RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SSH2Q76I76 1423 aa30.69■■■□□ 2.5
SHMT1-203ENST00000354098 LMOD2Q6P5Q4 547 aa30.68■■■□□ 2.5
SHMT1-203ENST00000354098 TNS3Q68CZ2 1445 aa30.68■■■□□ 2.5
SHMT1-203ENST00000354098 MON2Q7Z3U7 1717 aa30.66■■■□□ 2.5
SHMT1-203ENST00000354098 JCADQ9P266 1359 aa30.66■■■□□ 2.5
SHMT1-203ENST00000354098 TTC21BQ7Z4L5 1316 aa30.65■■■□□ 2.5
SHMT1-203ENST00000354098 PNPLA6Q8IY17 1366 aa30.65■■■□□ 2.5
SHMT1-203ENST00000354098 CARD14Q9BXL6 1004 aa30.65■■■□□ 2.5
SHMT1-203ENST00000354098 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.64■■■□□ 2.5
SHMT1-203ENST00000354098 NRKQ7Z2Y5 1582 aa30.63■■■□□ 2.49
SHMT1-203ENST00000354098 PANK3Q9H999 370 aa30.63■■■□□ 2.49
SHMT1-203ENST00000354098 ALS2Q96Q42 1657 aa30.63■■■□□ 2.49
SHMT1-203ENST00000354098 BRD4O60885 1362 aaPredicted RBP30.63■■■□□ 2.49
SHMT1-203ENST00000354098 NUTM2GQ5VZR2 741 aa30.62■■■□□ 2.49
SHMT1-203ENST00000354098 ABTB2Q8N961 1025 aa30.62■■■□□ 2.49
SHMT1-203ENST00000354098 EDC4Q6P2E9 1401 aaKnown RBP30.61■■■□□ 2.49
SHMT1-203ENST00000354098 PLEKHG5O94827 1062 aa30.61■■■□□ 2.49
SHMT1-203ENST00000354098 SHPRHQ149N8 1683 aa30.59■■■□□ 2.49
SHMT1-203ENST00000354098 ARHGEF10O15013 1369 aa30.59■■■□□ 2.49
SHMT1-203ENST00000354098 TTC21AQ8NDW8 1320 aa30.57■■■□□ 2.48
SHMT1-203ENST00000354098 CABLES1Q8TDN4 633 aa30.57■■■□□ 2.48
SHMT1-203ENST00000354098 NME9Q86XW9 330 aa30.56■■■□□ 2.48
SHMT1-203ENST00000354098 NSD3Q9BZ95 1437 aa30.56■■■□□ 2.48
SHMT1-203ENST00000354098 ZRANB1Q9UGI0 708 aa30.55■■■□□ 2.48
SHMT1-203ENST00000354098 COL22A1Q8NFW1 1626 aaPredicted RBP30.55■■■□□ 2.48
SHMT1-203ENST00000354098 PIK3C2AO00443 1686 aa30.55■■■□□ 2.48
SHMT1-203ENST00000354098 ZNF316A6NFI3 1004 aaPredicted RBP30.53■■■□□ 2.48
SHMT1-203ENST00000354098 NUTM2BA6NNL0 878 aaPredicted RBP30.53■■■□□ 2.48
SHMT1-203ENST00000354098 NUTM2EB1AL46 878 aaPredicted RBP30.53■■■□□ 2.48
SHMT1-203ENST00000354098 NLRP6P59044 892 aa30.53■■■□□ 2.48
SHMT1-203ENST00000354098 NUTM2AQ8IVF1 878 aaPredicted RBP30.53■■■□□ 2.48
SHMT1-203ENST00000354098 SPATA31A6Q5VVP1 1343 aa30.51■■■□□ 2.48
SHMT1-203ENST00000354098 NLRP13Q86W25 1043 aa30.5■■■□□ 2.47
SHMT1-203ENST00000354098 MED1Q15648 1581 aaPredicted RBP30.5■■■□□ 2.47
SHMT1-203ENST00000354098 FYB1O15117 783 aa30.49■■■□□ 2.47
SHMT1-203ENST00000354098 LRP6O75581 1613 aa30.47■■■□□ 2.47
SHMT1-203ENST00000354098 PER1O15534 1290 aaPredicted RBP30.46■■■□□ 2.47
SHMT1-203ENST00000354098 GGNBP2Q9H3C7 697 aa30.46■■■□□ 2.47
SHMT1-203ENST00000354098 USP31Q70CQ4 1352 aa30.46■■■□□ 2.47
SHMT1-203ENST00000354098 USP19O94966 1318 aa30.46■■■□□ 2.47
SHMT1-203ENST00000354098 CRYBG1Q9Y4K1 1723 aa30.45■■■□□ 2.46
SHMT1-203ENST00000354098 HAP1P54257 671 aaPredicted RBP30.44■■■□□ 2.46
SHMT1-203ENST00000354098 DDX10Q13206 875 aaKnown RBP30.44■■■□□ 2.46
SHMT1-203ENST00000354098 KNSTRNQ9Y448 316 aa30.44■■■□□ 2.46
SHMT1-203ENST00000354098 MARF1Q9Y4F3 1742 aaKnown RBP30.44■■■□□ 2.46
SHMT1-203ENST00000354098 CGNL1Q0VF96 1302 aa30.43■■■□□ 2.46
SHMT1-203ENST00000354098 ADAMTS2O95450 1211 aa30.43■■■□□ 2.46
SHMT1-203ENST00000354098 ABCA3Q99758 1704 aa30.43■■■□□ 2.46
SHMT1-203ENST00000354098 OVOS2A0A0J9YW53 1432 aa30.41■■■□□ 2.46
SHMT1-203ENST00000354098 GCP02774 474 aa30.41■■■□□ 2.46
SHMT1-203ENST00000354098 OVOS2Q6IE36 1432 aa30.41■■■□□ 2.46
SHMT1-203ENST00000354098 PHRF1Q9P1Y6 1649 aaKnown RBP30.41■■■□□ 2.46
SHMT1-203ENST00000354098 KIF20BQ96Q89 1820 aa30.4■■■□□ 2.46
SHMT1-203ENST00000354098 SOX12O15370 315 aa30.39■■■□□ 2.46
SHMT1-203ENST00000354098 COG3Q96JB2 828 aa30.39■■■□□ 2.46
SHMT1-203ENST00000354098 SLIT3O75094 1523 aa30.39■■■□□ 2.46
SHMT1-203ENST00000354098 USP54Q70EL1 1684 aa30.38■■■□□ 2.45
SHMT1-203ENST00000354098 AMER1Q5JTC6 1135 aaPredicted RBP30.37■■■□□ 2.45
SHMT1-203ENST00000354098 ZC3H6P61129 1189 aaKnown RBP30.36■■■□□ 2.45
SHMT1-203ENST00000354098 MEX3CQ5U5Q3 659 aaKnown RBP30.35■■■□□ 2.45
SHMT1-203ENST00000354098 FBLN1P23142 703 aa30.33■■■□□ 2.45
SHMT1-203ENST00000354098 CNGB1Q14028 1251 aaPredicted RBP30.33■■■□□ 2.45
SHMT1-203ENST00000354098 KCNH5Q8NCM2 988 aa30.33■■■□□ 2.45
SHMT1-203ENST00000354098 C8orf37Q96NL8 207 aa30.32■■■□□ 2.44
SHMT1-203ENST00000354098 KIAA0232Q92628 1395 aa30.32■■■□□ 2.44
SHMT1-203ENST00000354098 CC2D1BQ5T0F9 858 aaKnown RBP30.31■■■□□ 2.44
SHMT1-203ENST00000354098 NFAT5O94916 1531 aa30.31■■■□□ 2.44
SHMT1-203ENST00000354098 FAM83GA6ND36 823 aa30.3■■■□□ 2.44
SHMT1-203ENST00000354098 NSD2O96028 1365 aa30.29■■■□□ 2.44
SHMT1-203ENST00000354098 ZBTB7CA1YPR0 619 aa30.28■■■□□ 2.44
SHMT1-203ENST00000354098 CHRNA2Q15822 529 aa30.28■■■□□ 2.44
SHMT1-203ENST00000354098 PRDM11Q9NQV5 511 aa30.28■■■□□ 2.44
SHMT1-203ENST00000354098 NGLY1Q96IV0 654 aa30.27■■■□□ 2.44
SHMT1-203ENST00000354098 CPDO75976 1380 aa30.27■■■□□ 2.44
SHMT1-203ENST00000354098 ANKRD26Q9UPS8 1709 aa30.26■■■□□ 2.43
SHMT1-203ENST00000354098 TNNT2P45379 298 aaPredicted RBP30.26■■■□□ 2.43
SHMT1-203ENST00000354098 ARHGEF25Q86VW2 580 aa30.26■■■□□ 2.43
SHMT1-203ENST00000354098 MORC1Q86VD1 984 aa30.25■■■□□ 2.43
SHMT1-203ENST00000354098 NPC1L1Q9UHC9 1359 aa30.24■■■□□ 2.43
SHMT1-203ENST00000354098 RRS1Q15050 365 aaKnown RBP30.23■■■□□ 2.43
SHMT1-203ENST00000354098 AFF2P51816 1311 aa30.21■■■□□ 2.43
SHMT1-203ENST00000354098 FNBP4Q8N3X1 1017 aaPredicted RBP30.2■■■□□ 2.43
SHMT1-203ENST00000354098 MAP3K19Q56UN5 1328 aa30.2■■■□□ 2.43
SHMT1-203ENST00000354098 BTG4Q9NY30 223 aa30.19■■■□□ 2.42
SHMT1-203ENST00000354098 COL14A1Q05707 1796 aaKnown RBP30.19■■■□□ 2.42
SHMT1-203ENST00000354098 SLIT2O94813 1529 aa30.18■■■□□ 2.42
SHMT1-203ENST00000354098 AXIN2Q9Y2T1 843 aa30.18■■■□□ 2.42
SHMT1-203ENST00000354098 AATKQ6ZMQ8 1374 aa30.17■■■□□ 2.42
SHMT1-203ENST00000354098 LTN1O94822 1766 aa30.17■■■□□ 2.42
SHMT1-203ENST00000354098 PLCH1Q4KWH8 1693 aa30.16■■■□□ 2.42
SHMT1-203ENST00000354098 RGS17Q9UGC6 210 aaPredicted RBP30.16■■■□□ 2.42
SHMT1-203ENST00000354098 EMILIN1Q9Y6C2 1016 aa30.16■■■□□ 2.42
SHMT1-203ENST00000354098 BCL9LQ86UU0 1499 aa30.16■■■□□ 2.42
SHMT1-203ENST00000354098 USP21Q9UK80 565 aa30.15■■■□□ 2.42
SHMT1-203ENST00000354098 COL18A1P39060 1754 aa30.15■■■□□ 2.42
SHMT1-203ENST00000354098 LMO7Q8WWI1 1683 aa30.15■■■□□ 2.42
SHMT1-203ENST00000354098 CAMTA1Q9Y6Y1 1673 aa30.15■■■□□ 2.42
SHMT1-203ENST00000354098 PHF23Q9BUL5 403 aaPredicted RBP30.14■■■□□ 2.42
SHMT1-203ENST00000354098 POLKQ9UBT6 870 aa30.14■■■□□ 2.42
SHMT1-203ENST00000354098 AMPHP49418 695 aa30.12■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms