-201ENST00000379433 ATAD2Q6PL18 1390 aa13.97□□□□□ -0.17
NEDD9-201ENST00000379433 ALKQ9UM73 1620 aa13.97□□□□□ -0.17
NEDD9-201ENST00000379433 KIAA1210Q9ULL0 1709 aa13.97□□□□□ -0.17
NEDD9-201ENST00000379433 E9PSI1 815 aa13.96□□□□□ -0.17
NEDD9-201ENST00000379433 RIPK4P57078 832 aa13.96□□□□□ -0.17
NEDD9-201ENST00000379433 KIF13AQ9H1H9 1805 aa13.96□□□□□ -0.17
NEDD9-201ENST00000379433 RNF123Q5XPI4 1314 aa13.96□□□□□ -0.18
NEDD9-201ENST00000379433 NGDNQ8NEJ9 315 aaKnown RBP13.95□□□□□ -0.18
NEDD9-201ENST00000379433 CCDC61Q9Y6R9 512 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 ZMYM4Q5VZL5 1548 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 PTPRMP28827 1452 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 NEFMP07197 916 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 PRKAR2BP31323 418 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 SETBP1Q9Y6X0 1596 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 LMOD2Q6P5Q4 547 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 COG3Q96JB2 828 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 NPC1L1Q9UHC9 1359 aa13.95□□□□□ -0.18
NEDD9-201ENST00000379433 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.94□□□□□ -0.18
NEDD9-201ENST00000379433 TMEM2Q9UHN6 1383 aa13.93□□□□□ -0.18
NEDD9-201ENST00000379433 PPIP5K1Q6PFW1 1433 aa13.93□□□□□ -0.18
NEDD9-201ENST00000379433 ROBO2Q9HCK4 1378 aa13.93□□□□□ -0.18
NEDD9-201ENST00000379433 POLKQ9UBT6 870 aa13.93□□□□□ -0.18
NEDD9-201ENST00000379433 NAP1L2Q9ULW6 460 aaPredicted RBP13.93□□□□□ -0.18
NEDD9-201ENST00000379433 POLR3AO14802 1390 aaPredicted RBP13.93□□□□□ -0.18
NEDD9-201ENST00000379433 LTV1Q96GA3 475 aaPredicted RBP13.93□□□□□ -0.18
NEDD9-201ENST00000379433 ZNF521Q96K83 1311 aa13.92□□□□□ -0.18
NEDD9-201ENST00000379433 ARHGEF28Q8N1W1 1705 aaKnown RBP13.92□□□□□ -0.18
NEDD9-201ENST00000379433 DCTN1Q14203 1278 aa13.92□□□□□ -0.18
NEDD9-201ENST00000379433 BCCIPQ9P287 314 aaKnown RBP eCLIP13.92□□□□□ -0.18
NEDD9-201ENST00000379433 PRR36Q9H6K5 1346 aa13.92□□□□□ -0.18
NEDD9-201ENST00000379433 XPCQ01831 940 aaPredicted RBP13.91□□□□□ -0.18
NEDD9-201ENST00000379433 PHACTR3Q96KR7 559 aa13.91□□□□□ -0.18
NEDD9-201ENST00000379433 ACEP12821 1306 aa13.91□□□□□ -0.18
NEDD9-201ENST00000379433 ZC3H13Q5T200 1668 aaKnown RBP13.91□□□□□ -0.18
NEDD9-201ENST00000379433 TMPOP42166 694 aaKnown RBP13.9□□□□□ -0.18
NEDD9-201ENST00000379433 EXOSC9Q06265 439 aaKnown RBP13.9□□□□□ -0.18
NEDD9-201ENST00000379433 THEMISQ8N1K5 641 aaPredicted RBP13.9□□□□□ -0.18
NEDD9-201ENST00000379433 ABCC11Q96J66 1382 aa13.9□□□□□ -0.18
NEDD9-201ENST00000379433 ZFYVE9O95405 1425 aa13.9□□□□□ -0.18
NEDD9-201ENST00000379433 KCNA6P17658 529 aa13.9□□□□□ -0.18
NEDD9-201ENST00000379433 NEURL4Q96JN8 1562 aa13.9□□□□□ -0.18
NEDD9-201ENST00000379433 FAM83GA6ND36 823 aa13.9□□□□□ -0.18
NEDD9-201ENST00000379433 CCDC9Q9Y3X0 531 aaKnown RBP13.9□□□□□ -0.18
NEDD9-201ENST00000379433 ARHGEF40Q8TER5 1519 aa13.89□□□□□ -0.19
NEDD9-201ENST00000379433 SMC4Q9NTJ3 1288 aa13.88□□□□□ -0.19
NEDD9-201ENST00000379433 AEBP1Q8IUX7 1158 aa13.88□□□□□ -0.19
NEDD9-201ENST00000379433 AGLP35573 1532 aa13.87□□□□□ -0.19
NEDD9-201ENST00000379433 MSH5O43196 834 aa13.87□□□□□ -0.19
NEDD9-201ENST00000379433 FTSJ3Q8IY81 847 aaKnown RBP13.87□□□□□ -0.19
NEDD9-201ENST00000379433 CHMP4BQ9H444 224 aaKnown RBP13.87□□□□□ -0.19
NEDD9-201ENST00000379433 PRDM10Q9NQV6 1147 aa13.87□□□□□ -0.19
NEDD9-201ENST00000379433 HSP90AB2PQ58FF8 381 aa13.87□□□□□ -0.19
NEDD9-201ENST00000379433 NKTRP30414 1462 aaKnown RBP13.86□□□□□ -0.19
NEDD9-201ENST00000379433 RLBP1P12271 317 aa13.86□□□□□ -0.19
NEDD9-201ENST00000379433 SULT6B1Q6IMI4 303 aa13.85□□□□□ -0.19
NEDD9-201ENST00000379433 MYH16Q9H6N6 1097 aa13.85□□□□□ -0.19
NEDD9-201ENST00000379433 RARSP54136 660 aaKnown RBP13.85□□□□□ -0.19
NEDD9-201ENST00000379433 NLRP6P59044 892 aa13.85□□□□□ -0.19
NEDD9-201ENST00000379433 MYO3AQ8NEV4 1616 aa13.85□□□□□ -0.19
NEDD9-201ENST00000379433 CD163L1Q9NR16 1453 aa13.85□□□□□ -0.19
NEDD9-201ENST00000379433 SPATA31D1Q6ZQQ2 1576 aa13.84□□□□□ -0.19
NEDD9-201ENST00000379433 BRPF3Q9ULD4 1205 aa13.84□□□□□ -0.19
NEDD9-201ENST00000379433 TRIM35Q9UPQ4 493 aa13.84□□□□□ -0.19
NEDD9-201ENST00000379433 PUS7Q96PZ0 661 aaKnown RBP13.84□□□□□ -0.19
NEDD9-201ENST00000379433 FANCIQ9NVI1 1328 aa13.84□□□□□ -0.19
NEDD9-201ENST00000379433 MIS18AQ9NYP9 233 aa13.83□□□□□ -0.2
NEDD9-201ENST00000379433 AMPHP49418 695 aa13.83□□□□□ -0.2
NEDD9-201ENST00000379433 ITPRIPQ8IWB1 547 aa13.83□□□□□ -0.2
NEDD9-201ENST00000379433 ZFP91Q96JP5 570 aaPredicted RBP13.82□□□□□ -0.2
NEDD9-201ENST00000379433 PLEKHF1Q96S99 279 aa13.82□□□□□ -0.2
NEDD9-201ENST00000379433 NSD2O96028 1365 aa13.82□□□□□ -0.2
NEDD9-201ENST00000379433 IGHDP01880 384 aa13.82□□□□□ -0.2
NEDD9-201ENST00000379433 ESCO1Q5FWF5 840 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms