RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 A0A1W2PP64 1363 aa19.22■□□□□ 0.67
TPM3-211ENST00000368531 USP6P35125 1406 aa19.22■□□□□ 0.67
TPM3-211ENST00000368531 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.21■□□□□ 0.67
TPM3-211ENST00000368531 PIAS4Q8N2W9 510 aaPredicted RBP19.21■□□□□ 0.67
TPM3-211ENST00000368531 ANKRD36BQ8N2N9 1353 aa19.2■□□□□ 0.66
TPM3-211ENST00000368531 NUTM2GQ5VZR2 741 aa19.2■□□□□ 0.66
TPM3-211ENST00000368531 SPATA31A3Q5VYP0 1347 aa19.2■□□□□ 0.66
TPM3-211ENST00000368531 SBNO1A3KN83 1393 aa19.19■□□□□ 0.66
TPM3-211ENST00000368531 PANK3Q9H999 370 aa19.19■□□□□ 0.66
TPM3-211ENST00000368531 TNS3Q68CZ2 1445 aa19.18■□□□□ 0.66
TPM3-211ENST00000368531 TTC21BQ7Z4L5 1316 aa19.18■□□□□ 0.66
TPM3-211ENST00000368531 ALS2Q96Q42 1657 aa19.17■□□□□ 0.66
TPM3-211ENST00000368531 ZNF316A6NFI3 1004 aaPredicted RBP19.17■□□□□ 0.66
TPM3-211ENST00000368531 ABTB2Q8N961 1025 aa19.17■□□□□ 0.66
TPM3-211ENST00000368531 CARD14Q9BXL6 1004 aa19.17■□□□□ 0.66
TPM3-211ENST00000368531 NRKQ7Z2Y5 1582 aa19.16■□□□□ 0.66
TPM3-211ENST00000368531 PNPLA6Q8IY17 1366 aa19.16■□□□□ 0.66
TPM3-211ENST00000368531 JCADQ9P266 1359 aa19.16■□□□□ 0.66
TPM3-211ENST00000368531 NUTM2BA6NNL0 878 aaPredicted RBP19.15■□□□□ 0.66
TPM3-211ENST00000368531 NUTM2EB1AL46 878 aaPredicted RBP19.15■□□□□ 0.66
TPM3-211ENST00000368531 NUTM2AQ8IVF1 878 aaPredicted RBP19.15■□□□□ 0.66
TPM3-211ENST00000368531 EDC4Q6P2E9 1401 aaKnown RBP19.15■□□□□ 0.66
TPM3-211ENST00000368531 SSH2Q76I76 1423 aa19.15■□□□□ 0.66
TPM3-211ENST00000368531 SHPRHQ149N8 1683 aa19.14■□□□□ 0.66
TPM3-211ENST00000368531 NME9Q86XW9 330 aa19.14■□□□□ 0.65
TPM3-211ENST00000368531 CABLES1Q8TDN4 633 aa19.14■□□□□ 0.65
TPM3-211ENST00000368531 ZRANB1Q9UGI0 708 aa19.14■□□□□ 0.65
TPM3-211ENST00000368531 NSD3Q9BZ95 1437 aa19.14■□□□□ 0.65
TPM3-211ENST00000368531 TTC21AQ8NDW8 1320 aa19.13■□□□□ 0.65
TPM3-211ENST00000368531 ARHGEF10O15013 1369 aa19.13■□□□□ 0.65
TPM3-211ENST00000368531 BRD4O60885 1362 aaPredicted RBP19.13■□□□□ 0.65
TPM3-211ENST00000368531 PIK3C2AO00443 1686 aa19.13■□□□□ 0.65
TPM3-211ENST00000368531 NLRP6P59044 892 aa19.12■□□□□ 0.65
TPM3-211ENST00000368531 ADRA2BP18089 450 aa19.11■□□□□ 0.65
TPM3-211ENST00000368531 HAP1P54257 671 aaPredicted RBP19.11■□□□□ 0.65
TPM3-211ENST00000368531 DDX10Q13206 875 aaKnown RBP19.11■□□□□ 0.65
TPM3-211ENST00000368531 KIF20BQ96Q89 1820 aa19.11■□□□□ 0.65
TPM3-211ENST00000368531 NLRP13Q86W25 1043 aa19.1■□□□□ 0.65
TPM3-211ENST00000368531 CNGB1Q14028 1251 aaPredicted RBP19.09■□□□□ 0.65
TPM3-211ENST00000368531 GGNBP2Q9H3C7 697 aa19.09■□□□□ 0.65
TPM3-211ENST00000368531 COL22A1Q8NFW1 1626 aaPredicted RBP19.09■□□□□ 0.65
TPM3-211ENST00000368531 SOX12O15370 315 aa19.08■□□□□ 0.64
TPM3-211ENST00000368531 KNSTRNQ9Y448 316 aa19.08■□□□□ 0.64
TPM3-211ENST00000368531 FYB1O15117 783 aa19.07■□□□□ 0.64
TPM3-211ENST00000368531 ADAMTS2O95450 1211 aa19.07■□□□□ 0.64
TPM3-211ENST00000368531 ABCA3Q99758 1704 aa19.07■□□□□ 0.64
TPM3-211ENST00000368531 MARF1Q9Y4F3 1742 aaKnown RBP19.07■□□□□ 0.64
TPM3-211ENST00000368531 MED1Q15648 1581 aaPredicted RBP19.06■□□□□ 0.64
TPM3-211ENST00000368531 SPATA31A6Q5VVP1 1343 aa19.06■□□□□ 0.64
TPM3-211ENST00000368531 PHRF1Q9P1Y6 1649 aaKnown RBP19.06■□□□□ 0.64
TPM3-211ENST00000368531 CRYBG1Q9Y4K1 1723 aa19.05■□□□□ 0.64
TPM3-211ENST00000368531 CGNL1Q0VF96 1302 aa19.05■□□□□ 0.64
TPM3-211ENST00000368531 MEX3CQ5U5Q3 659 aaKnown RBP19.04■□□□□ 0.64
TPM3-211ENST00000368531 COG3Q96JB2 828 aa19.04■□□□□ 0.64
TPM3-211ENST00000368531 LRP6O75581 1613 aa19.03■□□□□ 0.64
TPM3-211ENST00000368531 ZBTB7CA1YPR0 619 aa19.03■□□□□ 0.64
TPM3-211ENST00000368531 PER1O15534 1290 aaPredicted RBP19.03■□□□□ 0.64
TPM3-211ENST00000368531 ZC3H6P61129 1189 aaKnown RBP19.03■□□□□ 0.64
TPM3-211ENST00000368531 USP31Q70CQ4 1352 aa19.03■□□□□ 0.64
TPM3-211ENST00000368531 CC2D1BQ5T0F9 858 aaKnown RBP19.02■□□□□ 0.64
TPM3-211ENST00000368531 USP19O94966 1318 aa19.01■□□□□ 0.63
TPM3-211ENST00000368531 GCP02774 474 aa19.01■□□□□ 0.63
TPM3-211ENST00000368531 USP54Q70EL1 1684 aa19.01■□□□□ 0.63
TPM3-211ENST00000368531 OVOS2A0A0J9YW53 1432 aa19■□□□□ 0.63
TPM3-211ENST00000368531 OVOS2Q6IE36 1432 aa19■□□□□ 0.63
TPM3-211ENST00000368531 ANKRD26Q9UPS8 1709 aa19■□□□□ 0.63
TPM3-211ENST00000368531 FBLN1P23142 703 aa19■□□□□ 0.63
TPM3-211ENST00000368531 SLIT3O75094 1523 aa19■□□□□ 0.63
TPM3-211ENST00000368531 TNNT2P45379 298 aaPredicted RBP18.99■□□□□ 0.63
TPM3-211ENST00000368531 AMER1Q5JTC6 1135 aaPredicted RBP18.99■□□□□ 0.63
TPM3-211ENST00000368531 C8orf37Q96NL8 207 aa18.99■□□□□ 0.63
TPM3-211ENST00000368531 KCNH5Q8NCM2 988 aa18.98■□□□□ 0.63
TPM3-211ENST00000368531 CHRNA2Q15822 529 aa18.97■□□□□ 0.63
TPM3-211ENST00000368531 MORC1Q86VD1 984 aa18.97■□□□□ 0.63
TPM3-211ENST00000368531 PRDM11Q9NQV5 511 aa18.97■□□□□ 0.63
TPM3-211ENST00000368531 KIAA0232Q92628 1395 aa18.96■□□□□ 0.63
TPM3-211ENST00000368531 NGLY1Q96IV0 654 aa18.96■□□□□ 0.63
TPM3-211ENST00000368531 LTN1O94822 1766 aa18.96■□□□□ 0.63
TPM3-211ENST00000368531 FAM83GA6ND36 823 aa18.95■□□□□ 0.62
TPM3-211ENST00000368531 NFAT5O94916 1531 aa18.95■□□□□ 0.62
TPM3-211ENST00000368531 NSD2O96028 1365 aa18.94■□□□□ 0.62
TPM3-211ENST00000368531 MAP2P11137 1827 aaKnown RBP18.94■□□□□ 0.62
TPM3-211ENST00000368531 RRS1Q15050 365 aaKnown RBP18.93■□□□□ 0.62
TPM3-211ENST00000368531 RGPD5Q99666 1765 aa18.93■□□□□ 0.62
TPM3-211ENST00000368531 PLCH1Q4KWH8 1693 aa18.92■□□□□ 0.62
TPM3-211ENST00000368531 COL14A1Q05707 1796 aaKnown RBP18.91■□□□□ 0.62
TPM3-211ENST00000368531 ARHGEF25Q86VW2 580 aa18.91■□□□□ 0.62
TPM3-211ENST00000368531 PPM1GO15355 546 aaPredicted RBP18.9■□□□□ 0.62
TPM3-211ENST00000368531 AFF2P51816 1311 aa18.9■□□□□ 0.62
TPM3-211ENST00000368531 CPDO75976 1380 aa18.9■□□□□ 0.62
TPM3-211ENST00000368531 NPC1L1Q9UHC9 1359 aa18.9■□□□□ 0.62
TPM3-211ENST00000368531 AMPHP49418 695 aa18.89■□□□□ 0.61
TPM3-211ENST00000368531 BTG4Q9NY30 223 aa18.89■□□□□ 0.61
TPM3-211ENST00000368531 MAP3K19Q56UN5 1328 aa18.89■□□□□ 0.61
TPM3-211ENST00000368531 COL18A1P39060 1754 aa18.88■□□□□ 0.61
TPM3-211ENST00000368531 STRN4Q9NRL3 753 aa18.87■□□□□ 0.61
TPM3-211ENST00000368531 USP21Q9UK80 565 aa18.87■□□□□ 0.61
TPM3-211ENST00000368531 EMILIN1Q9Y6C2 1016 aa18.87■□□□□ 0.61
TPM3-211ENST00000368531 EVA1CP58658 441 aa18.86■□□□□ 0.61
TPM3-211ENST00000368531 AXIN2Q9Y2T1 843 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 462.5 ms