RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 USP6P35125 1406 aa23.85■■□□□ 1.41
CLN3-203ENST00000357806 PLCH1Q4KWH8 1693 aa23.85■■□□□ 1.41
CLN3-203ENST00000357806 RGS17Q9UGC6 210 aaPredicted RBP23.85■■□□□ 1.41
CLN3-203ENST00000357806 C8orf37Q96NL8 207 aa23.84■■□□□ 1.41
CLN3-203ENST00000357806 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.84■■□□□ 1.41
CLN3-203ENST00000357806 PIK3C2AO00443 1686 aa23.83■■□□□ 1.41
CLN3-203ENST00000357806 NWD2Q9ULI1 1742 aa23.82■■□□□ 1.4
CLN3-203ENST00000357806 HAP1P54257 671 aaPredicted RBP23.82■■□□□ 1.4
CLN3-203ENST00000357806 PUS7Q96PZ0 661 aaKnown RBP23.82■■□□□ 1.4
CLN3-203ENST00000357806 AFF2P51816 1311 aa23.81■■□□□ 1.4
CLN3-203ENST00000357806 TMF1P82094 1093 aa23.81■■□□□ 1.4
CLN3-203ENST00000357806 CPSF1Q10570 1443 aaKnown RBP23.81■■□□□ 1.4
CLN3-203ENST00000357806 ZNF772Q68DY9 489 aaPredicted RBP23.81■■□□□ 1.4
CLN3-203ENST00000357806 MYOM1P52179 1685 aa23.8■■□□□ 1.4
CLN3-203ENST00000357806 NINLQ9Y2I6 1382 aa23.79■■□□□ 1.4
CLN3-203ENST00000357806 CABLES1Q8TDN4 633 aa23.79■■□□□ 1.4
CLN3-203ENST00000357806 NGLY1Q96IV0 654 aa23.79■■□□□ 1.4
CLN3-203ENST00000357806 COL14A1Q05707 1796 aaKnown RBP23.78■■□□□ 1.4
CLN3-203ENST00000357806 PLEKHG5O94827 1062 aa23.78■■□□□ 1.4
CLN3-203ENST00000357806 ILDR2Q71H61 639 aa23.78■■□□□ 1.4
CLN3-203ENST00000357806 ZNF692Q9BU19 519 aaPredicted RBP23.78■■□□□ 1.4
CLN3-203ENST00000357806 CD163L1Q9NR16 1453 aa23.78■■□□□ 1.4
CLN3-203ENST00000357806 SSH2Q76I76 1423 aa23.77■■□□□ 1.4
CLN3-203ENST00000357806 KTN1Q86UP2 1357 aaKnown RBP23.77■■□□□ 1.4
CLN3-203ENST00000357806 TMC1Q8TDI8 760 aa23.76■■□□□ 1.39
CLN3-203ENST00000357806 USP54Q70EL1 1684 aa23.76■■□□□ 1.39
CLN3-203ENST00000357806 EIF4G2P78344 907 aaKnown RBP eCLIP23.75■■□□□ 1.391e-9■■■■□ 22.4
CLN3-203ENST00000357806 POTEAQ6S8J7 498 aa23.75■■□□□ 1.39
CLN3-203ENST00000357806 ABTB2Q8N961 1025 aa23.75■■□□□ 1.39
CLN3-203ENST00000357806 NRAPQ86VF7 1730 aa23.74■■□□□ 1.39
CLN3-203ENST00000357806 CDCA8Q53HL2 280 aa23.74■■□□□ 1.39
CLN3-203ENST00000357806 FNBP4Q8N3X1 1017 aaPredicted RBP23.73■■□□□ 1.39
CLN3-203ENST00000357806 SLIT2O94813 1529 aa23.73■■□□□ 1.39
CLN3-203ENST00000357806 NUTM2GQ5VZR2 741 aa23.72■■□□□ 1.39
CLN3-203ENST00000357806 HDGFL2Q7Z4V5 671 aaPredicted RBP23.72■■□□□ 1.39
CLN3-203ENST00000357806 A0A1W2PP64 1363 aa23.72■■□□□ 1.39
CLN3-203ENST00000357806 TTC21AQ8NDW8 1320 aa23.71■■□□□ 1.39
CLN3-203ENST00000357806 SLIT3O75094 1523 aa23.71■■□□□ 1.39
CLN3-203ENST00000357806 SLC12A5Q9H2X9 1139 aa23.71■■□□□ 1.39
CLN3-203ENST00000357806 TERF2IPQ9NYB0 399 aa23.71■■□□□ 1.39
CLN3-203ENST00000357806 USP21Q9UK80 565 aa23.71■■□□□ 1.39
CLN3-203ENST00000357806 USP19O94966 1318 aa23.7■■□□□ 1.38
CLN3-203ENST00000357806 TTC21BQ7Z4L5 1316 aa23.7■■□□□ 1.38
CLN3-203ENST00000357806 EDC4Q6P2E9 1401 aaKnown RBP23.7■■□□□ 1.38
CLN3-203ENST00000357806 HSPA5P11021 654 aaKnown RBP23.69■■□□□ 1.38
CLN3-203ENST00000357806 NLRP13Q86W25 1043 aa23.69■■□□□ 1.38
CLN3-203ENST00000357806 BCL9LQ86UU0 1499 aa23.69■■□□□ 1.38
CLN3-203ENST00000357806 KIF20BQ96Q89 1820 aa23.69■■□□□ 1.38
CLN3-203ENST00000357806 ANKRD36BQ8N2N9 1353 aa23.67■■□□□ 1.38
CLN3-203ENST00000357806 ATRNO75882 1429 aa23.66■■□□□ 1.38
CLN3-203ENST00000357806 NLRP6P59044 892 aa23.65■■□□□ 1.38
CLN3-203ENST00000357806 QTRT2Q9H974 415 aaKnown RBP23.65■■□□□ 1.38
CLN3-203ENST00000357806 TRPC5Q9UL62 973 aaPredicted RBP23.65■■□□□ 1.38
CLN3-203ENST00000357806 LMO7Q8WWI1 1683 aa23.65■■□□□ 1.38
CLN3-203ENST00000357806 LTN1O94822 1766 aa23.64■■□□□ 1.38
CLN3-203ENST00000357806 CDK12Q9NYV4 1490 aaPredicted RBP23.64■■□□□ 1.38
CLN3-203ENST00000357806 KIAA0232Q92628 1395 aa23.64■■□□□ 1.37
CLN3-203ENST00000357806 RXRBP28702 533 aa23.63■■□□□ 1.37
CLN3-203ENST00000357806 UNC5CLQ8IV45 518 aa23.62■■□□□ 1.37
CLN3-203ENST00000357806 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.62■■□□□ 1.37
CLN3-203ENST00000357806 PRDM11Q9NQV5 511 aa23.62■■□□□ 1.37
CLN3-203ENST00000357806 FAM83GA6ND36 823 aa23.62■■□□□ 1.37
CLN3-203ENST00000357806 CPDO75976 1380 aa23.61■■□□□ 1.37
CLN3-203ENST00000357806 RGPD5Q99666 1765 aa23.61■■□□□ 1.37
CLN3-203ENST00000357806 GCP02774 474 aa23.61■■□□□ 1.37
CLN3-203ENST00000357806 RBM6P78332 1123 aaKnown RBP23.61■■□□□ 1.37
CLN3-203ENST00000357806 GLI3P10071 1580 aa23.6■■□□□ 1.37
CLN3-203ENST00000357806 ZC3H6P61129 1189 aaKnown RBP23.6■■□□□ 1.37
CLN3-203ENST00000357806 NFAT5O94916 1531 aa23.6■■□□□ 1.37
CLN3-203ENST00000357806 USP31Q70CQ4 1352 aa23.59■■□□□ 1.37
CLN3-203ENST00000357806 COL18A1P39060 1754 aa23.59■■□□□ 1.37
CLN3-203ENST00000357806 BTG4Q9NY30 223 aa23.58■■□□□ 1.37
CLN3-203ENST00000357806 OVOS2A0A0J9YW53 1432 aa23.57■■□□□ 1.36
CLN3-203ENST00000357806 OVOS2Q6IE36 1432 aa23.57■■□□□ 1.36
CLN3-203ENST00000357806 NME9Q86XW9 330 aa23.56■■□□□ 1.36
CLN3-203ENST00000357806 KCNH5Q8NCM2 988 aa23.56■■□□□ 1.36
CLN3-203ENST00000357806 POLR3GLQ9BT43 218 aa23.56■■□□□ 1.36
CLN3-203ENST00000357806 RGS12O14924 1447 aa23.56■■□□□ 1.36
CLN3-203ENST00000357806 CHRNA2Q15822 529 aa23.56■■□□□ 1.36
CLN3-203ENST00000357806 ANKRD26Q9UPS8 1709 aa23.54■■□□□ 1.36
CLN3-203ENST00000357806 CAMTA1Q9Y6Y1 1673 aa23.54■■□□□ 1.36
CLN3-203ENST00000357806 ABCC6O95255 1503 aa23.54■■□□□ 1.36
CLN3-203ENST00000357806 SOCS7O14512 581 aa23.54■■□□□ 1.36
CLN3-203ENST00000357806 VPS72Q15906 364 aa23.54■■□□□ 1.36
CLN3-203ENST00000357806 GJD4Q96KN9 370 aaPredicted RBP23.54■■□□□ 1.36
CLN3-203ENST00000357806 BRWD3Q6RI45 1802 aa23.53■■□□□ 1.36
CLN3-203ENST00000357806 ZRANB1Q9UGI0 708 aa23.52■■□□□ 1.36
CLN3-203ENST00000357806 NSD3Q9BZ95 1437 aa23.5■■□□□ 1.35
CLN3-203ENST00000357806 SOX12O15370 315 aa23.5■■□□□ 1.35
CLN3-203ENST00000357806 CCDC9Q9Y3X0 531 aaKnown RBP23.5■■□□□ 1.35
CLN3-203ENST00000357806 ZBTB7CA1YPR0 619 aa23.49■■□□□ 1.35
CLN3-203ENST00000357806 AATKQ6ZMQ8 1374 aa23.49■■□□□ 1.35
CLN3-203ENST00000357806 COL5A2P05997 1499 aaPredicted RBP23.49■■□□□ 1.35
CLN3-203ENST00000357806 WNK3Q9BYP7 1800 aa23.49■■□□□ 1.35
CLN3-203ENST00000357806 C11orf95C9JLR9 678 aaPredicted RBP23.47■■□□□ 1.35
CLN3-203ENST00000357806 COG3Q96JB2 828 aa23.47■■□□□ 1.35
CLN3-203ENST00000357806 ARHGEF25Q86VW2 580 aa23.46■■□□□ 1.35
CLN3-203ENST00000357806 STRN4Q9NRL3 753 aa23.46■■□□□ 1.35
CLN3-203ENST00000357806 THSD7AQ9UPZ6 1657 aa23.45■■□□□ 1.34
CLN3-203ENST00000357806 FAM208AQ9UK61 1670 aaKnown RBP23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms