RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 PPP4R2Q9NY27 417 aa9.17□□□□□ -0.94
TRIM55-203ENST00000350034 PPIP5K1Q6PFW1 1433 aa9.16□□□□□ -0.94
TRIM55-203ENST00000350034 IRX6P78412 446 aaPredicted RBP9.16□□□□□ -0.94
TRIM55-203ENST00000350034 SLC26A8Q96RN1 970 aa9.16□□□□□ -0.94
TRIM55-203ENST00000350034 RCAN3Q9UKA8 241 aa9.16□□□□□ -0.94
TRIM55-203ENST00000350034 SALL2Q9Y467 1007 aaPredicted RBP9.16□□□□□ -0.94
TRIM55-203ENST00000350034 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.16□□□□□ -0.94
TRIM55-203ENST00000350034 ANKRD26Q9UPS8 1709 aa9.16□□□□□ -0.94
TRIM55-203ENST00000350034 PLEKHG3A1L390 1219 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 APAF1O14727 1248 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 TNNT2P45379 298 aaPredicted RBP9.15□□□□□ -0.94
TRIM55-203ENST00000350034 GOLGA2Q08379 1002 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 SLFN5Q08AF3 891 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 DUSP27Q5VZP5 1158 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 CCDC146Q8IYE0 955 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 PELP1Q8IZL8 1130 aaKnown RBP9.15□□□□□ -0.94
TRIM55-203ENST00000350034 RUNDC1Q96C34 613 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 AMOTL2Q9Y2J4 779 aa9.15□□□□□ -0.94
TRIM55-203ENST00000350034 XRN1Q8IZH2 1706 aaKnown RBP9.14□□□□□ -0.95
TRIM55-203ENST00000350034 RRP1P56182 461 aaKnown RBP9.14□□□□□ -0.95
TRIM55-203ENST00000350034 ZNF692Q9BU19 519 aaPredicted RBP9.14□□□□□ -0.95
TRIM55-203ENST00000350034 ZNF142P52746 1687 aaPredicted RBP9.13□□□□□ -0.95
TRIM55-203ENST00000350034 AATKQ6ZMQ8 1374 aa9.13□□□□□ -0.95
TRIM55-203ENST00000350034 CCDC27Q2M243 656 aa9.13□□□□□ -0.95
TRIM55-203ENST00000350034 NCKAP5LQ9HCH0 1330 aa9.12□□□□□ -0.95
TRIM55-203ENST00000350034 MON2Q7Z3U7 1717 aa9.12□□□□□ -0.95
TRIM55-203ENST00000350034 POLKQ9UBT6 870 aa9.12□□□□□ -0.95
TRIM55-203ENST00000350034 TOPAZ1Q8N9V7 1692 aa9.12□□□□□ -0.95
TRIM55-203ENST00000350034 SSH2Q76I76 1423 aa9.12□□□□□ -0.95
TRIM55-203ENST00000350034 KIF20BQ96Q89 1820 aa9.12□□□□□ -0.95
TRIM55-203ENST00000350034 E9PSI1 815 aa9.11□□□□□ -0.95
TRIM55-203ENST00000350034 ANKLE2Q86XL3 938 aa9.11□□□□□ -0.95
TRIM55-203ENST00000350034 NME9Q86XW9 330 aa9.11□□□□□ -0.95
TRIM55-203ENST00000350034 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.11□□□□□ -0.95
TRIM55-203ENST00000350034 WWC1Q8IX03 1113 aa9.11□□□□□ -0.95
TRIM55-203ENST00000350034 TCP11L2Q8N4U5 519 aa9.11□□□□□ -0.95
TRIM55-203ENST00000350034 PLEKHF1Q96S99 279 aa9.11□□□□□ -0.95
TRIM55-203ENST00000350034 SPINK5Q9NQ38 1064 aaPredicted RBP9.11□□□□□ -0.95
TRIM55-203ENST00000350034 ANKARQ7Z5J8 1434 aa9.11□□□□□ -0.95
TRIM55-203ENST00000350034 NKTRP30414 1462 aaKnown RBP9.1□□□□□ -0.95
TRIM55-203ENST00000350034 AKAP12Q02952 1782 aa9.1□□□□□ -0.95
TRIM55-203ENST00000350034 KCNA6P17658 529 aa9.1□□□□□ -0.95
TRIM55-203ENST00000350034 WDR63Q8IWG1 891 aa9.1□□□□□ -0.95
TRIM55-203ENST00000350034 UPF1Q92900 1129 aaKnown RBP eCLIP9.1□□□□□ -0.95
TRIM55-203ENST00000350034 USP6P35125 1406 aa9.1□□□□□ -0.95
TRIM55-203ENST00000350034 ACEP12821 1306 aa9.09□□□□□ -0.95
TRIM55-203ENST00000350034 TTC21BQ7Z4L5 1316 aa9.09□□□□□ -0.95
TRIM55-203ENST00000350034 NRKQ7Z2Y5 1582 aa9.09□□□□□ -0.95
TRIM55-203ENST00000350034 DIAPH1O60610 1272 aaKnown RBP9.09□□□□□ -0.95
TRIM55-203ENST00000350034 U2AF1L5P0DN76 240 aaPredicted RBP9.09□□□□□ -0.95
TRIM55-203ENST00000350034 U2AF1Q01081 240 aaKnown RBP eCLIP9.09□□□□□ -0.95
TRIM55-203ENST00000350034 CDK12Q9NYV4 1490 aaPredicted RBP9.08□□□□□ -0.96
TRIM55-203ENST00000350034 OVOS2A0A0J9YW53 1432 aa9.08□□□□□ -0.96
TRIM55-203ENST00000350034 OVOS2Q6IE36 1432 aa9.08□□□□□ -0.96
TRIM55-203ENST00000350034 TSHZ2Q9NRE2 1034 aa9.08□□□□□ -0.96
TRIM55-203ENST00000350034 ZRANB1Q9UGI0 708 aa9.08□□□□□ -0.96
TRIM55-203ENST00000350034 USP31Q70CQ4 1352 aa9.08□□□□□ -0.96
TRIM55-203ENST00000350034 SETD1BQ9UPS6 1966 aaKnown RBP9.08□□□□□ -0.96
TRIM55-203ENST00000350034 FCHSD2O94868 740 aa9.07□□□□□ -0.96
TRIM55-203ENST00000350034 IL13P35225 146 aa9.07□□□□□ -0.96
TRIM55-203ENST00000350034 B4GALNT3Q6L9W6 998 aa9.07□□□□□ -0.96
TRIM55-203ENST00000350034 COG3Q96JB2 828 aa9.07□□□□□ -0.96
TRIM55-203ENST00000350034 TTC21AQ8NDW8 1320 aa9.06□□□□□ -0.96
TRIM55-203ENST00000350034 NPHP4O75161 1426 aaPredicted RBP9.06□□□□□ -0.96
TRIM55-203ENST00000350034 ITSN1Q15811 1721 aa9.06□□□□□ -0.96
TRIM55-203ENST00000350034 FBLN1P23142 703 aa9.06□□□□□ -0.96
TRIM55-203ENST00000350034 TMPOP42166 694 aaKnown RBP9.06□□□□□ -0.96
TRIM55-203ENST00000350034 PNNQ9H307 717 aaKnown RBP9.06□□□□□ -0.96
TRIM55-203ENST00000350034 U2SURPO15042 1029 aaKnown RBP9.05□□□□□ -0.96
TRIM55-203ENST00000350034 SLC34A2O95436 690 aa9.05□□□□□ -0.96
TRIM55-203ENST00000350034 POTEAQ6S8J7 498 aa9.05□□□□□ -0.96
TRIM55-203ENST00000350034 EXOC6Q8TAG9 804 aa9.05□□□□□ -0.96
TRIM55-203ENST00000350034 RSPH6AQ9H0K4 717 aa9.05□□□□□ -0.96
TRIM55-203ENST00000350034 RRP7AQ9Y3A4 280 aaKnown RBP9.05□□□□□ -0.96
TRIM55-203ENST00000350034 EMILIN1Q9Y6C2 1016 aa9.05□□□□□ -0.96
TRIM55-203ENST00000350034 CHD2O14647 1828 aaKnown RBP9.05□□□□□ -0.96
TRIM55-203ENST00000350034 IL16Q14005 1332 aa9.05□□□□□ -0.96
TRIM55-203ENST00000350034 TRIM35Q9UPQ4 493 aa9.04□□□□□ -0.96
TRIM55-203ENST00000350034 FMN2Q9NZ56 1722 aa9.04□□□□□ -0.96
TRIM55-203ENST00000350034 NUTM2FA1L443 756 aa9.03□□□□□ -0.96
TRIM55-203ENST00000350034 PLIN1O60240 522 aa9.03□□□□□ -0.96
TRIM55-203ENST00000350034 LRRC7Q96NW7 1537 aa9.03□□□□□ -0.96
TRIM55-203ENST00000350034 ADGRL3Q9HAR2 1447 aa9.03□□□□□ -0.96
TRIM55-203ENST00000350034 NWD1Q149M9 1564 aa9.03□□□□□ -0.96
TRIM55-203ENST00000350034 NALCNQ8IZF0 1738 aa9.02□□□□□ -0.96
TRIM55-203ENST00000350034 RRS1Q15050 365 aaKnown RBP9.02□□□□□ -0.97
TRIM55-203ENST00000350034 NEUROD2Q15784 382 aa9.02□□□□□ -0.97
TRIM55-203ENST00000350034 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.02□□□□□ -0.97
TRIM55-203ENST00000350034 PMFBP1Q8TBY8 1022 aa9.02□□□□□ -0.97
TRIM55-203ENST00000350034 CCDC136Q96JN2 1154 aa9.02□□□□□ -0.97
TRIM55-203ENST00000350034 CRBNQ96SW2 442 aa9.02□□□□□ -0.97
TRIM55-203ENST00000350034 MYH16Q9H6N6 1097 aa9.02□□□□□ -0.97
TRIM55-203ENST00000350034 MAPK8IP3Q9UPT6 1336 aa9.02□□□□□ -0.97
TRIM55-203ENST00000350034 CT47B1P0C2W7 299 aaPredicted RBP9.01□□□□□ -0.97
TRIM55-203ENST00000350034 PRKAR2BP31323 418 aa9.01□□□□□ -0.97
TRIM55-203ENST00000350034 PIP4K2BP78356 416 aa9.01□□□□□ -0.97
TRIM55-203ENST00000350034 C20orf194Q5TEA3 1177 aa9.01□□□□□ -0.97
TRIM55-203ENST00000350034 NGDNQ8NEJ9 315 aaKnown RBP9.01□□□□□ -0.97
TRIM55-203ENST00000350034 MAP2P11137 1827 aaKnown RBP9.01□□□□□ -0.97
TRIM55-203ENST00000350034 USP54Q70EL1 1684 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms