RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.9■■■■□ 3.18
SSBP3-202ENST00000357475 KIF20BQ96Q89 1820 aa34.88■■■■□ 3.17
SSBP3-202ENST00000357475 TTC21BQ7Z4L5 1316 aa34.88■■■■□ 3.17
SSBP3-202ENST00000357475 PHLPP1O60346 1717 aa34.87■■■■□ 3.17
SSBP3-202ENST00000357475 PIK3C2AO00443 1686 aa34.86■■■■□ 3.17
SSBP3-202ENST00000357475 SOS2Q07890 1332 aaPredicted RBP34.85■■■■□ 3.17
SSBP3-202ENST00000357475 PAK3O75914 559 aaPredicted RBP34.85■■■■□ 3.17
SSBP3-202ENST00000357475 CNGB1Q14028 1251 aaPredicted RBP34.84■■■■□ 3.17
SSBP3-202ENST00000357475 KNSTRNQ9Y448 316 aa34.84■■■■□ 3.17
SSBP3-202ENST00000357475 ALS2Q96Q42 1657 aa34.84■■■■□ 3.17
SSBP3-202ENST00000357475 NME9Q86XW9 330 aa34.83■■■■□ 3.17
SSBP3-202ENST00000357475 ZRANB1Q9UGI0 708 aa34.83■■■■□ 3.17
SSBP3-202ENST00000357475 AMER1Q5JTC6 1135 aaPredicted RBP34.82■■■■□ 3.16
SSBP3-202ENST00000357475 COL16A1Q07092 1604 aaPredicted RBP34.81■■■■□ 3.16
SSBP3-202ENST00000357475 MARF1Q9Y4F3 1742 aaKnown RBP34.8■■■■□ 3.16
SSBP3-202ENST00000357475 FYB1O15117 783 aa34.79■■■■□ 3.16
SSBP3-202ENST00000357475 CGNL1Q0VF96 1302 aa34.78■■■■□ 3.16
SSBP3-202ENST00000357475 SBNO1A3KN83 1393 aa34.78■■■■□ 3.16
SSBP3-202ENST00000357475 NUTM2GQ5VZR2 741 aa34.77■■■■□ 3.16
SSBP3-202ENST00000357475 GGNBP2Q9H3C7 697 aa34.77■■■■□ 3.16
SSBP3-202ENST00000357475 BRD4O60885 1362 aaPredicted RBP34.77■■■■□ 3.16
SSBP3-202ENST00000357475 CC2D1BQ5T0F9 858 aaKnown RBP34.76■■■■□ 3.16
SSBP3-202ENST00000357475 TTC21AQ8NDW8 1320 aa34.76■■■■□ 3.16
SSBP3-202ENST00000357475 TNS3Q68CZ2 1445 aa34.76■■■■□ 3.16
SSBP3-202ENST00000357475 ANKRD26Q9UPS8 1709 aa34.76■■■■□ 3.16
SSBP3-202ENST00000357475 SPATA31A3Q5VYP0 1347 aa34.76■■■■□ 3.15
SSBP3-202ENST00000357475 LMOD2Q6P5Q4 547 aa34.74■■■■□ 3.15
SSBP3-202ENST00000357475 ABTB2Q8N961 1025 aa34.74■■■■□ 3.15
SSBP3-202ENST00000357475 DIEXFQ68CQ4 756 aaKnown RBP34.72■■■■□ 3.15
SSBP3-202ENST00000357475 USP54Q70EL1 1684 aa34.71■■■■□ 3.15
SSBP3-202ENST00000357475 OVOS2A0A0J9YW53 1432 aa34.7■■■■□ 3.14
SSBP3-202ENST00000357475 OVOS2Q6IE36 1432 aa34.7■■■■□ 3.14
SSBP3-202ENST00000357475 PLEKHG5O94827 1062 aa34.69■■■■□ 3.14
SSBP3-202ENST00000357475 NPC1L1Q9UHC9 1359 aa34.69■■■■□ 3.14
SSBP3-202ENST00000357475 HSPA1LP34931 641 aa34.67■■■■□ 3.14
SSBP3-202ENST00000357475 NLRP6P59044 892 aa34.67■■■■□ 3.14
SSBP3-202ENST00000357475 USP31Q70CQ4 1352 aa34.67■■■■□ 3.14
SSBP3-202ENST00000357475 NSD2O96028 1365 aa34.66■■■■□ 3.14
SSBP3-202ENST00000357475 CRYBG1Q9Y4K1 1723 aa34.66■■■■□ 3.14
SSBP3-202ENST00000357475 MED1Q15648 1581 aaPredicted RBP34.66■■■■□ 3.14
SSBP3-202ENST00000357475 LRRC59Q96AG4 307 aaKnown RBP34.64■■■■□ 3.14
SSBP3-202ENST00000357475 ARHGEF10O15013 1369 aa34.62■■■■□ 3.13
SSBP3-202ENST00000357475 COG3Q96JB2 828 aa34.62■■■■□ 3.13
SSBP3-202ENST00000357475 CABLES1Q8TDN4 633 aa34.61■■■■□ 3.13
SSBP3-202ENST00000357475 ABCA3Q99758 1704 aa34.61■■■■□ 3.13
SSBP3-202ENST00000357475 PHRF1Q9P1Y6 1649 aaKnown RBP34.61■■■■□ 3.13
SSBP3-202ENST00000357475 FBLN1P23142 703 aa34.6■■■■□ 3.13
SSBP3-202ENST00000357475 PNPLA6Q8IY17 1366 aa34.6■■■■□ 3.13
SSBP3-202ENST00000357475 TNNT2P45379 298 aaPredicted RBP34.6■■■■□ 3.13
SSBP3-202ENST00000357475 MORC1Q86VD1 984 aa34.6■■■■□ 3.13
SSBP3-202ENST00000357475 PARD3Q8TEW0 1356 aa34.59■■■■□ 3.13
SSBP3-202ENST00000357475 COL22A1Q8NFW1 1626 aaPredicted RBP34.59■■■■□ 3.13
SSBP3-202ENST00000357475 SLIT3O75094 1523 aa34.58■■■■□ 3.13
SSBP3-202ENST00000357475 SOX12O15370 315 aa34.58■■■■□ 3.13
SSBP3-202ENST00000357475 NLRP13Q86W25 1043 aa34.58■■■■□ 3.13
SSBP3-202ENST00000357475 FBXO41Q8TF61 875 aa34.58■■■■□ 3.13
SSBP3-202ENST00000357475 USP19O94966 1318 aa34.58■■■■□ 3.13
SSBP3-202ENST00000357475 PRKRIP1Q9H875 184 aaPredicted RBP34.57■■■■□ 3.12
SSBP3-202ENST00000357475 SHPRHQ149N8 1683 aa34.56■■■■□ 3.12
SSBP3-202ENST00000357475 NFAT5O94916 1531 aa34.53■■■■□ 3.12
SSBP3-202ENST00000357475 ANP32CO43423 234 aa34.52■■■■□ 3.12
SSBP3-202ENST00000357475 MAP2P11137 1827 aaKnown RBP34.52■■■■□ 3.12
SSBP3-202ENST00000357475 GCP02774 474 aa34.49■■■■□ 3.11
SSBP3-202ENST00000357475 JCADQ9P266 1359 aa34.48■■■■□ 3.11
SSBP3-202ENST00000357475 LTN1O94822 1766 aa34.48■■■■□ 3.11
SSBP3-202ENST00000357475 RALBP1Q15311 655 aa34.47■■■■□ 3.11
SSBP3-202ENST00000357475 RRS1Q15050 365 aaKnown RBP34.45■■■■□ 3.11
SSBP3-202ENST00000357475 PPP2R1AP30153 589 aa34.45■■■■□ 3.1
SSBP3-202ENST00000357475 PEAK1Q9H792 1746 aa34.44■■■■□ 3.1
SSBP3-202ENST00000357475 AATKQ6ZMQ8 1374 aa34.42■■■■□ 3.1
SSBP3-202ENST00000357475 ZC3H6P61129 1189 aaKnown RBP34.42■■■■□ 3.1
SSBP3-202ENST00000357475 MIER1Q8N108 512 aa34.42■■■■□ 3.1
SSBP3-202ENST00000357475 KCNH5Q8NCM2 988 aa34.41■■■■□ 3.1
SSBP3-202ENST00000357475 EMILIN1Q9Y6C2 1016 aa34.41■■■■□ 3.1
SSBP3-202ENST00000357475 POLKQ9UBT6 870 aa34.4■■■■□ 3.1
SSBP3-202ENST00000357475 MAP3K19Q56UN5 1328 aa34.39■■■■□ 3.1
SSBP3-202ENST00000357475 MYBBP1AQ9BQG0 1328 aaKnown RBP34.39■■■■□ 3.1
SSBP3-202ENST00000357475 NUTM2BA6NNL0 878 aaPredicted RBP34.39■■■■□ 3.1
SSBP3-202ENST00000357475 NUTM2EB1AL46 878 aaPredicted RBP34.39■■■■□ 3.1
SSBP3-202ENST00000357475 NUTM2AQ8IVF1 878 aaPredicted RBP34.39■■■■□ 3.1
SSBP3-202ENST00000357475 HAP1P54257 671 aaPredicted RBP34.38■■■■□ 3.09
SSBP3-202ENST00000357475 ZBTB7CA1YPR0 619 aa34.37■■■■□ 3.09
SSBP3-202ENST00000357475 KIAA0232Q92628 1395 aa34.37■■■■□ 3.09
SSBP3-202ENST00000357475 LRP6O75581 1613 aa34.35■■■■□ 3.09
SSBP3-202ENST00000357475 MTHFSP49914 203 aa34.35■■■■□ 3.09
SSBP3-202ENST00000357475 ARHGEF25Q86VW2 580 aa34.35■■■■□ 3.09
SSBP3-202ENST00000357475 SMG6Q86US8 1419 aaKnown RBP34.35■■■■□ 3.09
SSBP3-202ENST00000357475 RGPD5Q99666 1765 aa34.34■■■■□ 3.09
SSBP3-202ENST00000357475 PPM1GO15355 546 aaPredicted RBP34.34■■■■□ 3.09
SSBP3-202ENST00000357475 CCDC184Q52MB2 194 aa34.34■■■■□ 3.09
SSBP3-202ENST00000357475 COL18A1P39060 1754 aa34.33■■■■□ 3.09
SSBP3-202ENST00000357475 CHRNA2Q15822 529 aa34.32■■■■□ 3.08
SSBP3-202ENST00000357475 CPDO75976 1380 aa34.31■■■■□ 3.08
SSBP3-202ENST00000357475 ADAMTS2O95450 1211 aa34.31■■■■□ 3.08
SSBP3-202ENST00000357475 SPATA31A6Q5VVP1 1343 aa34.3■■■■□ 3.08
SSBP3-202ENST00000357475 CDK12Q9NYV4 1490 aaPredicted RBP34.27■■■■□ 3.08
SSBP3-202ENST00000357475 AMPHP49418 695 aa34.27■■■■□ 3.08
SSBP3-202ENST00000357475 LMO7Q8WWI1 1683 aa34.26■■■■□ 3.08
SSBP3-202ENST00000357475 FAM83GA6ND36 823 aa34.26■■■■□ 3.08
SSBP3-202ENST00000357475 HOXC9P31274 260 aa34.26■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms