RNA–Protein interactions for RNA: ENST00000368436.1

CKS1B-202, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 2 BASIC

Gene CKS1B, Length 820 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-202ENST00000368436 TOPAZ1Q8N9V7 1692 aa23.29■■□□□ 1.32
CKS1B-202ENST00000368436 BLMP54132 1417 aaPredicted RBP23.29■■□□□ 1.32
CKS1B-202ENST00000368436 CCDC9Q9Y3X0 531 aaKnown RBP23.29■■□□□ 1.32
CKS1B-202ENST00000368436 CDK19Q9BWU1 502 aa23.28■■□□□ 1.32
CKS1B-202ENST00000368436 BTG4Q9NY30 223 aa23.28■■□□□ 1.32
CKS1B-202ENST00000368436 PAK3O75914 559 aaPredicted RBP23.27■■□□□ 1.32
CKS1B-202ENST00000368436 NBPF1Q3BBV0 1214 aa23.26■■□□□ 1.31
CKS1B-202ENST00000368436 ZRANB1Q9UGI0 708 aa23.26■■□□□ 1.31
CKS1B-202ENST00000368436 POLR3AO14802 1390 aaPredicted RBP23.25■■□□□ 1.31
CKS1B-202ENST00000368436 PHRF1Q9P1Y6 1649 aaKnown RBP23.24■■□□□ 1.31
CKS1B-202ENST00000368436 KRT27Q7Z3Y8 459 aa23.24■■□□□ 1.31
CKS1B-202ENST00000368436 CCDC61Q9Y6R9 512 aa23.24■■□□□ 1.31
CKS1B-202ENST00000368436 PLEKHG3A1L390 1219 aa23.22■■□□□ 1.31
CKS1B-202ENST00000368436 NBPF8Q3BBV2 869 aa23.21■■□□□ 1.31
CKS1B-202ENST00000368436 ACEP12821 1306 aa23.21■■□□□ 1.31
CKS1B-202ENST00000368436 SPATA31A5Q5VU36 1347 aa23.2■■□□□ 1.3
CKS1B-202ENST00000368436 SPATA31A7Q8IWB4 1347 aa23.2■■□□□ 1.3
CKS1B-202ENST00000368436 FAM98CQ17RN3 349 aaKnown RBP23.2■■□□□ 1.3
CKS1B-202ENST00000368436 PRDM11Q9NQV5 511 aa23.2■■□□□ 1.3
CKS1B-202ENST00000368436 DEFB132Q7Z7B7 95 aa23.18■■□□□ 1.3
CKS1B-202ENST00000368436 KIAA0232Q92628 1395 aa23.17■■□□□ 1.3
CKS1B-202ENST00000368436 THSD7AQ9UPZ6 1657 aa23.17■■□□□ 1.3
CKS1B-202ENST00000368436 SF3B2Q13435 895 aaKnown RBP23.17■■□□□ 1.3
CKS1B-202ENST00000368436 CENPJQ9HC77 1338 aaPredicted RBP23.16■■□□□ 1.3
CKS1B-202ENST00000368436 QRICH2Q9H0J4 1663 aa23.16■■□□□ 1.3
CKS1B-202ENST00000368436 A0A0G2JS52 829 aa23.15■■□□□ 1.3
CKS1B-202ENST00000368436 MYT1Q01538 1121 aa23.15■■□□□ 1.3
CKS1B-202ENST00000368436 L3MBTL2Q969R5 705 aa23.14■■□□□ 1.29
CKS1B-202ENST00000368436 CHRNA2Q15822 529 aa23.13■■□□□ 1.29
CKS1B-202ENST00000368436 NUTM2GQ5VZR2 741 aa23.13■■□□□ 1.29
CKS1B-202ENST00000368436 PPIP5K1Q6PFW1 1433 aa23.13■■□□□ 1.29
CKS1B-202ENST00000368436 NRKQ7Z2Y5 1582 aa23.13■■□□□ 1.29
CKS1B-202ENST00000368436 ZC3H6P61129 1189 aaKnown RBP23.12■■□□□ 1.29
CKS1B-202ENST00000368436 SRPK2P78362 688 aaKnown RBP23.12■■□□□ 1.29
CKS1B-202ENST00000368436 SPATA31A1Q5TZJ5 1347 aa23.11■■□□□ 1.29
CKS1B-202ENST00000368436 RGPD1P0DJD0 1748 aa23.11■■□□□ 1.29
CKS1B-202ENST00000368436 ABTB2Q8N961 1025 aa23.11■■□□□ 1.29
CKS1B-202ENST00000368436 TRPM1Q7Z4N2 1603 aa23.11■■□□□ 1.29
CKS1B-202ENST00000368436 CABP2Q9NPB3 220 aa23.1■■□□□ 1.29
CKS1B-202ENST00000368436 USP19O94966 1318 aa23.09■■□□□ 1.29
CKS1B-202ENST00000368436 BRD4O60885 1362 aaPredicted RBP23.09■■□□□ 1.29
CKS1B-202ENST00000368436 LMO7Q8WWI1 1683 aa23.09■■□□□ 1.29
CKS1B-202ENST00000368436 SIN3AQ96ST3 1273 aa23.08■■□□□ 1.29
CKS1B-202ENST00000368436 CPDO75976 1380 aa23.08■■□□□ 1.29
CKS1B-202ENST00000368436 CAMTA1Q9Y6Y1 1673 aa23.07■■□□□ 1.28
CKS1B-202ENST00000368436 BAG6P46379 1132 aa23.07■■□□□ 1.28
CKS1B-202ENST00000368436 STRN4Q9NRL3 753 aa23.07■■□□□ 1.28
CKS1B-202ENST00000368436 FAM182BQ5T319 152 aa23.06■■□□□ 1.28
CKS1B-202ENST00000368436 NLRP13Q86W25 1043 aa23.06■■□□□ 1.28
CKS1B-202ENST00000368436 SSH2Q76I76 1423 aa23.06■■□□□ 1.28
CKS1B-202ENST00000368436 TNS1Q9HBL0 1735 aaKnown RBP23.05■■□□□ 1.28
CKS1B-202ENST00000368436 CABP1Q9NZU7 370 aa23.04■■□□□ 1.28
CKS1B-202ENST00000368436 SRCAPQ6ZRS2 3230 aa23.04■■□□□ 1.28
CKS1B-202ENST00000368436 USP6P35125 1406 aa23.03■■□□□ 1.28
CKS1B-202ENST00000368436 GCP02774 474 aa23.03■■□□□ 1.28
CKS1B-202ENST00000368436 EVA1CP58658 441 aa23.03■■□□□ 1.28
CKS1B-202ENST00000368436 BARGINQ6ZT62 677 aa23.03■■□□□ 1.28
CKS1B-202ENST00000368436 DISP2A7MBM2 1401 aa23.01■■□□□ 1.27
CKS1B-202ENST00000368436 EVC2Q86UK5 1308 aa23.01■■□□□ 1.27
CKS1B-202ENST00000368436 EN1Q05925 392 aaPredicted RBP23■■□□□ 1.27
CKS1B-202ENST00000368436 NEUROD1Q13562 356 aa23■■□□□ 1.27
CKS1B-202ENST00000368436 LARP1Q6PKG0 1096 aaKnown RBP23■■□□□ 1.27
CKS1B-202ENST00000368436 SLIT3O75094 1523 aa22.99■■□□□ 1.27
CKS1B-202ENST00000368436 FAM196AQ6ZSG2 479 aa22.99■■□□□ 1.27
CKS1B-202ENST00000368436 USP35Q9P2H5 1018 aa22.99■■□□□ 1.27
CKS1B-202ENST00000368436 PIK3C2AO00443 1686 aa22.98■■□□□ 1.27
CKS1B-202ENST00000368436 ROCK2O75116 1388 aaKnown RBP22.98■■□□□ 1.27
CKS1B-202ENST00000368436 COL5A2P05997 1499 aaPredicted RBP22.98■■□□□ 1.27
CKS1B-202ENST00000368436 LRP5O75197 1615 aa22.97■■□□□ 1.27
CKS1B-202ENST00000368436 AKAP12Q02952 1782 aa22.97■■□□□ 1.27
CKS1B-202ENST00000368436 NLRP6P59044 892 aa22.97■■□□□ 1.27
CKS1B-202ENST00000368436 TCP11L2Q8N4U5 519 aa22.96■■□□□ 1.27
CKS1B-202ENST00000368436 THRAP3Q9Y2W1 955 aaKnown RBP22.96■■□□□ 1.27
CKS1B-202ENST00000368436 COL18A1P39060 1754 aa22.95■■□□□ 1.26
CKS1B-202ENST00000368436 PARP4Q9UKK3 1724 aaKnown RBP22.94■■□□□ 1.26
CKS1B-202ENST00000368436 AATKQ6ZMQ8 1374 aa22.94■■□□□ 1.26
CKS1B-202ENST00000368436 PSDA5PKW4 1024 aaPredicted RBP22.93■■□□□ 1.26
CKS1B-202ENST00000368436 TRIM37O94972 964 aa22.93■■□□□ 1.26
CKS1B-202ENST00000368436 PDE3BQ13370 1112 aa22.93■■□□□ 1.26
CKS1B-202ENST00000368436 ZNF692Q9BU19 519 aaPredicted RBP22.93■■□□□ 1.26
CKS1B-202ENST00000368436 CRB1P82279 1406 aa22.91■■□□□ 1.26
CKS1B-202ENST00000368436 EZH2Q15910 746 aaKnown RBP22.91■■□□□ 1.26
CKS1B-202ENST00000368436 CAMKK2Q96RR4 588 aa22.91■■□□□ 1.26
CKS1B-202ENST00000368436 TTC21BQ7Z4L5 1316 aa22.9■■□□□ 1.26
CKS1B-202ENST00000368436 CPSF1Q10570 1443 aaKnown RBP22.9■■□□□ 1.26
CKS1B-202ENST00000368436 PARD3Q8TEW0 1356 aa22.89■■□□□ 1.25
CKS1B-202ENST00000368436 SBNO2Q9Y2G9 1366 aa22.89■■□□□ 1.25
CKS1B-202ENST00000368436 RREB1Q92766 1687 aa22.87■■□□□ 1.25
CKS1B-202ENST00000368436 TTC21AQ8NDW8 1320 aa22.87■■□□□ 1.25
CKS1B-202ENST00000368436 RGPD5Q99666 1765 aa22.87■■□□□ 1.25
CKS1B-202ENST00000368436 ZBTB7CA1YPR0 619 aa22.87■■□□□ 1.25
CKS1B-202ENST00000368436 APBA3O96018 575 aa22.87■■□□□ 1.25
CKS1B-202ENST00000368436 MON2Q7Z3U7 1717 aa22.87■■□□□ 1.25
CKS1B-202ENST00000368436 PEAK1Q9H792 1746 aa22.85■■□□□ 1.25
CKS1B-202ENST00000368436 WNK3Q9BYP7 1800 aa22.85■■□□□ 1.25
CKS1B-202ENST00000368436 R3HDM1Q15032 1099 aaKnown RBP22.85■■□□□ 1.25
CKS1B-202ENST00000368436 ARHGEF25Q86VW2 580 aa22.85■■□□□ 1.25
CKS1B-202ENST00000368436 KCNH5Q8NCM2 988 aa22.85■■□□□ 1.25
CKS1B-202ENST00000368436 AXIN2Q9Y2T1 843 aa22.85■■□□□ 1.25
CKS1B-202ENST00000368436 LRRC37A3O60309 1634 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms