RNA–Protein interactions for RNA: ENST00000348987.4

SCARF1-202, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARF1, Length 2,619 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-202ENST00000348987 DDX11L8A8MPP1 907 aa23.5■■□□□ 1.35
SCARF1-202ENST00000348987 ZC3H13Q5T200 1668 aaKnown RBP23.49■■□□□ 1.35
SCARF1-202ENST00000348987 RPGRIP1LQ68CZ1 1315 aa23.49■■□□□ 1.35
SCARF1-202ENST00000348987 GAS2L3Q86XJ1 694 aa23.49■■□□□ 1.35
SCARF1-202ENST00000348987 IQSEC2Q5JU85 1478 aa23.48■■□□□ 1.35
SCARF1-202ENST00000348987 EVC2Q86UK5 1308 aa23.47■■□□□ 1.35
SCARF1-202ENST00000348987 TULP4Q9NRJ4 1543 aa23.47■■□□□ 1.35
SCARF1-202ENST00000348987 ZMYM3Q14202 1370 aa23.47■■□□□ 1.35
SCARF1-202ENST00000348987 U2AF1L5P0DN76 240 aaPredicted RBP23.47■■□□□ 1.35
SCARF1-202ENST00000348987 U2AF1Q01081 240 aaKnown RBP eCLIP23.47■■□□□ 1.35
SCARF1-202ENST00000348987 TPM2P07951 284 aa23.46■■□□□ 1.35
SCARF1-202ENST00000348987 ZNF692Q9BU19 519 aaPredicted RBP23.46■■□□□ 1.35
SCARF1-202ENST00000348987 ISY1Q9ULR0 285 aaKnown RBP23.46■■□□□ 1.35
SCARF1-202ENST00000348987 CAMSAP1Q5T5Y3 1602 aa23.46■■□□□ 1.35
SCARF1-202ENST00000348987 VGFO15240 615 aaPredicted RBP23.46■■□□□ 1.35
SCARF1-202ENST00000348987 PDCL3Q9H2J4 239 aa23.46■■□□□ 1.35
SCARF1-202ENST00000348987 RWDD1Q9H446 243 aaPredicted RBP23.46■■□□□ 1.35
SCARF1-202ENST00000348987 GLI2P10070 1586 aa23.45■■□□□ 1.35
SCARF1-202ENST00000348987 RICTORQ6R327 1708 aa23.45■■□□□ 1.35
SCARF1-202ENST00000348987 MLECQ14165 292 aa23.45■■□□□ 1.34
SCARF1-202ENST00000348987 CFAP53Q96M91 514 aa23.44■■□□□ 1.34
SCARF1-202ENST00000348987 HSCBQ8IWL3 235 aa23.44■■□□□ 1.34
SCARF1-202ENST00000348987 ANKRD36BQ8N2N9 1353 aa23.43■■□□□ 1.34
SCARF1-202ENST00000348987 KIAA1211Q6ZU35 1233 aa23.43■■□□□ 1.34
SCARF1-202ENST00000348987 WDR63Q8IWG1 891 aa23.43■■□□□ 1.34
SCARF1-202ENST00000348987 GGNBP2Q9H3C7 697 aa23.43■■□□□ 1.34
SCARF1-202ENST00000348987 TSPOAP1O95153 1857 aa23.42■■□□□ 1.34
SCARF1-202ENST00000348987 AAMPQ13685 434 aa23.41■■□□□ 1.34
SCARF1-202ENST00000348987 NEXMIFQ5QGS0 1516 aa23.41■■□□□ 1.34
SCARF1-202ENST00000348987 RIMBP3CA6NJZ7 1639 aa23.4■■□□□ 1.34
SCARF1-202ENST00000348987 RIMBP3BA6NNM3 1639 aa23.4■■□□□ 1.34
SCARF1-202ENST00000348987 RIMBP3Q9UFD9 1639 aa23.4■■□□□ 1.34
SCARF1-202ENST00000348987 SRPK2P78362 688 aaKnown RBP23.4■■□□□ 1.34
SCARF1-202ENST00000348987 TNPO1Q92973 898 aaKnown RBP23.4■■□□□ 1.34
SCARF1-202ENST00000348987 TSR2Q969E8 191 aaKnown RBP23.4■■□□□ 1.34
SCARF1-202ENST00000348987 A0A1W2PP64 1363 aa23.39■■□□□ 1.34
SCARF1-202ENST00000348987 ARHGEF28Q8N1W1 1705 aaKnown RBP23.38■■□□□ 1.33
SCARF1-202ENST00000348987 CCDC27Q2M243 656 aa23.38■■□□□ 1.33
SCARF1-202ENST00000348987 MINK1Q8N4C8 1332 aaPredicted RBP23.37■■□□□ 1.33
SCARF1-202ENST00000348987 U2SURPO15042 1029 aaKnown RBP23.37■■□□□ 1.33
SCARF1-202ENST00000348987 DDIT3P35638 169 aa23.37■■□□□ 1.33
SCARF1-202ENST00000348987 USP32Q8NFA0 1604 aa23.36■■□□□ 1.33
SCARF1-202ENST00000348987 PIK3C2BO00750 1634 aa23.35■■□□□ 1.33
SCARF1-202ENST00000348987 PUS7Q96PZ0 661 aaKnown RBP23.34■■□□□ 1.33
SCARF1-202ENST00000348987 PRAM1Q96QH2 718 aa23.34■■□□□ 1.33
SCARF1-202ENST00000348987 NCOA3Q9Y6Q9 1424 aa23.32■■□□□ 1.32
SCARF1-202ENST00000348987 RBM10P98175 930 aaKnown RBP23.32■■□□□ 1.32
SCARF1-202ENST00000348987 STAG3Q9UJ98 1225 aa23.32■■□□□ 1.32
SCARF1-202ENST00000348987 FYB1O15117 783 aa23.32■■□□□ 1.32
SCARF1-202ENST00000348987 GBP4Q96PP9 640 aa23.32■■□□□ 1.32
SCARF1-202ENST00000348987 PLEKHF1Q96S99 279 aa23.32■■□□□ 1.32
SCARF1-202ENST00000348987 NSD2O96028 1365 aa23.32■■□□□ 1.32
SCARF1-202ENST00000348987 ABCC11Q96J66 1382 aa23.32■■□□□ 1.32
SCARF1-202ENST00000348987 MVPQ14764 893 aaKnown RBP23.3■■□□□ 1.32
SCARF1-202ENST00000348987 SLC52A1Q9NWF4 448 aa23.3■■□□□ 1.32
SCARF1-202ENST00000348987 MYO5BQ9ULV0 1848 aa23.3■■□□□ 1.32
SCARF1-202ENST00000348987 CCDC173Q0VFZ6 552 aa23.3■■□□□ 1.32
SCARF1-202ENST00000348987 SKOR2Q2VWA4 1001 aaPredicted RBP23.3■■□□□ 1.32
SCARF1-202ENST00000348987 TRIM35Q9UPQ4 493 aa23.3■■□□□ 1.32
SCARF1-202ENST00000348987 EXOSC9Q06265 439 aaKnown RBP23.29■■□□□ 1.32
SCARF1-202ENST00000348987 ZSCAN30Q86W11 494 aa23.29■■□□□ 1.32
SCARF1-202ENST00000348987 FBLN1P23142 703 aa23.29■■□□□ 1.32
SCARF1-202ENST00000348987 TMPOP42166 694 aaKnown RBP23.29■■□□□ 1.32
SCARF1-202ENST00000348987 RAB3GAP1Q15042 981 aa23.29■■□□□ 1.32
SCARF1-202ENST00000348987 FOXD4L1Q9NU39 408 aa23.29■■□□□ 1.32
SCARF1-202ENST00000348987 DIP2BQ9P265 1576 aa23.29■■□□□ 1.32
SCARF1-202ENST00000348987 OFD1O75665 1012 aa23.28■■□□□ 1.32
SCARF1-202ENST00000348987 HSP90AB1P08238 724 aaKnown RBP23.28■■□□□ 1.32
SCARF1-202ENST00000348987 NASPP49321 788 aaPredicted RBP23.28■■□□□ 1.32
SCARF1-202ENST00000348987 SMC5Q8IY18 1101 aa23.28■■□□□ 1.32
SCARF1-202ENST00000348987 RIPK4P57078 832 aa23.28■■□□□ 1.32
SCARF1-202ENST00000348987 ARHGAP31Q2M1Z3 1444 aa23.27■■□□□ 1.32
SCARF1-202ENST00000348987 CALD1Q05682 793 aaKnown RBP23.27■■□□□ 1.32
SCARF1-202ENST00000348987 PPP1R9BQ96SB3 815 aa23.27■■□□□ 1.32
SCARF1-202ENST00000348987 FTSJ3Q8IY81 847 aaKnown RBP23.26■■□□□ 1.31
SCARF1-202ENST00000348987 SNX21Q969T3 373 aa23.26■■□□□ 1.31
SCARF1-202ENST00000348987 PTPRMP28827 1452 aa23.26■■□□□ 1.31
SCARF1-202ENST00000348987 MSNP26038 577 aaKnown RBP23.26■■□□□ 1.31
SCARF1-202ENST00000348987 SMC4Q9NTJ3 1288 aa23.26■■□□□ 1.31
SCARF1-202ENST00000348987 ZKSCAN2Q63HK3 967 aa23.25■■□□□ 1.31
SCARF1-202ENST00000348987 SSH1Q8WYL5 1049 aa23.25■■□□□ 1.31
SCARF1-202ENST00000348987 CIZ1Q9ULV3 898 aaPredicted RBP23.25■■□□□ 1.31
SCARF1-202ENST00000348987 CD163L1Q9NR16 1453 aa23.25■■□□□ 1.31
SCARF1-202ENST00000348987 RBM25P49756 843 aaKnown RBP23.25■■□□□ 1.31
SCARF1-202ENST00000348987 DZIP1LQ8IYY4 767 aaKnown RBP23.25■■□□□ 1.31
SCARF1-202ENST00000348987 ADGRB2O60241 1585 aa23.24■■□□□ 1.31
SCARF1-202ENST00000348987 TRIM27P14373 513 aa23.24■■□□□ 1.31
SCARF1-202ENST00000348987 PRDM4Q9UKN5 801 aa23.24■■□□□ 1.31
SCARF1-202ENST00000348987 FAM13BQ9NYF5 915 aa23.24■■□□□ 1.31
SCARF1-202ENST00000348987 CABP1Q9NZU7 370 aa23.24■■□□□ 1.31
SCARF1-202ENST00000348987 ZFYVE9O95405 1425 aa23.23■■□□□ 1.31
SCARF1-202ENST00000348987 TERF2IPQ9NYB0 399 aa23.23■■□□□ 1.31
SCARF1-202ENST00000348987 COL3A1P02461 1466 aaPredicted RBP23.23■■□□□ 1.31
SCARF1-202ENST00000348987 PREX1Q8TCU6 1659 aa23.23■■□□□ 1.31
SCARF1-202ENST00000348987 ANP32BQ92688 251 aaKnown RBP23.23■■□□□ 1.31
SCARF1-202ENST00000348987 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.22■■□□□ 1.31
SCARF1-202ENST00000348987 WAPLQ7Z5K2 1190 aa23.22■■□□□ 1.31
SCARF1-202ENST00000348987 YTHDC2Q9H6S0 1430 aaKnown RBP23.22■■□□□ 1.31
SCARF1-202ENST00000348987 CDK19Q9BWU1 502 aa23.22■■□□□ 1.31
SCARF1-202ENST00000348987 PODXL2Q9NZ53 605 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms