RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 MAMSTRQ6ZN01 415 aa10.25□□□□□ -0.77
ATG4A-201ENST00000343524 PPP1R9BQ96SB3 815 aa10.25□□□□□ -0.77
ATG4A-201ENST00000343524 PLEKHD1A6NEE1 506 aa10.25□□□□□ -0.77
ATG4A-201ENST00000343524 CDCA7LQ96GN5 454 aa10.25□□□□□ -0.77
ATG4A-201ENST00000343524 GBP4Q96PP9 640 aa10.25□□□□□ -0.77
ATG4A-201ENST00000343524 CEP170BQ9Y4F5 1589 aaPredicted RBP10.25□□□□□ -0.77
ATG4A-201ENST00000343524 MYO3AQ8NEV4 1616 aa10.24□□□□□ -0.77
ATG4A-201ENST00000343524 PLXNC1O60486 1568 aa10.24□□□□□ -0.77
ATG4A-201ENST00000343524 DMTNQ08495 405 aa10.24□□□□□ -0.77
ATG4A-201ENST00000343524 CNGB1Q14028 1251 aaPredicted RBP10.24□□□□□ -0.77
ATG4A-201ENST00000343524 ZNF326Q5BKZ1 582 aaKnown RBP10.24□□□□□ -0.77
ATG4A-201ENST00000343524 TAF3Q5VWG9 929 aa10.24□□□□□ -0.77
ATG4A-201ENST00000343524 TBC1D2Q9BYX2 928 aa10.24□□□□□ -0.77
ATG4A-201ENST00000343524 GZF1Q9H116 711 aaPredicted RBP10.24□□□□□ -0.77
ATG4A-201ENST00000343524 PCDHB13Q9Y5F0 798 aa10.24□□□□□ -0.77
ATG4A-201ENST00000343524 ADGBQ8N7X0 1667 aa10.24□□□□□ -0.77
ATG4A-201ENST00000343524 PLCH2O75038 1416 aa10.23□□□□□ -0.77
ATG4A-201ENST00000343524 KIAA1107Q9UPP5 1409 aa10.23□□□□□ -0.77
ATG4A-201ENST00000343524 KIF20AO95235 890 aa10.23□□□□□ -0.77
ATG4A-201ENST00000343524 CIZ1Q9ULV3 898 aaPredicted RBP10.23□□□□□ -0.77
ATG4A-201ENST00000343524 NUP153P49790 1475 aaKnown RBP10.23□□□□□ -0.77
ATG4A-201ENST00000343524 VWDEQ8N2E2 1590 aa10.23□□□□□ -0.77
ATG4A-201ENST00000343524 PDIA4P13667 645 aaKnown RBP10.23□□□□□ -0.77
ATG4A-201ENST00000343524 CANXP27824 592 aaKnown RBP10.23□□□□□ -0.77
ATG4A-201ENST00000343524 P3H3Q8IVL6 736 aa10.23□□□□□ -0.77
ATG4A-201ENST00000343524 CAMSAP2Q08AD1 1489 aa10.23□□□□□ -0.77
ATG4A-201ENST00000343524 ZNF518AQ6AHZ1 1483 aa10.23□□□□□ -0.77
ATG4A-201ENST00000343524 DAPK1P53355 1430 aa10.22□□□□□ -0.77
ATG4A-201ENST00000343524 MCM5P33992 734 aa10.22□□□□□ -0.77
ATG4A-201ENST00000343524 C20orf194Q5TEA3 1177 aa10.22□□□□□ -0.77
ATG4A-201ENST00000343524 GTPBP4Q9BZE4 634 aaKnown RBP10.22□□□□□ -0.77
ATG4A-201ENST00000343524 RIPK4P57078 832 aa10.21□□□□□ -0.77
ATG4A-201ENST00000343524 FAM212AQ96EL1 285 aa10.21□□□□□ -0.77
ATG4A-201ENST00000343524 FAM13BQ9NYF5 915 aa10.21□□□□□ -0.77
ATG4A-201ENST00000343524 COLQQ9Y215 455 aaPredicted RBP10.21□□□□□ -0.77
ATG4A-201ENST00000343524 LAMC1P11047 1609 aa10.21□□□□□ -0.77
ATG4A-201ENST00000343524 NCOA3Q9Y6Q9 1424 aa10.21□□□□□ -0.77
ATG4A-201ENST00000343524 PZPP20742 1482 aa10.21□□□□□ -0.78
ATG4A-201ENST00000343524 NKTRP30414 1462 aaKnown RBP10.21□□□□□ -0.78
ATG4A-201ENST00000343524 POTEMA6NI47 508 aa10.21□□□□□ -0.78
ATG4A-201ENST00000343524 ZNF500O60304 480 aaPredicted RBP10.21□□□□□ -0.78
ATG4A-201ENST00000343524 IFNL1Q8IU54 200 aa10.21□□□□□ -0.78
ATG4A-201ENST00000343524 HSCBQ8IWL3 235 aa10.21□□□□□ -0.78
ATG4A-201ENST00000343524 CCDC94Q9BW85 323 aaPredicted RBP10.21□□□□□ -0.78
ATG4A-201ENST00000343524 RNF17Q9BXT8 1623 aaKnown RBP10.21□□□□□ -0.78
ATG4A-201ENST00000343524 NEURL4Q96JN8 1562 aa10.2□□□□□ -0.78
ATG4A-201ENST00000343524 LETM1O95202 739 aaPredicted RBP10.2□□□□□ -0.78
ATG4A-201ENST00000343524 PMFBP1Q8TBY8 1022 aa10.2□□□□□ -0.78
ATG4A-201ENST00000343524 CARD11Q9BXL7 1154 aa10.2□□□□□ -0.78
ATG4A-201ENST00000343524 ABCA6Q8N139 1617 aa10.2□□□□□ -0.78
ATG4A-201ENST00000343524 SENP3-EIF4A1A0A087X0R7 540 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 GOLGA6L22H0YM25 854 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 NASPP49321 788 aaPredicted RBP10.19□□□□□ -0.78
ATG4A-201ENST00000343524 GOLGA2Q08379 1002 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 PDE3AQ14432 1141 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 DUSP27Q5VZP5 1158 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 CHIC2Q9UKJ5 165 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 TRIM35Q9UPQ4 493 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 UQCRHLA0A096LP55 91 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 UQCRHP07919 91 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 TAF7LQ5H9L4 462 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 EFCAB2Q5VUJ9 269 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 NGEFQ8N5V2 710 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 SCUBE2Q9NQ36 999 aa10.19□□□□□ -0.78
ATG4A-201ENST00000343524 POTEGQ6S5H5 508 aa10.18□□□□□ -0.78
ATG4A-201ENST00000343524 SASS6Q6UVJ0 657 aa10.18□□□□□ -0.78
ATG4A-201ENST00000343524 AFAP1Q8N556 730 aa10.18□□□□□ -0.78
ATG4A-201ENST00000343524 TAOK2Q9UL54 1235 aa10.18□□□□□ -0.78
ATG4A-201ENST00000343524 MLH3Q9UHC1 1453 aa10.18□□□□□ -0.78
ATG4A-201ENST00000343524 A2ML1A8K2U0 1454 aa10.17□□□□□ -0.78
ATG4A-201ENST00000343524 BBXQ8WY36 941 aaPredicted RBP10.17□□□□□ -0.78
ATG4A-201ENST00000343524 LRRC7Q96NW7 1537 aa10.17□□□□□ -0.78
ATG4A-201ENST00000343524 IER5LQ5T953 404 aa10.17□□□□□ -0.78
ATG4A-201ENST00000343524 LCE2DQ5TA82 110 aaPredicted RBP10.17□□□□□ -0.78
ATG4A-201ENST00000343524 CLUAP1Q96AJ1 413 aa10.17□□□□□ -0.78
ATG4A-201ENST00000343524 NOL7Q9UMY1 257 aaKnown RBP10.17□□□□□ -0.78
ATG4A-201ENST00000343524 R3HCC1Q9Y3T6 440 aaKnown RBP10.17□□□□□ -0.78
ATG4A-201ENST00000343524 ZNF521Q96K83 1311 aa10.17□□□□□ -0.78
ATG4A-201ENST00000343524 PLSCR2Q9NRY7 297 aa10.16□□□□□ -0.78
ATG4A-201ENST00000343524 ITSN2Q9NZM3 1697 aa10.16□□□□□ -0.78
ATG4A-201ENST00000343524 IPO4Q8TEX9 1081 aaKnown RBP10.15□□□□□ -0.78
ATG4A-201ENST00000343524 FBXO3Q9UK99 471 aa10.15□□□□□ -0.78
ATG4A-201ENST00000343524 SEC24BO95487 1268 aa10.15□□□□□ -0.79
ATG4A-201ENST00000343524 WDR43Q15061 677 aaKnown RBP eCLIP10.15□□□□□ -0.79
ATG4A-201ENST00000343524 FAM135BQ49AJ0 1406 aa10.15□□□□□ -0.79
ATG4A-201ENST00000343524 SYNMO15061 1565 aa10.14□□□□□ -0.79
ATG4A-201ENST00000343524 RTEL1-TNFRSF6BF6WH68 1400 aa10.14□□□□□ -0.79
ATG4A-201ENST00000343524 ARHGAP31Q2M1Z3 1444 aa10.14□□□□□ -0.79
ATG4A-201ENST00000343524 ADGRL2O95490 1459 aa10.14□□□□□ -0.79
ATG4A-201ENST00000343524 TRPM1Q7Z4N2 1603 aa10.14□□□□□ -0.79
ATG4A-201ENST00000343524 CROCC2H7BZ55 1655 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 ABCC5O15440 1437 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 SLFN5Q08AF3 891 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 PPP4R3BQ5MIZ7 849 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 SNX21Q969T3 373 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 EIF2AK4Q9P2K8 1649 aaKnown RBP10.13□□□□□ -0.79
ATG4A-201ENST00000343524 ZHX1Q9UKY1 873 aaPredicted RBP10.13□□□□□ -0.79
ATG4A-201ENST00000343524 KDM5DQ9BY66 1539 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 PLEKHH1Q9ULM0 1364 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 RBM25P49756 843 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms