RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PLEKHG3A1L390 1219 aa16.93■□□□□ 0.3
CLK3-201ENST00000345005 MAP2P11137 1827 aaKnown RBP16.92■□□□□ 0.3
CLK3-201ENST00000345005 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLK3-201ENST00000345005 NCKAP5LQ9HCH0 1330 aa16.91■□□□□ 0.3
CLK3-201ENST00000345005 SENP3-EIF4A1A0A087X0R7 540 aa16.91■□□□□ 0.3
CLK3-201ENST00000345005 SALL2Q9Y467 1007 aaPredicted RBP16.9■□□□□ 0.3
CLK3-201ENST00000345005 FMN2Q9NZ56 1722 aa16.9■□□□□ 0.3
CLK3-201ENST00000345005 NGEFQ8N5V2 710 aa16.89■□□□□ 0.29
CLK3-201ENST00000345005 STRCQ7RTU9 1775 aa16.88■□□□□ 0.29
CLK3-201ENST00000345005 ACEP12821 1306 aa16.88■□□□□ 0.29
CLK3-201ENST00000345005 ANKARQ7Z5J8 1434 aa16.88■□□□□ 0.29
CLK3-201ENST00000345005 NRKQ7Z2Y5 1582 aa16.87■□□□□ 0.29
CLK3-201ENST00000345005 NALCNQ8IZF0 1738 aa16.87■□□□□ 0.29
CLK3-201ENST00000345005 NUTM2FA1L443 756 aa16.86■□□□□ 0.29
CLK3-201ENST00000345005 MSH5O43196 834 aa16.86■□□□□ 0.29
CLK3-201ENST00000345005 ILDR1Q86SU0 546 aaPredicted RBP16.86■□□□□ 0.29
CLK3-201ENST00000345005 NME9Q86XW9 330 aa16.85■□□□□ 0.29
CLK3-201ENST00000345005 CCDC146Q8IYE0 955 aa16.85■□□□□ 0.29
CLK3-201ENST00000345005 COG3Q96JB2 828 aa16.85■□□□□ 0.29
CLK3-201ENST00000345005 NKTRP30414 1462 aaKnown RBP16.85■□□□□ 0.29
CLK3-201ENST00000345005 TTC21BQ7Z4L5 1316 aa16.84■□□□□ 0.29
CLK3-201ENST00000345005 USP6P35125 1406 aa16.84■□□□□ 0.29
CLK3-201ENST00000345005 APAF1O14727 1248 aa16.84■□□□□ 0.29
CLK3-201ENST00000345005 RUNDC1Q96C34 613 aa16.84■□□□□ 0.29
CLK3-201ENST00000345005 NWD1Q149M9 1564 aa16.84■□□□□ 0.29
CLK3-201ENST00000345005 COL3A1P02461 1466 aaPredicted RBP16.83■□□□□ 0.28
CLK3-201ENST00000345005 PNPLA6Q8IY17 1366 aa16.83■□□□□ 0.28
CLK3-201ENST00000345005 AATKQ6ZMQ8 1374 aa16.82■□□□□ 0.28
CLK3-201ENST00000345005 PRKCSHP14314 528 aaPredicted RBP16.82■□□□□ 0.28
CLK3-201ENST00000345005 NGDNQ8NEJ9 315 aaKnown RBP16.82■□□□□ 0.28
CLK3-201ENST00000345005 ZNF521Q96K83 1311 aa16.81■□□□□ 0.28
CLK3-201ENST00000345005 U2AF1L5P0DN76 240 aaPredicted RBP16.81■□□□□ 0.28
CLK3-201ENST00000345005 U2AF1Q01081 240 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLK3-201ENST00000345005 CDCA7LQ96GN5 454 aa16.81■□□□□ 0.28
CLK3-201ENST00000345005 POLKQ9UBT6 870 aa16.81■□□□□ 0.28
CLK3-201ENST00000345005 ADGRL3Q9HAR2 1447 aa16.81■□□□□ 0.28
CLK3-201ENST00000345005 TTC21AQ8NDW8 1320 aa16.81■□□□□ 0.28
CLK3-201ENST00000345005 SSH2Q76I76 1423 aa16.8■□□□□ 0.28
CLK3-201ENST00000345005 DIAPH1O60610 1272 aaKnown RBP16.8■□□□□ 0.28
CLK3-201ENST00000345005 PMFBP1Q8TBY8 1022 aa16.8■□□□□ 0.28
CLK3-201ENST00000345005 GOLGA2Q08379 1002 aa16.8■□□□□ 0.28
CLK3-201ENST00000345005 ZRANB1Q9UGI0 708 aa16.79■□□□□ 0.28
CLK3-201ENST00000345005 RNF123Q5XPI4 1314 aa16.79■□□□□ 0.28
CLK3-201ENST00000345005 IRX6P78412 446 aaPredicted RBP16.78■□□□□ 0.28
CLK3-201ENST00000345005 NCBP3Q53F19 620 aaKnown RBP16.78■□□□□ 0.28
CLK3-201ENST00000345005 PNNQ9H307 717 aaKnown RBP16.78■□□□□ 0.28
CLK3-201ENST00000345005 U2SURPO15042 1029 aaKnown RBP16.77■□□□□ 0.28
CLK3-201ENST00000345005 CDK12Q9NYV4 1490 aaPredicted RBP16.77■□□□□ 0.28
CLK3-201ENST00000345005 OVOS2A0A0J9YW53 1432 aa16.76■□□□□ 0.27
CLK3-201ENST00000345005 OVOS2Q6IE36 1432 aa16.76■□□□□ 0.27
CLK3-201ENST00000345005 PPM1GO15355 546 aaPredicted RBP16.76■□□□□ 0.27
CLK3-201ENST00000345005 TCP11L2Q8N4U5 519 aa16.76■□□□□ 0.27
CLK3-201ENST00000345005 RCAN3Q9UKA8 241 aa16.76■□□□□ 0.27
CLK3-201ENST00000345005 IQSEC2Q5JU85 1478 aa16.76■□□□□ 0.27
CLK3-201ENST00000345005 FBLN1P23142 703 aa16.75■□□□□ 0.27
CLK3-201ENST00000345005 C14orf37Q86TY3 774 aa16.75■□□□□ 0.27
CLK3-201ENST00000345005 PROSER2Q86WR7 435 aaPredicted RBP16.75■□□□□ 0.27
CLK3-201ENST00000345005 SLFN5Q08AF3 891 aa16.75■□□□□ 0.27
CLK3-201ENST00000345005 DMRT2Q9Y5R5 561 aa16.75■□□□□ 0.27
CLK3-201ENST00000345005 PHF8Q9UPP1 1060 aa16.74■□□□□ 0.27
CLK3-201ENST00000345005 EMILIN1Q9Y6C2 1016 aa16.74■□□□□ 0.27
CLK3-201ENST00000345005 USP31Q70CQ4 1352 aa16.73■□□□□ 0.27
CLK3-201ENST00000345005 CCDC27Q2M243 656 aa16.73■□□□□ 0.27
CLK3-201ENST00000345005 WWC1Q8IX03 1113 aa16.73■□□□□ 0.27
CLK3-201ENST00000345005 RBM33Q96EV2 1170 aaKnown RBP16.73■□□□□ 0.27
CLK3-201ENST00000345005 PIK3C2AO00443 1686 aa16.73■□□□□ 0.27
CLK3-201ENST00000345005 E9PSI1 815 aa16.73■□□□□ 0.27
CLK3-201ENST00000345005 FCHSD2O94868 740 aa16.73■□□□□ 0.27
CLK3-201ENST00000345005 DUSP27Q5VZP5 1158 aa16.73■□□□□ 0.27
CLK3-201ENST00000345005 TRMT2AQ8IZ69 625 aaKnown RBP16.73■□□□□ 0.27
CLK3-201ENST00000345005 USP54Q70EL1 1684 aa16.72■□□□□ 0.27
CLK3-201ENST00000345005 PLEKHF1Q96S99 279 aa16.72■□□□□ 0.27
CLK3-201ENST00000345005 RRS1Q15050 365 aaKnown RBP16.71■□□□□ 0.27
CLK3-201ENST00000345005 STRCP1A6NGW2 1772 aa16.71■□□□□ 0.27
CLK3-201ENST00000345005 MAPK8IP3Q9UPT6 1336 aa16.71■□□□□ 0.26
CLK3-201ENST00000345005 NEUROD2Q15784 382 aa16.7■□□□□ 0.26
CLK3-201ENST00000345005 WDR63Q8IWG1 891 aa16.7■□□□□ 0.26
CLK3-201ENST00000345005 FBXO41Q8TF61 875 aa16.7■□□□□ 0.26
CLK3-201ENST00000345005 PHF23Q9BUL5 403 aaPredicted RBP16.7■□□□□ 0.26
CLK3-201ENST00000345005 IL13P35225 146 aa16.7■□□□□ 0.26
CLK3-201ENST00000345005 B4GALNT3Q6L9W6 998 aa16.7■□□□□ 0.26
CLK3-201ENST00000345005 CERKQ8TCT0 537 aa16.7■□□□□ 0.26
CLK3-201ENST00000345005 NOP58Q9Y2X3 529 aaKnown RBP16.7■□□□□ 0.26
CLK3-201ENST00000345005 ESCO1Q5FWF5 840 aa16.69■□□□□ 0.26
CLK3-201ENST00000345005 C19orf44Q9H6X5 657 aa16.69■□□□□ 0.26
CLK3-201ENST00000345005 RRP7AQ9Y3A4 280 aaKnown RBP16.69■□□□□ 0.26
CLK3-201ENST00000345005 NCOA3Q9Y6Q9 1424 aa16.69■□□□□ 0.26
CLK3-201ENST00000345005 NEFMP07197 916 aa16.68■□□□□ 0.26
CLK3-201ENST00000345005 MARF1Q9Y4F3 1742 aaKnown RBP16.68■□□□□ 0.26
CLK3-201ENST00000345005 RRP1P56182 461 aaKnown RBP16.68■□□□□ 0.26
CLK3-201ENST00000345005 LRRC7Q96NW7 1537 aa16.68■□□□□ 0.26
CLK3-201ENST00000345005 LTBP4Q8N2S1 1624 aa16.67■□□□□ 0.26
CLK3-201ENST00000345005 ANP32AP39687 249 aaKnown RBP16.67■□□□□ 0.26
CLK3-201ENST00000345005 TMPOP42166 694 aaKnown RBP16.67■□□□□ 0.26
CLK3-201ENST00000345005 NLRP6P59044 892 aa16.67■□□□□ 0.26
CLK3-201ENST00000345005 PEAK1Q9H792 1746 aa16.66■□□□□ 0.26
CLK3-201ENST00000345005 PSME1Q06323 249 aa16.66■□□□□ 0.26
CLK3-201ENST00000345005 CCDC136Q96JN2 1154 aa16.66■□□□□ 0.26
CLK3-201ENST00000345005 RSPH6AQ9H0K4 717 aa16.66■□□□□ 0.26
CLK3-201ENST00000345005 KIF1AQ12756 1690 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms