RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 USP6P35125 1406 aa16.25■□□□□ 0.19
DEPDC4-202ENST00000378244 TNS3Q68CZ2 1445 aa16.24■□□□□ 0.19
DEPDC4-202ENST00000378244 ADAMTS2O95450 1211 aa16.24■□□□□ 0.19
DEPDC4-202ENST00000378244 HAP1P54257 671 aaPredicted RBP16.24■□□□□ 0.19
DEPDC4-202ENST00000378244 CPSF1Q10570 1443 aaKnown RBP16.24■□□□□ 0.19
DEPDC4-202ENST00000378244 SBNO1A3KN83 1393 aa16.23■□□□□ 0.19
DEPDC4-202ENST00000378244 CD163L1Q9NR16 1453 aa16.23■□□□□ 0.19
DEPDC4-202ENST00000378244 WASHC2AQ641Q2 1341 aa16.23■□□□□ 0.19
DEPDC4-202ENST00000378244 TTC21BQ7Z4L5 1316 aa16.22■□□□□ 0.19
DEPDC4-202ENST00000378244 NLRP6P59044 892 aa16.22■□□□□ 0.19
DEPDC4-202ENST00000378244 NINLQ9Y2I6 1382 aa16.21■□□□□ 0.18
DEPDC4-202ENST00000378244 SOX12O15370 315 aa16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 NME9Q86XW9 330 aa16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 ZRANB1Q9UGI0 708 aa16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 ARHGEF10O15013 1369 aa16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 SPATA31A6Q5VVP1 1343 aa16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 MEX3CQ5U5Q3 659 aaKnown RBP16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 PANK3Q9H999 370 aa16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 ANKRD36BQ8N2N9 1353 aa16.2■□□□□ 0.18
DEPDC4-202ENST00000378244 CARD14Q9BXL6 1004 aa16.19■□□□□ 0.18
DEPDC4-202ENST00000378244 CCDC7Q96M83 1385 aa16.19■□□□□ 0.18
DEPDC4-202ENST00000378244 SSH2Q76I76 1423 aa16.18■□□□□ 0.18
DEPDC4-202ENST00000378244 TRPM3Q9HCF6 1732 aaPredicted RBP16.18■□□□□ 0.18
DEPDC4-202ENST00000378244 NLRP13Q86W25 1043 aa16.17■□□□□ 0.18
DEPDC4-202ENST00000378244 C8orf37Q96NL8 207 aa16.17■□□□□ 0.18
DEPDC4-202ENST00000378244 LRP6O75581 1613 aa16.17■□□□□ 0.18
DEPDC4-202ENST00000378244 CNGB1Q14028 1251 aaPredicted RBP16.17■□□□□ 0.18
DEPDC4-202ENST00000378244 ZC3H6P61129 1189 aaKnown RBP16.16■□□□□ 0.18
DEPDC4-202ENST00000378244 EDC4Q6P2E9 1401 aaKnown RBP16.16■□□□□ 0.18
DEPDC4-202ENST00000378244 ZBTB7CA1YPR0 619 aa16.16■□□□□ 0.18
DEPDC4-202ENST00000378244 GGNBP2Q9H3C7 697 aa16.16■□□□□ 0.18
DEPDC4-202ENST00000378244 MYOM1P52179 1685 aa16.15■□□□□ 0.18
DEPDC4-202ENST00000378244 SHPRHQ149N8 1683 aa16.15■□□□□ 0.18
DEPDC4-202ENST00000378244 TTC21AQ8NDW8 1320 aa16.15■□□□□ 0.18
DEPDC4-202ENST00000378244 NSD3Q9BZ95 1437 aa16.14■□□□□ 0.17
DEPDC4-202ENST00000378244 AKAP12Q02952 1782 aa16.14■□□□□ 0.17
DEPDC4-202ENST00000378244 NGLY1Q96IV0 654 aa16.14■□□□□ 0.17
DEPDC4-202ENST00000378244 PHF23Q9BUL5 403 aaPredicted RBP16.14■□□□□ 0.17
DEPDC4-202ENST00000378244 ALS2Q96Q42 1657 aa16.14■□□□□ 0.17
DEPDC4-202ENST00000378244 BRD4O60885 1362 aaPredicted RBP16.13■□□□□ 0.17
DEPDC4-202ENST00000378244 FYB1O15117 783 aa16.13■□□□□ 0.17
DEPDC4-202ENST00000378244 GCP02774 474 aa16.13■□□□□ 0.17
DEPDC4-202ENST00000378244 MON2Q7Z3U7 1717 aa16.12■□□□□ 0.17
DEPDC4-202ENST00000378244 FBLN1P23142 703 aa16.12■□□□□ 0.17
DEPDC4-202ENST00000378244 CHRNA2Q15822 529 aa16.11■□□□□ 0.17
DEPDC4-202ENST00000378244 MED1Q15648 1581 aaPredicted RBP16.11■□□□□ 0.17
DEPDC4-202ENST00000378244 COG3Q96JB2 828 aa16.11■□□□□ 0.17
DEPDC4-202ENST00000378244 KNSTRNQ9Y448 316 aa16.11■□□□□ 0.17
DEPDC4-202ENST00000378244 NRKQ7Z2Y5 1582 aa16.11■□□□□ 0.17
DEPDC4-202ENST00000378244 PIK3C2AO00443 1686 aa16.1■□□□□ 0.17
DEPDC4-202ENST00000378244 COL22A1Q8NFW1 1626 aaPredicted RBP16.1■□□□□ 0.17
DEPDC4-202ENST00000378244 PRDM11Q9NQV5 511 aa16.1■□□□□ 0.17
DEPDC4-202ENST00000378244 FAM83GA6ND36 823 aa16.1■□□□□ 0.17
DEPDC4-202ENST00000378244 CGNL1Q0VF96 1302 aa16.09■□□□□ 0.17
DEPDC4-202ENST00000378244 KIAA0232Q92628 1395 aa16.09■□□□□ 0.17
DEPDC4-202ENST00000378244 TNNT2P45379 298 aaPredicted RBP16.09■□□□□ 0.17
DEPDC4-202ENST00000378244 DDX10Q13206 875 aaKnown RBP16.09■□□□□ 0.17
DEPDC4-202ENST00000378244 USP19O94966 1318 aa16.09■□□□□ 0.17
DEPDC4-202ENST00000378244 AFF2P51816 1311 aa16.08■□□□□ 0.16
DEPDC4-202ENST00000378244 CC2D1BQ5T0F9 858 aaKnown RBP16.06■□□□□ 0.16
DEPDC4-202ENST00000378244 KCNH5Q8NCM2 988 aa16.06■□□□□ 0.16
DEPDC4-202ENST00000378244 PER1O15534 1290 aaPredicted RBP16.06■□□□□ 0.16
DEPDC4-202ENST00000378244 BTG4Q9NY30 223 aa16.06■□□□□ 0.16
DEPDC4-202ENST00000378244 RGS17Q9UGC6 210 aaPredicted RBP16.06■□□□□ 0.16
DEPDC4-202ENST00000378244 USP21Q9UK80 565 aa16.06■□□□□ 0.16
DEPDC4-202ENST00000378244 USP31Q70CQ4 1352 aa16.05■□□□□ 0.16
DEPDC4-202ENST00000378244 ZNF316A6NFI3 1004 aaPredicted RBP16.05■□□□□ 0.16
DEPDC4-202ENST00000378244 OVOS2A0A0J9YW53 1432 aa16.04■□□□□ 0.16
DEPDC4-202ENST00000378244 OVOS2Q6IE36 1432 aa16.04■□□□□ 0.16
DEPDC4-202ENST00000378244 RRS1Q15050 365 aaKnown RBP16.04■□□□□ 0.16
DEPDC4-202ENST00000378244 ABCA3Q99758 1704 aa16.03■□□□□ 0.16
DEPDC4-202ENST00000378244 STRN4Q9NRL3 753 aa16.03■□□□□ 0.16
DEPDC4-202ENST00000378244 PHRF1Q9P1Y6 1649 aaKnown RBP16.03■□□□□ 0.16
DEPDC4-202ENST00000378244 AMER1Q5JTC6 1135 aaPredicted RBP16.02■□□□□ 0.16
DEPDC4-202ENST00000378244 ARHGEF25Q86VW2 580 aa16.02■□□□□ 0.16
DEPDC4-202ENST00000378244 FNBP4Q8N3X1 1017 aaPredicted RBP16.02■□□□□ 0.16
DEPDC4-202ENST00000378244 PPM1GO15355 546 aaPredicted RBP16.02■□□□□ 0.15
DEPDC4-202ENST00000378244 CRYBG1Q9Y4K1 1723 aa16.01■□□□□ 0.15
DEPDC4-202ENST00000378244 MORC1Q86VD1 984 aa16.01■□□□□ 0.15
DEPDC4-202ENST00000378244 AXIN2Q9Y2T1 843 aa16.01■□□□□ 0.15
DEPDC4-202ENST00000378244 CCDC9Q9Y3X0 531 aaKnown RBP16.01■□□□□ 0.15
DEPDC4-202ENST00000378244 SLIT3O75094 1523 aa16.01■□□□□ 0.15
DEPDC4-202ENST00000378244 POTEAQ6S8J7 498 aa16.01■□□□□ 0.15
DEPDC4-202ENST00000378244 MARF1Q9Y4F3 1742 aaKnown RBP16■□□□□ 0.15
DEPDC4-202ENST00000378244 ZNF772Q68DY9 489 aaPredicted RBP16■□□□□ 0.15
DEPDC4-202ENST00000378244 QTRT2Q9H974 415 aaKnown RBP16■□□□□ 0.15
DEPDC4-202ENST00000378244 EVA1CP58658 441 aa16■□□□□ 0.15
DEPDC4-202ENST00000378244 MAP3K19Q56UN5 1328 aa15.99■□□□□ 0.15
DEPDC4-202ENST00000378244 CPDO75976 1380 aa15.99■□□□□ 0.15
DEPDC4-202ENST00000378244 UNC5CLQ8IV45 518 aa15.99■□□□□ 0.15
DEPDC4-202ENST00000378244 USP35Q9P2H5 1018 aa15.99■□□□□ 0.15
DEPDC4-202ENST00000378244 BCL9LQ86UU0 1499 aa15.99■□□□□ 0.15
DEPDC4-202ENST00000378244 AMPHP49418 695 aa15.99■□□□□ 0.15
DEPDC4-202ENST00000378244 EMILIN1Q9Y6C2 1016 aa15.99■□□□□ 0.15
DEPDC4-202ENST00000378244 NFAT5O94916 1531 aa15.98■□□□□ 0.15
DEPDC4-202ENST00000378244 LTV1Q96GA3 475 aaPredicted RBP15.97■□□□□ 0.15
DEPDC4-202ENST00000378244 SLIT2O94813 1529 aa15.97■□□□□ 0.15
DEPDC4-202ENST00000378244 KIF20BQ96Q89 1820 aa15.97■□□□□ 0.15
DEPDC4-202ENST00000378244 CAMTA1Q9Y6Y1 1673 aa15.96■□□□□ 0.15
DEPDC4-202ENST00000378244 CSB-PGBD3P0DP91 1061 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms