RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 C16orf71Q8IYS4 520 aaPredicted RBP13.17□□□□□ -0.3
HIF3A-205ENST00000377670 BRD4O60885 1362 aaPredicted RBP13.17□□□□□ -0.3
HIF3A-205ENST00000377670 FAM161AQ3B820 660 aa13.17□□□□□ -0.3
HIF3A-205ENST00000377670 ZC3H6P61129 1189 aaKnown RBP13.16□□□□□ -0.3
HIF3A-205ENST00000377670 DZIP1LQ8IYY4 767 aaKnown RBP13.16□□□□□ -0.3
HIF3A-205ENST00000377670 ERICH2A1L162 156 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 RILPL2Q969X0 211 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 CHMP4CQ96CF2 233 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 R3HCC1Q9Y3T6 440 aaKnown RBP13.16□□□□□ -0.3
HIF3A-205ENST00000377670 KIF21AQ7Z4S6 1674 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 BCAR3O75815 825 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 CPLX2Q6PUV4 134 aaKnown RBP13.16□□□□□ -0.3
HIF3A-205ENST00000377670 IDI1Q13907 227 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 PHF14O94880 888 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 BICDL1Q6ZP65 573 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 NEUROD6Q96NK8 337 aa13.16□□□□□ -0.3
HIF3A-205ENST00000377670 TRDNQ13061 729 aa13.15□□□□□ -0.3
HIF3A-205ENST00000377670 CENPQQ7L2Z9 268 aaPredicted RBP13.15□□□□□ -0.3
HIF3A-205ENST00000377670 GPATCH8Q9UKJ3 1502 aaKnown RBP13.15□□□□□ -0.3
HIF3A-205ENST00000377670 DDX49Q9Y6V7 483 aaKnown RBP13.15□□□□□ -0.3
HIF3A-205ENST00000377670 ATP10BO94823 1461 aa13.15□□□□□ -0.3
HIF3A-205ENST00000377670 ZNF771Q7L3S4 317 aaPredicted RBP13.15□□□□□ -0.3
HIF3A-205ENST00000377670 GAS2L2Q8NHY3 880 aa13.15□□□□□ -0.3
HIF3A-205ENST00000377670 WWC2Q6AWC2 1192 aa13.15□□□□□ -0.31
HIF3A-205ENST00000377670 FAM13BQ9NYF5 915 aa13.14□□□□□ -0.31
HIF3A-205ENST00000377670 TTLL12Q14166 644 aaPredicted RBP13.14□□□□□ -0.31
HIF3A-205ENST00000377670 EXOSC9Q06265 439 aaKnown RBP13.14□□□□□ -0.31
HIF3A-205ENST00000377670 CSPP1Q1MSJ5 1256 aa13.14□□□□□ -0.31
HIF3A-205ENST00000377670 ZPR1O75312 459 aa13.14□□□□□ -0.31
HIF3A-205ENST00000377670 NUP153P49790 1475 aaKnown RBP13.14□□□□□ -0.31
HIF3A-205ENST00000377670 ZNF692Q9BU19 519 aaPredicted RBP13.13□□□□□ -0.31
HIF3A-205ENST00000377670 GNL3LQ9NVN8 582 aaKnown RBP13.13□□□□□ -0.31
HIF3A-205ENST00000377670 SULT6B1Q6IMI4 303 aa13.13□□□□□ -0.31
HIF3A-205ENST00000377670 DIAPH3Q9NSV4 1193 aa13.13□□□□□ -0.31
HIF3A-205ENST00000377670 SF3A1Q15459 793 aaKnown RBP13.13□□□□□ -0.31
HIF3A-205ENST00000377670 LNPKQ9C0E8 428 aa13.13□□□□□ -0.31
HIF3A-205ENST00000377670 FANCAO15360 1455 aa13.12□□□□□ -0.31
HIF3A-205ENST00000377670 KIF16BQ96L93 1317 aa13.12□□□□□ -0.31
HIF3A-205ENST00000377670 MAP3K1Q13233 1512 aa13.12□□□□□ -0.31
HIF3A-205ENST00000377670 ST18O60284 1047 aa13.12□□□□□ -0.31
HIF3A-205ENST00000377670 NBPF14Q5TI25 921 aa13.12□□□□□ -0.31
HIF3A-205ENST00000377670 NFXL1Q6ZNB6 911 aa13.11□□□□□ -0.31
HIF3A-205ENST00000377670 C1orf115Q9H7X2 142 aa13.11□□□□□ -0.31
HIF3A-205ENST00000377670 TMEM132AQ24JP5 1023 aa13.11□□□□□ -0.31
HIF3A-205ENST00000377670 TRIM29Q14134 588 aa13.11□□□□□ -0.31
HIF3A-205ENST00000377670 SKOR2Q2VWA4 1001 aaPredicted RBP13.11□□□□□ -0.31
HIF3A-205ENST00000377670 CNNM1Q9NRU3 951 aa13.11□□□□□ -0.31
HIF3A-205ENST00000377670 TMOD2Q9NZR1 351 aa13.11□□□□□ -0.31
HIF3A-205ENST00000377670 LRPPRCP42704 1394 aaKnown RBP13.11□□□□□ -0.31
HIF3A-205ENST00000377670 MTMR7Q9Y216 660 aa13.11□□□□□ -0.31
HIF3A-205ENST00000377670 ZNF530Q6P9A1 599 aaPredicted RBP13.1□□□□□ -0.31
HIF3A-205ENST00000377670 FBLN1P23142 703 aa13.1□□□□□ -0.31
HIF3A-205ENST00000377670 RTEL1-TNFRSF6BF6WH68 1400 aa13.1□□□□□ -0.31
HIF3A-205ENST00000377670 FOXD4L6Q3SYB3 417 aaPredicted RBP13.1□□□□□ -0.31
HIF3A-205ENST00000377670 FOXD4L3Q6VB84 417 aaPredicted RBP13.1□□□□□ -0.31
HIF3A-205ENST00000377670 GNAI1P63096 354 aa13.1□□□□□ -0.31
HIF3A-205ENST00000377670 WASHC4Q2M389 1173 aa13.1□□□□□ -0.31
HIF3A-205ENST00000377670 THUMPD2Q9BTF0 503 aaKnown RBP13.1□□□□□ -0.31
HIF3A-205ENST00000377670 TBC1D2BQ9UPU7 963 aa13.1□□□□□ -0.31
HIF3A-205ENST00000377670 FAM184AQ8NB25 1140 aa13.09□□□□□ -0.31
HIF3A-205ENST00000377670 DDX19BQ9UMR2 479 aa13.09□□□□□ -0.31
HIF3A-205ENST00000377670 RUFY2Q8WXA3 655 aa13.09□□□□□ -0.31
HIF3A-205ENST00000377670 RAPGEF6Q8TEU7 1601 aa13.09□□□□□ -0.31
HIF3A-205ENST00000377670 A0A0U1RQG5 324 aaPredicted RBP13.09□□□□□ -0.31
HIF3A-205ENST00000377670 NSD3Q9BZ95 1437 aa13.09□□□□□ -0.31
HIF3A-205ENST00000377670 H3BQV1 296 aa13.08□□□□□ -0.31
HIF3A-205ENST00000377670 IFFO2Q5TF58 517 aa13.08□□□□□ -0.31
HIF3A-205ENST00000377670 ZSCAN29Q8IWY8 852 aaPredicted RBP13.08□□□□□ -0.31
HIF3A-205ENST00000377670 API5Q9BZZ5 524 aaKnown RBP13.08□□□□□ -0.32
HIF3A-205ENST00000377670 KCNH5Q8NCM2 988 aa13.08□□□□□ -0.32
HIF3A-205ENST00000377670 HSP90AB4PQ58FF6 505 aa13.08□□□□□ -0.32
HIF3A-205ENST00000377670 NUDT16Q96DE0 195 aaKnown RBP13.08□□□□□ -0.32
HIF3A-205ENST00000377670 ZNF652Q9Y2D9 606 aa13.08□□□□□ -0.32
HIF3A-205ENST00000377670 ATP2B2Q01814 1243 aa13.08□□□□□ -0.32
HIF3A-205ENST00000377670 C8orf37Q96NL8 207 aa13.08□□□□□ -0.32
HIF3A-205ENST00000377670 MSH6P52701 1360 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 PES1O00541 588 aaKnown RBP13.07□□□□□ -0.32
HIF3A-205ENST00000377670 SLC3A2P08195 630 aaKnown RBP13.07□□□□□ -0.32
HIF3A-205ENST00000377670 CADPS2Q86UW7 1296 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 EXOC5O00471 708 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 CPLX1O14810 134 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 POLD1P28340 1107 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 SETQ01105 290 aaPredicted RBP13.07□□□□□ -0.32
HIF3A-205ENST00000377670 ZNF592Q92610 1267 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 AK7Q96M32 723 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 MPHOSPH8Q99549 860 aa13.07□□□□□ -0.32
HIF3A-205ENST00000377670 STARD3NLO95772 234 aa13.06□□□□□ -0.32
HIF3A-205ENST00000377670 TMOD3Q9NYL9 352 aa13.06□□□□□ -0.32
HIF3A-205ENST00000377670 TPD52L1Q16890 204 aaPredicted RBP13.06□□□□□ -0.32
HIF3A-205ENST00000377670 CCDC47Q96A33 483 aaKnown RBP13.06□□□□□ -0.32
HIF3A-205ENST00000377670 SKAP1Q86WV1 359 aa13.06□□□□□ -0.32
HIF3A-205ENST00000377670 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
HIF3A-205ENST00000377670 FAM43AQ8N2R8 423 aa13.06□□□□□ -0.32
HIF3A-205ENST00000377670 ZNF219Q9P2Y4 722 aaPredicted RBP13.06□□□□□ -0.32
HIF3A-205ENST00000377670 MAPKBP1O60336 1514 aa13.05□□□□□ -0.32
HIF3A-205ENST00000377670 NOS1P29475 1434 aa13.05□□□□□ -0.32
HIF3A-205ENST00000377670 GRM1Q13255 1194 aa13.05□□□□□ -0.32
HIF3A-205ENST00000377670 NME9Q86XW9 330 aa13.05□□□□□ -0.32
HIF3A-205ENST00000377670 CCAR2Q8N163 923 aaKnown RBP13.05□□□□□ -0.32
HIF3A-205ENST00000377670 UGGT2Q9NYU1 1516 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms