RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 RNF17Q9BXT8 1623 aaKnown RBP11.53□□□□□ -0.56
UBR4-201ENST00000375218 SERPINA10Q9UK55 444 aa11.53□□□□□ -0.56
UBR4-201ENST00000375218 ARIH1Q9Y4X5 557 aaPredicted RBP11.53□□□□□ -0.56
UBR4-201ENST00000375218 PLEKHH2Q8IVE3 1493 aa11.53□□□□□ -0.56
UBR4-201ENST00000375218 VGLL3A8MV65 326 aa11.53□□□□□ -0.56
UBR4-201ENST00000375218 CCDC96Q2M329 555 aa11.53□□□□□ -0.56
UBR4-201ENST00000375218 RPRD2Q5VT52 1461 aaKnown RBP11.53□□□□□ -0.56
UBR4-201ENST00000375218 HNRNPMP52272 730 aaKnown RBP eCLIP11.53□□□□□ -0.56
UBR4-201ENST00000375218 PMM1Q92871 262 aa11.53□□□□□ -0.56
UBR4-201ENST00000375218 CDCA7Q9BWT1 371 aaPredicted RBP11.53□□□□□ -0.56
UBR4-201ENST00000375218 CLTCL1P53675 1640 aa11.52□□□□□ -0.56
UBR4-201ENST00000375218 TRPM1Q7Z4N2 1603 aa11.52□□□□□ -0.56
UBR4-201ENST00000375218 TSPOAP1O95153 1857 aa11.52□□□□□ -0.56
UBR4-201ENST00000375218 PARNO95453 639 aaKnown RBP11.52□□□□□ -0.57
UBR4-201ENST00000375218 RGS3P49796 1198 aa11.52□□□□□ -0.57
UBR4-201ENST00000375218 WDR78Q5VTH9 848 aa11.52□□□□□ -0.57
UBR4-201ENST00000375218 ZNF280DQ6N043 979 aa11.52□□□□□ -0.57
UBR4-201ENST00000375218 ZBTB12Q9Y330 459 aaPredicted RBP11.52□□□□□ -0.57
UBR4-201ENST00000375218 WDHD1O75717 1129 aaPredicted RBP11.52□□□□□ -0.57
UBR4-201ENST00000375218 ZMYND10O75800 440 aa11.52□□□□□ -0.57
UBR4-201ENST00000375218 ARHGAP5Q13017 1502 aa11.52□□□□□ -0.57
UBR4-201ENST00000375218 KCNA1Q09470 495 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 HSP90AA2PQ14568 343 aaPredicted RBP11.51□□□□□ -0.57
UBR4-201ENST00000375218 PRDM15P57071 1507 aaPredicted RBP11.51□□□□□ -0.57
UBR4-201ENST00000375218 METTL14Q9HCE5 456 aaKnown RBP11.51□□□□□ -0.57
UBR4-201ENST00000375218 SPHKAPQ2M3C7 1700 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 CCDC141Q6ZP82 1450 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 DIP2CQ9Y2E4 1556 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 GOLGA6CA6NDK9 693 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 GOLGA6BA6NDN3 693 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 GOLGA6DP0CG33 693 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 GOLGA6AQ9NYA3 693 aa11.51□□□□□ -0.57
UBR4-201ENST00000375218 C11orf95C9JLR9 678 aaPredicted RBP11.5□□□□□ -0.57
UBR4-201ENST00000375218 ZNF513Q8N8E2 541 aaPredicted RBP11.5□□□□□ -0.57
UBR4-201ENST00000375218 KRI1Q8N9T8 703 aaKnown RBP11.5□□□□□ -0.57
UBR4-201ENST00000375218 KIAA1107Q9UPP5 1409 aa11.5□□□□□ -0.57
UBR4-201ENST00000375218 GLI2P10070 1586 aa11.5□□□□□ -0.57
UBR4-201ENST00000375218 NBPF8Q3BBV2 869 aa11.49□□□□□ -0.57
UBR4-201ENST00000375218 PIK3C2BO00750 1634 aa11.49□□□□□ -0.57
UBR4-201ENST00000375218 ZNF518AQ6AHZ1 1483 aa11.49□□□□□ -0.57
UBR4-201ENST00000375218 ANP32BQ92688 251 aaKnown RBP11.48□□□□□ -0.57
UBR4-201ENST00000375218 SKIV2LQ15477 1246 aaKnown RBP11.48□□□□□ -0.57
UBR4-201ENST00000375218 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.48□□□□□ -0.57
UBR4-201ENST00000375218 ATP7AQ04656 1500 aa11.48□□□□□ -0.57
UBR4-201ENST00000375218 A6NJR5 290 aa11.47□□□□□ -0.57
UBR4-201ENST00000375218 ERCC3P19447 782 aa11.47□□□□□ -0.57
UBR4-201ENST00000375218 MMP14P50281 582 aa11.47□□□□□ -0.57
UBR4-201ENST00000375218 PROSER2Q86WR7 435 aaPredicted RBP11.47□□□□□ -0.57
UBR4-201ENST00000375218 CXorf38Q8TB03 319 aa11.47□□□□□ -0.57
UBR4-201ENST00000375218 STK10O94804 968 aaKnown RBP11.47□□□□□ -0.57
UBR4-201ENST00000375218 CCDC184Q52MB2 194 aa11.47□□□□□ -0.57
UBR4-201ENST00000375218 EIF2AK4Q9P2K8 1649 aaKnown RBP11.47□□□□□ -0.57
UBR4-201ENST00000375218 ONECUT3O60422 494 aaPredicted RBP11.46□□□□□ -0.57
UBR4-201ENST00000375218 SYNMO15061 1565 aa11.46□□□□□ -0.57
UBR4-201ENST00000375218 ZKSCAN2Q63HK3 967 aa11.46□□□□□ -0.57
UBR4-201ENST00000375218 FANCAO15360 1455 aa11.46□□□□□ -0.57
UBR4-201ENST00000375218 SETD1AO15047 1707 aaKnown RBP11.45□□□□□ -0.58
UBR4-201ENST00000375218 ATP10AO60312 1499 aa11.45□□□□□ -0.58
UBR4-201ENST00000375218 ZNF500O60304 480 aaPredicted RBP11.45□□□□□ -0.58
UBR4-201ENST00000375218 TCF3P15923 654 aa11.45□□□□□ -0.58
UBR4-201ENST00000375218 EGFL6Q8IUX8 553 aa11.45□□□□□ -0.58
UBR4-201ENST00000375218 G3BP2Q9UN86 482 aaKnown RBP11.45□□□□□ -0.58
UBR4-201ENST00000375218 CFAP65Q6ZU64 1925 aaKnown RBP11.45□□□□□ -0.58
UBR4-201ENST00000375218 KCNH8Q96L42 1107 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.44□□□□□ -0.583e-12■■■□□ 16.6
UBR4-201ENST00000375218 CTDP1Q9Y5B0 961 aaPredicted RBP11.44□□□□□ -0.58
UBR4-201ENST00000375218 MYOM1P52179 1685 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 ANKRD50Q9ULJ7 1429 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 GOLIM4O00461 696 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 IRF6O14896 467 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 NBPF20Q3BBV1 942 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 MADDQ8WXG6 1647 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 FRMD4BQ9Y2L6 1034 aa11.44□□□□□ -0.58
UBR4-201ENST00000375218 AFAP1Q8N556 730 aa11.43□□□□□ -0.58
UBR4-201ENST00000375218 TET3O43151 1660 aa11.43□□□□□ -0.58
UBR4-201ENST00000375218 A2MP01023 1474 aa11.43□□□□□ -0.58
UBR4-201ENST00000375218 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.43□□□□□ -0.584e-8■■■□□ 18
UBR4-201ENST00000375218 MPHOSPH9Q99550 1183 aa11.42□□□□□ -0.58
UBR4-201ENST00000375218 WWC3Q9ULE0 1092 aa11.42□□□□□ -0.58
UBR4-201ENST00000375218 HECW2Q9P2P5 1572 aa11.42□□□□□ -0.58
UBR4-201ENST00000375218 IQGAP1P46940 1657 aa11.41□□□□□ -0.58
UBR4-201ENST00000375218 ZC3H13Q5T200 1668 aaKnown RBP11.41□□□□□ -0.58
UBR4-201ENST00000375218 SCP2P22307 547 aa11.41□□□□□ -0.58
UBR4-201ENST00000375218 RFX1P22670 979 aa11.41□□□□□ -0.58
UBR4-201ENST00000375218 DMRT2Q9Y5R5 561 aa11.41□□□□□ -0.58
UBR4-201ENST00000375218 OSCARQ8IYS5 282 aa11.41□□□□□ -0.58
UBR4-201ENST00000375218 YEATS2Q9ULM3 1422 aa11.41□□□□□ -0.58
UBR4-201ENST00000375218 PPLO60437 1756 aa11.4□□□□□ -0.58
UBR4-201ENST00000375218 DUOX2Q9NRD8 1548 aa11.4□□□□□ -0.58
UBR4-201ENST00000375218 PPP1R15AO75807 674 aaPredicted RBP11.4□□□□□ -0.58
UBR4-201ENST00000375218 TSR1Q2NL82 804 aaKnown RBP11.4□□□□□ -0.58
UBR4-201ENST00000375218 DPH6Q7L8W6 267 aa11.4□□□□□ -0.58
UBR4-201ENST00000375218 PDE4DQ08499 809 aa11.4□□□□□ -0.58
UBR4-201ENST00000375218 KIF15Q9NS87 1388 aa11.4□□□□□ -0.58
UBR4-201ENST00000375218 PIK3R5Q8WYR1 880 aa11.4□□□□□ -0.58
UBR4-201ENST00000375218 UBA5Q9GZZ9 404 aa11.4□□□□□ -0.58
UBR4-201ENST00000375218 CFDP1Q9UEE9 299 aaPredicted RBP11.4□□□□□ -0.58
UBR4-201ENST00000375218 ZMYM4Q5VZL5 1548 aa11.4□□□□□ -0.59
UBR4-201ENST00000375218 POGZQ7Z3K3 1410 aa11.39□□□□□ -0.59
UBR4-201ENST00000375218 CCDC189A1A4V9 331 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms