RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 ADAMTS8Q9UP79 889 aa15.41■□□□□ 0.06
C9orf3-203ENST00000375315 ALKQ9UM73 1620 aa15.4■□□□□ 0.06
C9orf3-203ENST00000375315 C14orf37Q86TY3 774 aa15.4■□□□□ 0.06
C9orf3-203ENST00000375315 PMFBP1Q8TBY8 1022 aa15.4■□□□□ 0.06
C9orf3-203ENST00000375315 HSPA2P54652 639 aa15.4■□□□□ 0.06
C9orf3-203ENST00000375315 ASXL1Q8IXJ9 1541 aa15.39■□□□□ 0.05
C9orf3-203ENST00000375315 C20orf194Q5TEA3 1177 aa15.39■□□□□ 0.05
C9orf3-203ENST00000375315 GZF1Q9H116 711 aaPredicted RBP15.39■□□□□ 0.05
C9orf3-203ENST00000375315 ISY1Q9ULR0 285 aaKnown RBP15.39■□□□□ 0.05
C9orf3-203ENST00000375315 PARD3Q8TEW0 1356 aa15.38■□□□□ 0.05
C9orf3-203ENST00000375315 LAMC1P11047 1609 aa15.38■□□□□ 0.05
C9orf3-203ENST00000375315 ANTXR1Q9H6X2 564 aa15.38■□□□□ 0.05
C9orf3-203ENST00000375315 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.38■□□□□ 0.05
C9orf3-203ENST00000375315 ZRANB1Q9UGI0 708 aa15.38■□□□□ 0.05
C9orf3-203ENST00000375315 PTPRMP28827 1452 aa15.38■□□□□ 0.05
C9orf3-203ENST00000375315 MCM4P33991 863 aa15.37■□□□□ 0.05
C9orf3-203ENST00000375315 USP19O94966 1318 aa15.37■□□□□ 0.05
C9orf3-203ENST00000375315 FGD1P98174 961 aa15.37■□□□□ 0.05
C9orf3-203ENST00000375315 ZFYVE9O95405 1425 aa15.37■□□□□ 0.05
C9orf3-203ENST00000375315 KCNA6P17658 529 aa15.36■□□□□ 0.05
C9orf3-203ENST00000375315 HDGFL2Q7Z4V5 671 aaPredicted RBP15.36■□□□□ 0.05
C9orf3-203ENST00000375315 NUDT16Q96DE0 195 aaKnown RBP15.36■□□□□ 0.05
C9orf3-203ENST00000375315 MAP7D2Q96T17 732 aa15.36■□□□□ 0.05
C9orf3-203ENST00000375315 WASLO00401 505 aaPredicted RBP15.36■□□□□ 0.05
C9orf3-203ENST00000375315 MTHFSP49914 203 aa15.36■□□□□ 0.05
C9orf3-203ENST00000375315 GRPEL1Q9HAV7 217 aa15.36■□□□□ 0.05
C9orf3-203ENST00000375315 ROBO2Q9HCK4 1378 aa15.36■□□□□ 0.05
C9orf3-203ENST00000375315 ANKLE2Q86XL3 938 aa15.35■□□□□ 0.05
C9orf3-203ENST00000375315 TERF2IPQ9NYB0 399 aa15.35■□□□□ 0.05
C9orf3-203ENST00000375315 CGNL1Q0VF96 1302 aa15.35■□□□□ 0.05
C9orf3-203ENST00000375315 NEURL4Q96JN8 1562 aa15.35■□□□□ 0.05
C9orf3-203ENST00000375315 QRICH2Q9H0J4 1663 aa15.35■□□□□ 0.05
C9orf3-203ENST00000375315 FER1L4A9Z1Z3 1794 aa15.35■□□□□ 0.05
C9orf3-203ENST00000375315 A0A1W2PP64 1363 aa15.34■□□□□ 0.05
C9orf3-203ENST00000375315 KIAA1211Q6ZU35 1233 aa15.34■□□□□ 0.05
C9orf3-203ENST00000375315 ERBB4Q15303 1308 aa15.34■□□□□ 0.05
C9orf3-203ENST00000375315 RIMS1Q86UR5 1692 aaKnown RBP15.34■□□□□ 0.05
C9orf3-203ENST00000375315 KIAA1210Q9ULL0 1709 aa15.34■□□□□ 0.05
C9orf3-203ENST00000375315 INSRP06213 1382 aa15.34■□□□□ 0.05
C9orf3-203ENST00000375315 RRP7AQ9Y3A4 280 aaKnown RBP15.34■□□□□ 0.05
C9orf3-203ENST00000375315 TULP4Q9NRJ4 1543 aa15.33■□□□□ 0.05
C9orf3-203ENST00000375315 U2SURPO15042 1029 aaKnown RBP15.33■□□□□ 0.05
C9orf3-203ENST00000375315 TRAK2O60296 914 aa15.33■□□□□ 0.05
C9orf3-203ENST00000375315 NUTM2GQ5VZR2 741 aa15.33■□□□□ 0.05
C9orf3-203ENST00000375315 UPF2Q9HAU5 1272 aaKnown RBP15.33■□□□□ 0.05
C9orf3-203ENST00000375315 C3P01024 1663 aa15.33■□□□□ 0.04
C9orf3-203ENST00000375315 KDM5AP29375 1690 aaKnown RBP15.33■□□□□ 0.04
C9orf3-203ENST00000375315 SETBP1Q9Y6X0 1596 aa15.33■□□□□ 0.04
C9orf3-203ENST00000375315 NME9Q86XW9 330 aa15.32■□□□□ 0.04
C9orf3-203ENST00000375315 SBNO2Q9Y2G9 1366 aa15.31■□□□□ 0.04
C9orf3-203ENST00000375315 FYB1O15117 783 aa15.3■□□□□ 0.04
C9orf3-203ENST00000375315 ABCC11Q96J66 1382 aa15.3■□□□□ 0.04
C9orf3-203ENST00000375315 ADAMTS13Q76LX8 1427 aa15.3■□□□□ 0.04
C9orf3-203ENST00000375315 MAPK8IP3Q9UPT6 1336 aa15.3■□□□□ 0.04
C9orf3-203ENST00000375315 NLRP1Q9C000 1473 aa15.29■□□□□ 0.04
C9orf3-203ENST00000375315 APAF1O14727 1248 aa15.29■□□□□ 0.04
C9orf3-203ENST00000375315 TERF1P54274 439 aa15.29■□□□□ 0.04
C9orf3-203ENST00000375315 NGDNQ8NEJ9 315 aaKnown RBP15.29■□□□□ 0.04
C9orf3-203ENST00000375315 ARHGEF28Q8N1W1 1705 aaKnown RBP15.29■□□□□ 0.04
C9orf3-203ENST00000375315 BLMP54132 1417 aaPredicted RBP15.28■□□□□ 0.04
C9orf3-203ENST00000375315 PRR36Q9H6K5 1346 aa15.28■□□□□ 0.04
C9orf3-203ENST00000375315 VIRMAQ69YN4 1812 aaKnown RBP15.28■□□□□ 0.04
C9orf3-203ENST00000375315 ZBTB7CA1YPR0 619 aa15.28■□□□□ 0.04
C9orf3-203ENST00000375315 CCDC61Q9Y6R9 512 aa15.28■□□□□ 0.04
C9orf3-203ENST00000375315 U2AF1L5P0DN76 240 aaPredicted RBP15.28■□□□□ 0.04
C9orf3-203ENST00000375315 U2AF1Q01081 240 aaKnown RBP eCLIP15.28■□□□□ 0.041e-6■■■■□ 22.3
C9orf3-203ENST00000375315 DDX11L8A8MPP1 907 aa15.28■□□□□ 0.04
C9orf3-203ENST00000375315 TBC1D2Q9BYX2 928 aa15.28■□□□□ 0.04
C9orf3-203ENST00000375315 CHMP5Q9NZZ3 219 aa15.28■□□□□ 0.04
C9orf3-203ENST00000375315 ATAD2Q6PL18 1390 aa15.27■□□□□ 0.04
C9orf3-203ENST00000375315 XPCQ01831 940 aaPredicted RBP15.27■□□□□ 0.04
C9orf3-203ENST00000375315 LMOD2Q6P5Q4 547 aa15.27■□□□□ 0.04
C9orf3-203ENST00000375315 SMAP1Q8IYB5 467 aaPredicted RBP15.27■□□□□ 0.04
C9orf3-203ENST00000375315 PTPRUQ92729 1446 aa15.27■□□□□ 0.04
C9orf3-203ENST00000375315 ANKRD36BQ8N2N9 1353 aa15.27■□□□□ 0.03
C9orf3-203ENST00000375315 PLEKHG1Q9ULL1 1385 aa15.27■□□□□ 0.03
C9orf3-203ENST00000375315 UBR1Q8IWV7 1749 aa15.27■□□□□ 0.03
C9orf3-203ENST00000375315 RRS1Q15050 365 aaKnown RBP15.27■□□□□ 0.03
C9orf3-203ENST00000375315 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.27■□□□□ 0.03
C9orf3-203ENST00000375315 TBX22Q9Y458 520 aa15.27■□□□□ 0.03
C9orf3-203ENST00000375315 SEC24BO95487 1268 aa15.26■□□□□ 0.03
C9orf3-203ENST00000375315 PDE4CQ08493 712 aa15.26■□□□□ 0.03
C9orf3-203ENST00000375315 MYOM1P52179 1685 aa15.25■□□□□ 0.03
C9orf3-203ENST00000375315 PPIP5K1Q6PFW1 1433 aa15.25■□□□□ 0.03
C9orf3-203ENST00000375315 OFD1O75665 1012 aa15.25■□□□□ 0.03
C9orf3-203ENST00000375315 ACEP12821 1306 aa15.24■□□□□ 0.03
C9orf3-203ENST00000375315 MTERF4Q7Z6M4 381 aaKnown RBP15.24■□□□□ 0.03
C9orf3-203ENST00000375315 TBC1D32Q96NH3 1257 aa15.23■□□□□ 0.03
C9orf3-203ENST00000375315 EMILIN1Q9Y6C2 1016 aa15.23■□□□□ 0.03
C9orf3-203ENST00000375315 CFAP53Q96M91 514 aa15.23■□□□□ 0.03
C9orf3-203ENST00000375315 FAM13BQ9NYF5 915 aa15.23■□□□□ 0.03
C9orf3-203ENST00000375315 ZSCAN30Q86W11 494 aa15.22■□□□□ 0.03
C9orf3-203ENST00000375315 NRXN3Q9Y4C0 1643 aa15.22■□□□□ 0.03
C9orf3-203ENST00000375315 RIPK4P57078 832 aa15.22■□□□□ 0.03
C9orf3-203ENST00000375315 MSNP26038 577 aaKnown RBP15.21■□□□□ 0.03
C9orf3-203ENST00000375315 PROSER2Q86WR7 435 aaPredicted RBP15.21■□□□□ 0.03
C9orf3-203ENST00000375315 HMOX1P09601 288 aa15.21■□□□□ 0.03
C9orf3-203ENST00000375315 CCDC173Q0VFZ6 552 aa15.21■□□□□ 0.03
C9orf3-203ENST00000375315 DUSP27Q5VZP5 1158 aa15.21■□□□□ 0.03
C9orf3-203ENST00000375315 SPRYD3Q8NCJ5 442 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms