RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 ANKARQ7Z5J8 1434 aa13.4□□□□□ -0.26
SYNE1-203ENST00000354674 ADGRL3Q9HAR2 1447 aa13.4□□□□□ -0.26
SYNE1-203ENST00000354674 TERF2IPQ9NYB0 399 aa13.4□□□□□ -0.26
SYNE1-203ENST00000354674 ITSN1Q15811 1721 aa13.4□□□□□ -0.27
SYNE1-203ENST00000354674 MON2Q7Z3U7 1717 aa13.39□□□□□ -0.27
SYNE1-203ENST00000354674 CCDC184Q52MB2 194 aa13.39□□□□□ -0.27
SYNE1-203ENST00000354674 CC2D1BQ5T0F9 858 aaKnown RBP13.39□□□□□ -0.27
SYNE1-203ENST00000354674 NCOA3Q9Y6Q9 1424 aa13.39□□□□□ -0.27
SYNE1-203ENST00000354674 NSD2O96028 1365 aa13.39□□□□□ -0.27
SYNE1-203ENST00000354674 IPO9Q96P70 1041 aaKnown RBP13.38□□□□□ -0.27
SYNE1-203ENST00000354674 PLEKHG3A1L390 1219 aa13.38□□□□□ -0.27
SYNE1-203ENST00000354674 BRD4O60885 1362 aaPredicted RBP13.38□□□□□ -0.27
SYNE1-203ENST00000354674 ANKRD26Q9UPS8 1709 aa13.37□□□□□ -0.27
SYNE1-203ENST00000354674 HDGFL2Q7Z4V5 671 aaPredicted RBP13.37□□□□□ -0.27
SYNE1-203ENST00000354674 CGNL1Q0VF96 1302 aa13.37□□□□□ -0.27
SYNE1-203ENST00000354674 NRKQ7Z2Y5 1582 aa13.36□□□□□ -0.27
SYNE1-203ENST00000354674 RGPD8O14715 1765 aaPredicted RBP13.36□□□□□ -0.27
SYNE1-203ENST00000354674 NLRP13Q86W25 1043 aa13.36□□□□□ -0.27
SYNE1-203ENST00000354674 ARXQ96QS3 562 aa13.36□□□□□ -0.27
SYNE1-203ENST00000354674 EDC4Q6P2E9 1401 aaKnown RBP13.36□□□□□ -0.27
SYNE1-203ENST00000354674 PPP4R2Q9NY27 417 aa13.35□□□□□ -0.27
SYNE1-203ENST00000354674 KIF20BQ96Q89 1820 aa13.35□□□□□ -0.27
SYNE1-203ENST00000354674 POLR3AO14802 1390 aaPredicted RBP13.35□□□□□ -0.27
SYNE1-203ENST00000354674 ZNF692Q9BU19 519 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-203ENST00000354674 MRS2Q9HD23 443 aa13.34□□□□□ -0.27
SYNE1-203ENST00000354674 PPP2R1AP30153 589 aa13.33□□□□□ -0.28
SYNE1-203ENST00000354674 SSH2Q76I76 1423 aa13.33□□□□□ -0.28
SYNE1-203ENST00000354674 AEBP2Q6ZN18 517 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-203ENST00000354674 PROSER2Q86WR7 435 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-203ENST00000354674 XIRP1Q702N8 1843 aaKnown RBP13.33□□□□□ -0.28
SYNE1-203ENST00000354674 DCCP43146 1447 aa13.32□□□□□ -0.28
SYNE1-203ENST00000354674 FYB1O15117 783 aa13.32□□□□□ -0.28
SYNE1-203ENST00000354674 GLIPR1L2Q4G1C9 344 aa13.32□□□□□ -0.28
SYNE1-203ENST00000354674 ACEP12821 1306 aa13.31□□□□□ -0.28
SYNE1-203ENST00000354674 USP6P35125 1406 aa13.31□□□□□ -0.28
SYNE1-203ENST00000354674 RBM33Q96EV2 1170 aaKnown RBP13.31□□□□□ -0.28
SYNE1-203ENST00000354674 TMEM94Q12767 1356 aa13.31□□□□□ -0.28
SYNE1-203ENST00000354674 PNISRQ8TF01 805 aaKnown RBP13.31□□□□□ -0.28
SYNE1-203ENST00000354674 DMRT2Q9Y5R5 561 aa13.31□□□□□ -0.28
SYNE1-203ENST00000354674 C19orf44Q9H6X5 657 aa13.3□□□□□ -0.28
SYNE1-203ENST00000354674 LRRC7Q96NW7 1537 aa13.3□□□□□ -0.28
SYNE1-203ENST00000354674 NUTM2FA1L443 756 aa13.29□□□□□ -0.28
SYNE1-203ENST00000354674 SLC4A3P48751 1232 aa13.29□□□□□ -0.28
SYNE1-203ENST00000354674 MORC1Q86VD1 984 aa13.29□□□□□ -0.28
SYNE1-203ENST00000354674 INSRP06213 1382 aa13.28□□□□□ -0.28
SYNE1-203ENST00000354674 USP54Q70EL1 1684 aa13.27□□□□□ -0.29
SYNE1-203ENST00000354674 TTC21BQ7Z4L5 1316 aa13.27□□□□□ -0.29
SYNE1-203ENST00000354674 ZNF335Q9H4Z2 1342 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-203ENST00000354674 FRAT1Q92837 279 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-203ENST00000354674 GGNBP2Q9H3C7 697 aa13.26□□□□□ -0.29
SYNE1-203ENST00000354674 C1orf167Q5SNV9 1468 aa13.26□□□□□ -0.29
SYNE1-203ENST00000354674 MST1RQ04912 1400 aa13.26□□□□□ -0.29
SYNE1-203ENST00000354674 KIF1AQ12756 1690 aa13.26□□□□□ -0.29
SYNE1-203ENST00000354674 FAM9BQ8IZU0 186 aa13.26□□□□□ -0.29
SYNE1-203ENST00000354674 PMFBP1Q8TBY8 1022 aa13.26□□□□□ -0.29
SYNE1-203ENST00000354674 TTC21AQ8NDW8 1320 aa13.25□□□□□ -0.29
SYNE1-203ENST00000354674 C14orf37Q86TY3 774 aa13.25□□□□□ -0.29
SYNE1-203ENST00000354674 PHF8Q9UPP1 1060 aa13.25□□□□□ -0.29
SYNE1-203ENST00000354674 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNE1-203ENST00000354674 OVOS2A0A0J9YW53 1432 aa13.24□□□□□ -0.29
SYNE1-203ENST00000354674 OVOS2Q6IE36 1432 aa13.24□□□□□ -0.29
SYNE1-203ENST00000354674 NME9Q86XW9 330 aa13.24□□□□□ -0.29
SYNE1-203ENST00000354674 USP31Q70CQ4 1352 aa13.24□□□□□ -0.29
SYNE1-203ENST00000354674 NGDNQ8NEJ9 315 aaKnown RBP13.24□□□□□ -0.29
SYNE1-203ENST00000354674 RSPH6AQ9H0K4 717 aa13.24□□□□□ -0.29
SYNE1-203ENST00000354674 PIK3C2AO00443 1686 aa13.24□□□□□ -0.29
SYNE1-203ENST00000354674 AATKQ6ZMQ8 1374 aa13.23□□□□□ -0.29
SYNE1-203ENST00000354674 GSE1Q14687 1217 aa13.23□□□□□ -0.29
SYNE1-203ENST00000354674 NAP1L5Q96NT1 182 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-203ENST00000354674 SHPRHQ149N8 1683 aa13.23□□□□□ -0.29
SYNE1-203ENST00000354674 MSH6P52701 1360 aa13.23□□□□□ -0.29
SYNE1-203ENST00000354674 MARF1Q9Y4F3 1742 aaKnown RBP13.23□□□□□ -0.29
SYNE1-203ENST00000354674 SMG6Q86US8 1419 aaKnown RBP13.23□□□□□ -0.29
SYNE1-203ENST00000354674 CADPS2Q86UW7 1296 aa13.22□□□□□ -0.29
SYNE1-203ENST00000354674 ATF3P18847 181 aa13.21□□□□□ -0.29
SYNE1-203ENST00000354674 ESCO1Q5FWF5 840 aa13.21□□□□□ -0.29
SYNE1-203ENST00000354674 PNPLA6Q8IY17 1366 aa13.21□□□□□ -0.29
SYNE1-203ENST00000354674 COL3A1P02461 1466 aaPredicted RBP13.21□□□□□ -0.29
SYNE1-203ENST00000354674 TRPM3Q9HCF6 1732 aaPredicted RBP13.21□□□□□ -0.3
SYNE1-203ENST00000354674 BLMP54132 1417 aaPredicted RBP13.21□□□□□ -0.3
SYNE1-203ENST00000354674 ORAI2Q96SN7 254 aa13.21□□□□□ -0.3
SYNE1-203ENST00000354674 ZRANB1Q9UGI0 708 aa13.21□□□□□ -0.3
SYNE1-203ENST00000354674 LTBP4Q8N2S1 1624 aa13.21□□□□□ -0.3
SYNE1-203ENST00000354674 MTHFSP49914 203 aa13.2□□□□□ -0.3
SYNE1-203ENST00000354674 COG3Q96JB2 828 aa13.2□□□□□ -0.3
SYNE1-203ENST00000354674 TNNT2P45379 298 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-203ENST00000354674 RBM10P98175 930 aaKnown RBP13.19□□□□□ -0.3
SYNE1-203ENST00000354674 MAP2P11137 1827 aaKnown RBP13.19□□□□□ -0.3
SYNE1-203ENST00000354674 HSP90AA2PQ14568 343 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-203ENST00000354674 POLKQ9UBT6 870 aa13.18□□□□□ -0.3
SYNE1-203ENST00000354674 DAXXQ9UER7 740 aaPredicted RBP13.18□□□□□ -0.3
SYNE1-203ENST00000354674 SKAP1Q86WV1 359 aa13.17□□□□□ -0.3
SYNE1-203ENST00000354674 ADAMTS8Q9UP79 889 aa13.17□□□□□ -0.3
SYNE1-203ENST00000354674 CDK12Q9NYV4 1490 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-203ENST00000354674 CFAP53Q96M91 514 aa13.16□□□□□ -0.3
SYNE1-203ENST00000354674 ALS2Q96Q42 1657 aa13.16□□□□□ -0.3
SYNE1-203ENST00000354674 PSME1Q06323 249 aa13.15□□□□□ -0.3
SYNE1-203ENST00000354674 ZBED9Q6R2W3 1325 aa13.15□□□□□ -0.3
SYNE1-203ENST00000354674 WDR43Q15061 677 aaKnown RBP eCLIP13.14□□□□□ -0.31
SYNE1-203ENST00000354674 FOXO3O43524 673 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms