RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FRAT1Q92837 279 aaPredicted RBP17.36■□□□□ 0.37
CCDC3-202ENST00000378839 TRIM35Q9UPQ4 493 aa17.36■□□□□ 0.37
CCDC3-202ENST00000378839 DLC1Q96QB1 1528 aa17.36■□□□□ 0.37
CCDC3-202ENST00000378839 PDE3AQ14432 1141 aa17.36■□□□□ 0.37
CCDC3-202ENST00000378839 NCKAP5LQ9HCH0 1330 aa17.35■□□□□ 0.37
CCDC3-202ENST00000378839 ZMYM3Q14202 1370 aa17.35■□□□□ 0.37
CCDC3-202ENST00000378839 TSR2Q969E8 191 aaKnown RBP17.35■□□□□ 0.37
CCDC3-202ENST00000378839 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.35■□□□□ 0.37
CCDC3-202ENST00000378839 ANO8Q9HCE9 1232 aaPredicted RBP17.35■□□□□ 0.37
CCDC3-202ENST00000378839 PNPLA6Q8IY17 1366 aa17.34■□□□□ 0.37
CCDC3-202ENST00000378839 C8orf34Q49A92 452 aa17.34■□□□□ 0.37
CCDC3-202ENST00000378839 KIF20BQ96Q89 1820 aa17.33■□□□□ 0.37
CCDC3-202ENST00000378839 DEKP35659 375 aaKnown RBP17.33■□□□□ 0.37
CCDC3-202ENST00000378839 TMPOP42166 694 aaKnown RBP17.33■□□□□ 0.37
CCDC3-202ENST00000378839 RTN4Q9NQC3 1192 aaKnown RBP17.33■□□□□ 0.36
CCDC3-202ENST00000378839 HDGFL2Q7Z4V5 671 aaPredicted RBP17.32■□□□□ 0.36
CCDC3-202ENST00000378839 ZBTB47Q9UFB7 747 aaPredicted RBP17.32■□□□□ 0.36
CCDC3-202ENST00000378839 ZRANB1Q9UGI0 708 aa17.32■□□□□ 0.36
CCDC3-202ENST00000378839 RGS3P49796 1198 aa17.32■□□□□ 0.36
CCDC3-202ENST00000378839 TXNDC2Q86VQ3 553 aa17.32■□□□□ 0.36
CCDC3-202ENST00000378839 CLUAP1Q96AJ1 413 aa17.31■□□□□ 0.36
CCDC3-202ENST00000378839 NCBP3Q53F19 620 aaKnown RBP17.3■□□□□ 0.36
CCDC3-202ENST00000378839 POLKQ9UBT6 870 aa17.3■□□□□ 0.36
CCDC3-202ENST00000378839 CANXP27824 592 aaKnown RBP17.3■□□□□ 0.36
CCDC3-202ENST00000378839 PCDHB15Q9Y5E8 787 aa17.3■□□□□ 0.36
CCDC3-202ENST00000378839 CPSF1Q10570 1443 aaKnown RBP17.29■□□□□ 0.36
CCDC3-202ENST00000378839 DIAPH1O60610 1272 aaKnown RBP17.28■□□□□ 0.36
CCDC3-202ENST00000378839 ATP7BP35670 1465 aa17.28■□□□□ 0.36
CCDC3-202ENST00000378839 WASLO00401 505 aaPredicted RBP17.28■□□□□ 0.36
CCDC3-202ENST00000378839 EXOSC9Q06265 439 aaKnown RBP17.28■□□□□ 0.36
CCDC3-202ENST00000378839 NME9Q86XW9 330 aa17.27■□□□□ 0.36
CCDC3-202ENST00000378839 MYH16Q9H6N6 1097 aa17.27■□□□□ 0.36
CCDC3-202ENST00000378839 PPIP5K1Q6PFW1 1433 aa17.27■□□□□ 0.35
CCDC3-202ENST00000378839 CPS1P31327 1500 aa17.26■□□□□ 0.35
CCDC3-202ENST00000378839 LRRC7Q96NW7 1537 aa17.26■□□□□ 0.35
CCDC3-202ENST00000378839 PPM1GO15355 546 aaPredicted RBP17.26■□□□□ 0.35
CCDC3-202ENST00000378839 EMILIN1Q9Y6C2 1016 aa17.26■□□□□ 0.35
CCDC3-202ENST00000378839 RIPK4P57078 832 aa17.26■□□□□ 0.35
CCDC3-202ENST00000378839 FAM161AQ3B820 660 aa17.26■□□□□ 0.35
CCDC3-202ENST00000378839 PHACTR3Q96KR7 559 aa17.25■□□□□ 0.35
CCDC3-202ENST00000378839 RSPH6AQ9H0K4 717 aa17.25■□□□□ 0.35
CCDC3-202ENST00000378839 CDC42BPGQ6DT37 1551 aa17.25■□□□□ 0.35
CCDC3-202ENST00000378839 MAP2P11137 1827 aaKnown RBP17.24■□□□□ 0.35
CCDC3-202ENST00000378839 PRR36Q9H6K5 1346 aa17.24■□□□□ 0.35
CCDC3-202ENST00000378839 NUDT16Q96DE0 195 aaKnown RBP17.24■□□□□ 0.35
CCDC3-202ENST00000378839 TNRQ92752 1358 aa17.23■□□□□ 0.35
CCDC3-202ENST00000378839 SSH1Q8WYL5 1049 aa17.23■□□□□ 0.35
CCDC3-202ENST00000378839 MAPK8IP3Q9UPT6 1336 aa17.23■□□□□ 0.35
CCDC3-202ENST00000378839 UBR1Q8IWV7 1749 aa17.23■□□□□ 0.35
CCDC3-202ENST00000378839 ROBO2Q9HCK4 1378 aa17.23■□□□□ 0.35
CCDC3-202ENST00000378839 TECPR2O15040 1411 aa17.22■□□□□ 0.35
CCDC3-202ENST00000378839 HMOX1P09601 288 aa17.22■□□□□ 0.35
CCDC3-202ENST00000378839 PRKAR2BP31323 418 aa17.22■□□□□ 0.35
CCDC3-202ENST00000378839 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.22■□□□□ 0.35
CCDC3-202ENST00000378839 FAM135BQ49AJ0 1406 aa17.22■□□□□ 0.35
CCDC3-202ENST00000378839 LTKP29376 864 aa17.22■□□□□ 0.35
CCDC3-202ENST00000378839 TMEM2Q9UHN6 1383 aa17.21■□□□□ 0.35
CCDC3-202ENST00000378839 ADAMTS13Q76LX8 1427 aa17.21■□□□□ 0.35
CCDC3-202ENST00000378839 EDC4Q6P2E9 1401 aaKnown RBP17.21■□□□□ 0.35
CCDC3-202ENST00000378839 KNDC1Q76NI1 1749 aa17.21■□□□□ 0.35
CCDC3-202ENST00000378839 SLC4A3P48751 1232 aa17.21■□□□□ 0.35
CCDC3-202ENST00000378839 CEBPAP49715 358 aaPredicted RBP17.2■□□□□ 0.34
CCDC3-202ENST00000378839 ESF1Q9H501 851 aaKnown RBP17.2■□□□□ 0.34
CCDC3-202ENST00000378839 FCHSD2O94868 740 aa17.2■□□□□ 0.34
CCDC3-202ENST00000378839 TRIM27P14373 513 aa17.2■□□□□ 0.34
CCDC3-202ENST00000378839 IL13P35225 146 aa17.2■□□□□ 0.34
CCDC3-202ENST00000378839 THUMPD2Q9BTF0 503 aaKnown RBP17.2■□□□□ 0.34
CCDC3-202ENST00000378839 SEC24BO95487 1268 aa17.2■□□□□ 0.34
CCDC3-202ENST00000378839 MVPQ14764 893 aaKnown RBP17.19■□□□□ 0.34
CCDC3-202ENST00000378839 RRS1Q15050 365 aaKnown RBP17.19■□□□□ 0.34
CCDC3-202ENST00000378839 IL16Q14005 1332 aa17.19■□□□□ 0.34
CCDC3-202ENST00000378839 SMC4Q9NTJ3 1288 aa17.19■□□□□ 0.34
CCDC3-202ENST00000378839 LAS1LQ9Y4W2 734 aaKnown RBP17.19■□□□□ 0.34
CCDC3-202ENST00000378839 USP19O94966 1318 aa17.18■□□□□ 0.34
CCDC3-202ENST00000378839 ZKSCAN2Q63HK3 967 aa17.18■□□□□ 0.34
CCDC3-202ENST00000378839 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.18■□□□□ 0.34
CCDC3-202ENST00000378839 MON2Q7Z3U7 1717 aa17.18■□□□□ 0.34
CCDC3-202ENST00000378839 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
CCDC3-202ENST00000378839 NOB1Q9ULX3 412 aaKnown RBP17.18■□□□□ 0.34
CCDC3-202ENST00000378839 CCDC61Q9Y6R9 512 aa17.18■□□□□ 0.34
CCDC3-202ENST00000378839 DZIP1LQ8IYY4 767 aaKnown RBP17.17■□□□□ 0.34
CCDC3-202ENST00000378839 SIRT1Q96EB6 747 aa17.17■□□□□ 0.34
CCDC3-202ENST00000378839 C3P01024 1663 aa17.16■□□□□ 0.34
CCDC3-202ENST00000378839 CT47B1P0C2W7 299 aaPredicted RBP17.16■□□□□ 0.34
CCDC3-202ENST00000378839 AKAP12Q02952 1782 aa17.16■□□□□ 0.34
CCDC3-202ENST00000378839 PTPRUQ92729 1446 aa17.15■□□□□ 0.34
CCDC3-202ENST00000378839 NUTM2FA1L443 756 aa17.15■□□□□ 0.34
CCDC3-202ENST00000378839 PDZRN3Q9UPQ7 1066 aa17.15■□□□□ 0.34
CCDC3-202ENST00000378839 AATKQ6ZMQ8 1374 aa17.14■□□□□ 0.33
CCDC3-202ENST00000378839 CDK12Q9NYV4 1490 aaPredicted RBP17.14■□□□□ 0.33
CCDC3-202ENST00000378839 PMFBP1Q8TBY8 1022 aa17.14■□□□□ 0.33
CCDC3-202ENST00000378839 NFE2L2Q16236 605 aa17.13■□□□□ 0.33
CCDC3-202ENST00000378839 ATF7IPQ6VMQ6 1270 aa17.13■□□□□ 0.33
CCDC3-202ENST00000378839 VIRMAQ69YN4 1812 aaKnown RBP17.13■□□□□ 0.33
CCDC3-202ENST00000378839 FTSJ3Q8IY81 847 aaKnown RBP17.13■□□□□ 0.33
CCDC3-202ENST00000378839 TMEM57Q8N5G2 664 aa17.13■□□□□ 0.33
CCDC3-202ENST00000378839 TSPYL6Q8N831 410 aa17.13■□□□□ 0.33
CCDC3-202ENST00000378839 SLC26A8Q96RN1 970 aa17.13■□□□□ 0.33
CCDC3-202ENST00000378839 COG3Q96JB2 828 aa17.12■□□□□ 0.33
CCDC3-202ENST00000378839 AAMPQ13685 434 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms