RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 ATAD2Q6PL18 1390 aa31.22■■■□□ 2.59
CPNE1-202ENST00000352393 EXOSC9Q06265 439 aaKnown RBP31.21■■■□□ 2.59
CPNE1-202ENST00000352393 IL16Q14005 1332 aa31.21■■■□□ 2.59
CPNE1-202ENST00000352393 SAFB2Q14151 953 aaKnown RBP eCLIP31.21■■■□□ 2.593e-13■□□□□ 9.1
CPNE1-202ENST00000352393 SMC4Q9NTJ3 1288 aa31.21■■■□□ 2.59
CPNE1-202ENST00000352393 KIF20BQ96Q89 1820 aa31.2■■■□□ 2.59
CPNE1-202ENST00000352393 IDI1Q13907 227 aa31.2■■■□□ 2.59
CPNE1-202ENST00000352393 TRIM27P14373 513 aa31.19■■■□□ 2.58
CPNE1-202ENST00000352393 GGNBP2Q9H3C7 697 aa31.19■■■□□ 2.58
CPNE1-202ENST00000352393 U2SURPO15042 1029 aaKnown RBP31.18■■■□□ 2.58
CPNE1-202ENST00000352393 SRPK2P78362 688 aaKnown RBP31.18■■■□□ 2.58
CPNE1-202ENST00000352393 HDAC1Q13547 482 aaPredicted RBP31.18■■■□□ 2.58
CPNE1-202ENST00000352393 CDC42BPGQ6DT37 1551 aa31.18■■■□□ 2.58
CPNE1-202ENST00000352393 SSH1Q8WYL5 1049 aa31.17■■■□□ 2.58
CPNE1-202ENST00000352393 SLKQ9H2G2 1235 aaPredicted RBP31.17■■■□□ 2.58
CPNE1-202ENST00000352393 RAPGEF3O95398 923 aa31.16■■■□□ 2.58
CPNE1-202ENST00000352393 TBC1D2Q9BYX2 928 aa31.16■■■□□ 2.58
CPNE1-202ENST00000352393 SLC52A1Q9NWF4 448 aa31.16■■■□□ 2.58
CPNE1-202ENST00000352393 DDX19BQ9UMR2 479 aa31.15■■■□□ 2.58
CPNE1-202ENST00000352393 FYB1O15117 783 aa31.15■■■□□ 2.58
CPNE1-202ENST00000352393 ATF7IPQ6VMQ6 1270 aa31.14■■■□□ 2.58
CPNE1-202ENST00000352393 TERF2IPQ9NYB0 399 aa31.14■■■□□ 2.58
CPNE1-202ENST00000352393 STK26Q9P289 416 aa31.14■■■□□ 2.58
CPNE1-202ENST00000352393 YTHDC2Q9H6S0 1430 aaKnown RBP31.14■■■□□ 2.58
CPNE1-202ENST00000352393 PNPLA6Q8IY17 1366 aa31.13■■■□□ 2.57
CPNE1-202ENST00000352393 LRRC7Q96NW7 1537 aa31.1■■■□□ 2.57
CPNE1-202ENST00000352393 ITPRIPQ8IWB1 547 aa31.1■■■□□ 2.57
CPNE1-202ENST00000352393 POGKQ9P215 609 aa31.1■■■□□ 2.57
CPNE1-202ENST00000352393 MINK1Q8N4C8 1332 aaPredicted RBP31.09■■■□□ 2.57
CPNE1-202ENST00000352393 SMC5Q8IY18 1101 aa31.09■■■□□ 2.57
CPNE1-202ENST00000352393 PRAM1Q96QH2 718 aa31.08■■■□□ 2.57
CPNE1-202ENST00000352393 ARHGEF40Q8TER5 1519 aa31.08■■■□□ 2.57
CPNE1-202ENST00000352393 NOB1Q9ULX3 412 aaKnown RBP31.07■■■□□ 2.56
CPNE1-202ENST00000352393 ALKQ9UM73 1620 aa31.07■■■□□ 2.56
CPNE1-202ENST00000352393 KIF16BQ96L93 1317 aa31.07■■■□□ 2.56
CPNE1-202ENST00000352393 RIPK4P57078 832 aa31.06■■■□□ 2.56
CPNE1-202ENST00000352393 YEATS2Q9ULM3 1422 aa31.06■■■□□ 2.56
CPNE1-202ENST00000352393 DIAPH1O60610 1272 aaKnown RBP31.06■■■□□ 2.56
CPNE1-202ENST00000352393 TMEM57Q8N5G2 664 aa31.05■■■□□ 2.56
CPNE1-202ENST00000352393 ZBTB40Q9NUA8 1239 aa31.04■■■□□ 2.56
CPNE1-202ENST00000352393 C22orf23Q9BZE7 217 aa31.03■■■□□ 2.56
CPNE1-202ENST00000352393 PNNQ9H307 717 aaKnown RBP31.03■■■□□ 2.56
CPNE1-202ENST00000352393 FAM135BQ49AJ0 1406 aa31.02■■■□□ 2.56
CPNE1-202ENST00000352393 HDGFL2Q7Z4V5 671 aaPredicted RBP31.01■■■□□ 2.56
CPNE1-202ENST00000352393 ALDH1L2Q3SY69 923 aa31.01■■■□□ 2.55
CPNE1-202ENST00000352393 PPIP5K1Q6PFW1 1433 aa31.01■■■□□ 2.55
CPNE1-202ENST00000352393 IPO8O15397 1037 aaKnown RBP31■■■□□ 2.55
CPNE1-202ENST00000352393 MFAP1P55081 439 aaKnown RBP30.99■■■□□ 2.55
CPNE1-202ENST00000352393 SENP3Q9H4L4 574 aaPredicted RBP30.98■■■□□ 2.55
CPNE1-202ENST00000352393 ANO8Q9HCE9 1232 aaPredicted RBP30.98■■■□□ 2.55
CPNE1-202ENST00000352393 FCHSD2O94868 740 aa30.97■■■□□ 2.55
CPNE1-202ENST00000352393 DLC1Q96QB1 1528 aa30.97■■■□□ 2.55
CPNE1-202ENST00000352393 CDK19Q9BWU1 502 aa30.97■■■□□ 2.55
CPNE1-202ENST00000352393 ATP7BP35670 1465 aa30.96■■■□□ 2.55
CPNE1-202ENST00000352393 BRPF1P55201 1214 aaPredicted RBP30.95■■■□□ 2.54
CPNE1-202ENST00000352393 NUCB1Q02818 461 aa30.94■■■□□ 2.54
CPNE1-202ENST00000352393 RSPH6AQ9H0K4 717 aa30.94■■■□□ 2.54
CPNE1-202ENST00000352393 SETD1AO15047 1707 aaKnown RBP30.93■■■□□ 2.54
CPNE1-202ENST00000352393 CABP1Q9NZU7 370 aa30.93■■■□□ 2.54
CPNE1-202ENST00000352393 ZNF428Q96B54 188 aa30.92■■■□□ 2.54
CPNE1-202ENST00000352393 MAP2P11137 1827 aaKnown RBP30.92■■■□□ 2.54
CPNE1-202ENST00000352393 RIMBP3CA6NJZ7 1639 aa30.91■■■□□ 2.54
CPNE1-202ENST00000352393 RIMBP3BA6NNM3 1639 aa30.91■■■□□ 2.54
CPNE1-202ENST00000352393 RIMBP3Q9UFD9 1639 aa30.91■■■□□ 2.54
CPNE1-202ENST00000352393 PRKAR2BP31323 418 aa30.9■■■□□ 2.54
CPNE1-202ENST00000352393 PTCH1Q13635 1447 aa30.9■■■□□ 2.54
CPNE1-202ENST00000352393 NCOA3Q9Y6Q9 1424 aa30.9■■■□□ 2.54
CPNE1-202ENST00000352393 PIK3R4Q99570 1358 aa30.89■■■□□ 2.54
CPNE1-202ENST00000352393 CHMP5Q9NZZ3 219 aa30.89■■■□□ 2.54
CPNE1-202ENST00000352393 MCM4P33991 863 aa30.89■■■□□ 2.54
CPNE1-202ENST00000352393 FAM43AQ8N2R8 423 aa30.89■■■□□ 2.54
CPNE1-202ENST00000352393 L1TD1Q5T7N2 865 aaKnown RBP30.88■■■□□ 2.53
CPNE1-202ENST00000352393 POLKQ9UBT6 870 aa30.88■■■□□ 2.53
CPNE1-202ENST00000352393 SPRYD3Q8NCJ5 442 aa30.87■■■□□ 2.53
CPNE1-202ENST00000352393 RBM25P49756 843 aaKnown RBP30.86■■■□□ 2.53
CPNE1-202ENST00000352393 FBXO31Q5XUX0 539 aaPredicted RBP30.85■■■□□ 2.53
CPNE1-202ENST00000352393 CHD1LQ86WJ1 897 aa30.85■■■□□ 2.53
CPNE1-202ENST00000352393 NFE2L2Q16236 605 aa30.85■■■□□ 2.53
CPNE1-202ENST00000352393 CYB5RLQ6IPT4 315 aa30.84■■■□□ 2.53
CPNE1-202ENST00000352393 HSCBQ8IWL3 235 aa30.83■■■□□ 2.53
CPNE1-202ENST00000352393 LNPKQ9C0E8 428 aa30.83■■■□□ 2.53
CPNE1-202ENST00000352393 CDK12Q9NYV4 1490 aaPredicted RBP30.83■■■□□ 2.53
CPNE1-202ENST00000352393 ZNF692Q9BU19 519 aaPredicted RBP30.83■■■□□ 2.53
CPNE1-202ENST00000352393 ARHGAP45Q92619 1136 aa30.82■■■□□ 2.52
CPNE1-202ENST00000352393 DLG5Q8TDM6 1919 aa30.81■■■□□ 2.52
CPNE1-202ENST00000352393 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.81■■■□□ 2.52
CPNE1-202ENST00000352393 MRPL50Q8N5N7 158 aaKnown RBP30.81■■■□□ 2.52
CPNE1-202ENST00000352393 VAMP4O75379 141 aa30.8■■■□□ 2.52
CPNE1-202ENST00000352393 BMP2KLQ5H9B9 411 aa30.8■■■□□ 2.52
CPNE1-202ENST00000352393 PHACTR3Q96KR7 559 aa30.8■■■□□ 2.52
CPNE1-202ENST00000352393 ZBTB7BO15156 539 aaPredicted RBP30.8■■■□□ 2.52
CPNE1-202ENST00000352393 CALD1Q05682 793 aaKnown RBP30.8■■■□□ 2.52
CPNE1-202ENST00000352393 SNX21Q969T3 373 aa30.79■■■□□ 2.52
CPNE1-202ENST00000352393 A2ML1A8K2U0 1454 aa30.79■■■□□ 2.52
CPNE1-202ENST00000352393 CPSF1Q10570 1443 aaKnown RBP30.79■■■□□ 2.52
CPNE1-202ENST00000352393 FBLN1P23142 703 aa30.79■■■□□ 2.52
CPNE1-202ENST00000352393 DDIT3P35638 169 aa30.79■■■□□ 2.52
CPNE1-202ENST00000352393 REREQ9P2R6 1566 aa30.78■■■□□ 2.52
CPNE1-202ENST00000352393 EDC4Q6P2E9 1401 aaKnown RBP30.78■■■□□ 2.52
CPNE1-202ENST00000352393 FSD2A1L4K1 749 aa30.78■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms